Clone Sequence Records
BO09275.3prime Sequence
861 bp (771 high quality bases) assembled on 2006-01-18
> BO09275.3prime
ATGGTCTAGAAAGCTTGCAGCCAATGGTGCATCAGCATCAAGATGGTAGC
TCTTTACGGTTGAGAACCTCAGCGCCGGATATTTGGCCTCGGTCAAATCG
AACTCGGAGCTGATGTCCACCTTGTTGCGCTTCTGCACGAGCGTGTAATG
TGACCAAACCAACTGGGCGCATCGGCGCTTGGTGGTGCCTGCGATGCGCA
GCTCGATCAGGAACTGTGAGGAGTCCTCATCCACTGGCATGATACTCCCT
CGCCTCTGCCGCACGTTAGCCGGCCCTCGCTGCTGCGACTTTTGCAGCAC
CAGAGTGACTGTGCTCCCGAAGAGACGATAGCGACCCCGAAGCATTTCCG
CCCGTACGTTGTTCACGTGCTTCAGTTTGGATACACCTTGCGCCGGCTCA
TCGGCAGTCGTCATCATCAGCACCTTGCCATCGGGCAGAAAGCGAATGTA
GCGATAGTACTCCACCAGTTGCACAGGACGGTAGAACTGATCCTGGAAGC
TGTTCTCGCCCATTCTCAGGTACGTAGTCTTGCTGATGTAGCAGCCGTTG
AAAAGAACTCGGTCTCGGCGGATGAACATGTCTCGCCAGGAGTGGAACAC
GTTGCTTACATCCGAATCCTGGGCCTCTAGAGTTCCAACGTTGTGGCCCC
ATACTTTGACACAAGCTAGCCTCCAGAGCTCCTCATCCCGCGCGTAGACA
TAGAAACCTTTGCAAACAGCAGCGCACTGCTCTAGCGAGCGCATGTCCAG
TTGGGCGGAAACCACCCAGCGCAGGATGCGCATCACAATCTCGGGCGGCA
GGTCGGCAAAGTGCAGACCGGTGGTCAGGACATTGGCATCACGGCTGGAT
GCTATCATCTT
BO09275.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5961-PA | 1329 | CG5961-RA | 484..1326 | 861..19 | 4215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:11:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5961-RB | 1463 | CG5961-RB | 540..1382 | 861..19 | 4215 | 100 | Minus |
| CG5961-RC | 1653 | CG5961-RC | 730..1572 | 861..19 | 4215 | 100 | Minus |
| CG5961-RA | 1658 | CG5961-RA | 735..1577 | 861..19 | 4215 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:11:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12458502..12459138 | 19..655 | 3185 | 100 | Plus |
| 3R | 32079331 | 3R | 12459200..12459405 | 656..861 | 1030 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:11:09 has no hits.
BO09275.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:26 Download gff for
BO09275.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5961-PA | 484..1329 | 18..861 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:42 Download gff for
BO09275.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5961-PA | 484..1329 | 18..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:27:56 Download gff for
BO09275.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5961-RA | 735..1583 | 11..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:38:27 Download gff for
BO09275.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5961-RA | 735..1583 | 11..861 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:38:27 Download gff for
BO09275.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12458496..12459138 | 11..655 | 99 | <- | Plus |
| 3R | 12459200..12459405 | 656..861 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:27:56 Download gff for
BO09275.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8284218..8284860 | 11..655 | 99 | <- | Plus |
| arm_3R | 8284922..8285127 | 656..861 | 100 | | Plus |
BO09275.5prime Sequence
844 bp (735 high quality bases) assembled on 2006-01-17
> BO09275.5prime
GAAGTTATCAGTCGACATGTCGGATGTGGACTCGGATGGCGAGGAGCCAA
CCCGGAAAACGGGCACCAATGCACTGGATGAGTTCCGGGAGAACTGGCAG
CGGGAGCTGCAGGAACACACAACAAACACTGGATCCAGGAGCCATTCCGA
GGCTGGAGATCGCCTCACGGCGGCCAATTCCAATCTCAGCGAGGCTGATC
TACTGCAGGCCAAGGCGGAGAGTCTCTATCGGACCGCTGTGCAGCTGGAG
CAGCGTGGCAAGGTCTACGACGCACTACCCTTCTACAGGAAGGCCACCCA
AATCGTTCCGGATATTGAGTTCAGGTTCTACGAGCAGCAGAAGCAAAAGC
TCAGCAACGATGTCAGCAAGAAGTACCTCAATCTGGCTAACGATTTGGCC
AAGCAATTGGATCTAGGTCAGTCGGATGGGGAGGAGGTCGTGGACAACCT
GTACGAAAAGTTCCAGCATGATTTGCGTCAGAAAAACATTTACAATGGCA
AGATGATAGCATCCAGCCGTGATGCCAATGTCCTGACCACCGGTCTGCAC
TTTGCCGACCTGCCGCCCGAGATTGTGATGCGCATCCTGCGCTGGGTGGT
TTCCGCCCAACTGGACATGCGCTCGCTAGAGCAGTGCGCTGCTGTTTGCA
AAGGTTTCTATGTCTACGCGCGGGATGAGGAGCTCTGGAGGCTAGCTTGT
GTCAAAGTATGGGGCCACAACGTTGGAACTCTAGAGGCCCAGGATTCGGA
TGTAAGCAACGTGTTCCACTCCTGGCGAGACATGTTCATCCGCCGAGACC
GAGTTCTTTTCAACGGCTGCTACATCAGCAAGACTACGTACCTG
BO09275.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5961-PA | 1329 | CG5961-RA | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:21:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5961-RB | 1463 | CG5961-RB | 56..884 | 16..844 | 4145 | 100 | Plus |
| CG5961-RC | 1653 | CG5961-RC | 246..1074 | 16..844 | 4145 | 100 | Plus |
| CG5961-RA | 1658 | CG5961-RA | 251..1079 | 16..844 | 4145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:21:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12459200..12459889 | 705..16 | 3450 | 100 | Minus |
| 3R | 32079331 | 3R | 12459000..12459138 | 844..706 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:21:08 has no hits.
BO09275.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:27 Download gff for
BO09275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5961-PA | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:43 Download gff for
BO09275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5961-PA | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:22:27 Download gff for
BO09275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5961-RA | 251..1079 | 16..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:49:36 Download gff for
BO09275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5961-RA | 251..1079 | 16..844 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:49:36 Download gff for
BO09275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12459000..12459138 | 706..844 | 100 | <- | Minus |
| 3R | 12459200..12459889 | 16..705 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:22:27 Download gff for
BO09275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8284722..8284860 | 706..844 | 100 | <- | Minus |
| arm_3R | 8284922..8285611 | 16..705 | 100 | | Minus |
BO09275.complete Sequence
1360 bp (1360 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631459
> BO09275.complete
GAAGTTATCAGTCGACATGTCGGATGTGGACTCGGATGGCGAGGAGCCAA
CCCGGAAAACGGGCACCAATGCACTGGATGAGTTCCGGGAGAACTGGCAG
CGGGAGCTGCAGGAACACACAACAAACACTGGATCCAGGAGCCATTCCGA
GGCTGGAGATCGCCTCACGGCGGCCAATTCCAATCTCAGCGAGGCTGATC
TACTGCAGGCCAAGGCGGAGAGTCTCTATCGGACCGCTGTGCAGCTGGAG
CAGCGTGGCAAGGTCTACGACGCACTACCCTTCTACAGGAAGGCCACCCA
AATCGTTCCGGATATTGAGTTCAGGTTCTACGAGCAGCAGAAGCAAAAGC
TCAGCAACGATGTCAGCAAGAAGTACCTCAATCTGGCTAACGATTTGGCC
AAGCAATTGGATCTAGGTCAGTCGGATGGGGAGGAGGTCGTGGACAACCT
GTACGAAAAGTTCCAGCATGATTTGCGTCAGAAAAACATTTACAATGGCA
AGATGATAGCATCCAGCCGTGATGCCAATGTCCTGACCACCGGTCTGCAC
TTTGCCGACCTGCCGCCCGAGATTGTGATGCGCATCCTGCGCTGGGTGGT
TTCCGCCCAACTGGACATGCGCTCGCTAGAGCAGTGCGCTGCTGTTTGCA
AAGGTTTCTATGTCTACGCGCGGGATGAGGAGCTCTGGAGGCTAGCTTGT
GTCAAAGTATGGGGCCACAACGTTGGAACTCTAGAGGCCCAGGATTCGGA
TGTAAGCAACGTGTTCCACTCCTGGCGAGACATGTTCATCCGCCGAGACC
GAGTTCTTTTCAACGGCTGCTACATCAGCAAGACTACGTACCTGAGAATG
GGCGAGAACAGCTTCCAGGATCAGTTCTACCGTCCTGTGCAACTGGTGGA
GTACTATCGCTACATTCGCTTTCTGCCCGATGGCAAGGTGCTGATGATGA
CGACTGCCGATGAGCCGGCGCAAGGTGTATCCAAACTGAAGCACGTGAAC
AACGTACGGGCGGAAATGCTTCGGGGTCGCTATCGTCTCTTCGGGAGCAC
AGTCACTCTGGTGCTGCAAAAGTCGCAGCAGCGAGGGCCGGCTAACGTGC
GGCAGAGGCGAGGGAGTATCATGCCAGTGGATGAGGACTCCTCACAGTTC
CTGATCGAGCTGCGCATCGCAGGCACCACCAAGCGCCGATGCGCCCAGTT
GGTTTGGTCACATTACACGCTCGTGCAGAAGCGCAACAAGGTGGACATCA
GCTCCGAGTTCGATTTGACCGAGGCCAAATATCCGGCGCTGAGGTTCTCA
ACCGTAAAGAGCTACCATCTTGATGCTGATGCACCATTGGCTGCAAGCTT
TCTAGACCAT
BO09275.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:59:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5961-RB | 1329 | CG5961-PB | 1..1326 | 17..1342 | 6630 | 100 | Plus |
| CG5961-RC | 1329 | CG5961-PC | 1..1326 | 17..1342 | 6630 | 100 | Plus |
| CG5961-RA | 1329 | CG5961-PA | 1..1326 | 17..1342 | 6630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:59:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5961-RB | 1463 | CG5961-RB | 56..1382 | 16..1342 | 6635 | 100 | Plus |
| CG5961-RC | 1653 | CG5961-RC | 246..1572 | 16..1342 | 6635 | 100 | Plus |
| CG5961-RA | 1658 | CG5961-RA | 251..1577 | 16..1342 | 6635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:59:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12459200..12459889 | 705..16 | 3450 | 100 | Minus |
| 3R | 32079331 | 3R | 12458502..12459138 | 1342..706 | 3185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:59:34 has no hits.
BO09275.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:10 Download gff for
BO09275.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5961-RA | 1..1329 | 17..1343 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:02 Download gff for
BO09275.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5961-RA | 248..1580 | 16..1350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:57 Download gff for
BO09275.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5961-RA | 252..1577 | 17..1344 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:10 Download gff for
BO09275.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5961-RA | 248..1580 | 16..1350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:01 Download gff for
BO09275.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5961-RA | 252..1577 | 17..1344 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:01 Download gff for
BO09275.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12458500..12459138 | 706..1344 | 99 | <- | Minus |
| 3R | 12459200..12459888 | 17..705 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:57 Download gff for
BO09275.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8284222..8284860 | 706..1344 | 99 | <- | Minus |
| arm_3R | 8284922..8285610 | 17..705 | 100 | | Minus |
BO09275.pep Sequence
Translation from 16 to 1360
> BO09275.pep
MSDVDSDGEEPTRKTGTNALDEFRENWQRELQEHTTNTGSRSHSEAGDRL
TAANSNLSEADLLQAKAESLYRTAVQLEQRGKVYDALPFYRKATQIVPDI
EFRFYEQQKQKLSNDVSKKYLNLANDLAKQLDLGQSDGEEVVDNLYEKFQ
HDLRQKNIYNGKMIASSRDANVLTTGLHFADLPPEIVMRILRWVVSAQLD
MRSLEQCAAVCKGFYVYARDEELWRLACVKVWGHNVGTLEAQDSDVSNVF
HSWRDMFIRRDRVLFNGCYISKTTYLRMGENSFQDQFYRPVQLVEYYRYI
RFLPDGKVLMMTTADEPAQGVSKLKHVNNVRAEMLRGRYRLFGSTVTLVL
QKSQQRGPANVRQRRGSIMPVDEDSSQFLIELRIAGTTKRRCAQLVWSHY
TLVQKRNKVDISSEFDLTEAKYPALRFSTVKSYHLDADAPLAASFLDH
BO09275.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5961-PB | 442 | CG5961-PB | 1..442 | 1..442 | 2291 | 100 | Plus |
| CG5961-PC | 442 | CG5961-PC | 1..442 | 1..442 | 2291 | 100 | Plus |
| CG5961-PA | 442 | CG5961-PA | 1..442 | 1..442 | 2291 | 100 | Plus |
