Clone Sequence Records
BO09278.3prime Sequence
665 bp (664 high quality bases) assembled on 2006-01-18
> BO09278.3prime
ATGGTCTAGAAAGCTTGCCAGAACCCAGAAATACATGATGAACACTAGAA
GTATCATGCCCAAGGCCATCGCCTTCACGTACATGGACTTTCGGTTGAGC
AGCTTGGCGTCCTTCTTGTACTTCTGTGACATCATCGATAGGTTCTGGGT
CTTGGTGTCGAGTTCCGCCAGCACTGTGCCACGTTGGAGCACGTCGTCAA
TGTTTTGCACCATGATGCGCTGCACATCCTGCAGCTGTGTGTTGATGTTG
CTGATGTTGCGTCTGCGGTCCGTCAACTGTTTTTTCGCCTTCTGTATGTA
CACGTCAAACTCGATGAATGCGTATGGGCGAGTCACTGAGTTTACTCGCC
GGCCGTAGTTAGCATGGAACTCCTGGGCCAGGTCCTCCAGGTAATTGAAG
GCCAGTCGCTTTGAGTACATCTTGTCCACCATCACCAGGTAGCAGACGTC
GTTCTCGATTAGGTAGTGGAATAGGTAGGGTCCGGTCTCGATACTGCATC
GAGCCGGGGAGTGGGTACCCAGCTTGCGGAAGAGCATCTTAGCCTGGTTT
TGGTAGTCCAGTATGCTGCGTCCGCTCTGCTCGTCATCCTGCATGGTCCC
CACCAGAGGAAGGCCATCGATGACCCTGGCTATCATGGTCAGCAGCGCCA
TATCGACTGATAACT
BO09278.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7359-PA | 636 | CG7359-RA | 1..633 | 651..19 | 3165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:11:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec22-RA | 1743 | CG7359-RA | 410..1042 | 651..19 | 3165 | 100 | Minus |
Sec22-RB | 1749 | CG7359-RB | 410..1048 | 651..19 | 3095 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:11:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 806969..807270 | 466..165 | 1510 | 100 | Minus |
X | 23542271 | X | 807353..807499 | 165..19 | 735 | 100 | Minus |
X | 23542271 | X | 806630..806742 | 579..467 | 565 | 100 | Minus |
X | 23542271 | X | 806485..806559 | 651..577 | 375 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 18:11:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2618..2665 | 286..240 | 111 | 72.9 | Minus |
BO09278.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:31 Download gff for
BO09278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7359-PA | 1..636 | 15..651 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:49 Download gff for
BO09278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7359-PA | 1..636 | 15..651 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:34:30 Download gff for
BO09278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec22-RA | 402..1045 | 15..659 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:39:55 Download gff for
BO09278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec22-RA | 402..1045 | 15..659 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:39:55 Download gff for
BO09278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 806477..806559 | 577..659 | 95 | -> | Minus |
X | 806633..806742 | 467..576 | 100 | -> | Minus |
X | 806969..807270 | 165..466 | 100 | -> | Minus |
X | 807354..807502 | 15..164 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:34:30 Download gff for
BO09278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 700510..700592 | 577..659 | 95 | -> | Minus |
arm_X | 700666..700775 | 467..576 | 100 | -> | Minus |
arm_X | 701002..701303 | 165..466 | 100 | -> | Minus |
arm_X | 701387..701535 | 15..164 | 98 | | Minus |
BO09278.5prime Sequence
665 bp (664 high quality bases) assembled on 2006-01-18
> BO09278.5prime
GAAGTTATCAGTCGATATGGCGCTGCTGACCATGATAGCCAGGGTCATCG
ATGGCCTTCCTCTGGTGGGGACCATGCAGGATGACGAGCAGAGCGGACGC
AGCATACTGGACTACCAAAACCAGGCTAAGATGCTCTTCCGCAAGCTGGG
TACCCACTCCCCGGCTCGATGCAGTATCGAGACCGGACCCTACCTATTCC
ACTACCTAATCGAGAACGACGTCTGCTACCTGGTGATGGTGGACAAGATG
TACTCAAAGCGACTGGCCTTCAATTACCTGGAGGACCTGGCCCAGGAGTT
CCATGCTAACTACGGCCGGCGAGTAAACTCAGTGACTCGCCCATACGCAT
TCATCGAGTTTGACGTGTACATACAGAAGGCGAAAAAACAGTTGACGGAC
CGCAGACGCAACATCAGCAACATCAACACACAGCTGCAGGATGTGCAGCG
CATCATGGTGCAAAACATTGACGACGTGCTCCAACGTGGCACAGTGCTGG
CGGAACTCGACACCAAGACCCAGAACCTATCGATGATGTCACAGAAGTAC
AAGAAGGACGCCAAGCTGCTCAACCGAAAGTCCATGTACGTGAAGGCGAT
GGCCTTGGGCATGATACTTCTAGTGTTCATCATGTATTTCTGGGTTCTGG
CAAGCTTTCTAGACC
BO09278.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7359-PA | 636 | CG7359-RA | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:35:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec22-RA | 1743 | CG7359-RA | 410..1042 | 17..649 | 3165 | 100 | Plus |
Sec22-RB | 1749 | CG7359-RB | 410..1048 | 17..649 | 3095 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:35:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 806969..807270 | 202..503 | 1510 | 100 | Plus |
X | 23542271 | X | 807353..807499 | 503..649 | 735 | 100 | Plus |
X | 23542271 | X | 806630..806742 | 89..201 | 565 | 100 | Plus |
X | 23542271 | X | 806485..806559 | 17..91 | 375 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 02:35:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2618..2665 | 382..428 | 111 | 72.9 | Plus |
BO09278.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:32 Download gff for
BO09278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7359-PA | 1..636 | 17..653 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:50 Download gff for
BO09278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7359-PA | 1..636 | 17..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:39:29 Download gff for
BO09278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec22-RA | 402..1045 | 9..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:09:25 Download gff for
BO09278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec22-RA | 402..1045 | 9..653 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:09:25 Download gff for
BO09278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 806633..806742 | 92..201 | 100 | -> | Plus |
X | 806477..806559 | 9..91 | 95 | -> | Plus |
X | 806969..807270 | 202..503 | 100 | -> | Plus |
X | 807354..807502 | 504..653 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:39:29 Download gff for
BO09278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 700510..700592 | 9..91 | 95 | -> | Plus |
arm_X | 700666..700775 | 92..201 | 100 | -> | Plus |
arm_X | 701002..701303 | 202..503 | 100 | -> | Plus |
arm_X | 701387..701535 | 504..653 | 98 | | Plus |
BO09278.complete Sequence
667 bp assembled on 2011-06-28
GenBank Submission: KX796625
> BO09278.complete
GAAGTTATCAGTCGATATGGCGCTGCTGACCATGATAGCCAGGGTCATCG
ATGGCCTTCCTCTGGTGGGGACCATGCAGGATGACGAGCAGAGCGGACGC
AGCATACTGGACTACCAAAACCAGGCTAAGATGCTCTTCCGCAAGCTGGG
TACCCACTCCCCGGCTCGATGCAGTATCGAGACCGGACCCTACCTATTCC
ACTACCTAATCGAGAACGACGTCTGCTACCTGGTGATGGTGGACAAGATG
TACTCAAAGCGACTGGCCTTCAATTACCTGGAGGACCTGGCCCAGGAGTT
CCATGCTAACTACGGCCGGCGAGTAAACTCAGTGACTCGCCCATACGCAT
TCATCGAGTTTGACGTGTACATACAGAAGGCGAAAAAACAGTTGACGGAC
CGCAGACGCAACATCAGCAACATCAACACACAGCTGCAGGATGTGCAGCG
CATCATGGTGCAAAACATTGACGACGTGCTCCAACGTGGCACAGTGCTGG
CGGAACTCGACACCAAGACCCAGAACCTATCGATGATGTCACAGAAGTAC
AAGAAGGACGCCAAGCTGCTCAACCGAAAGTCCATGTACGTGAAGGCGAT
GGCCTTGGGCATGATACTTCTAGTGTTCATCATGTATTTCTGGGTTCTGG
CAAGCTTTCTAGACCAT
BO09278.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:12:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec22-RA | 636 | CG7359-PA | 1..633 | 17..649 | 3165 | 100 | Plus |
Sec22-RB | 642 | CG7359-PB | 1..639 | 17..649 | 3070 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec22-RA | 1743 | CG7359-RA | 410..1042 | 17..649 | 3165 | 100 | Plus |
Sec22-RB | 1749 | CG7359-RB | 410..1048 | 17..649 | 3070 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 806969..807270 | 202..503 | 1510 | 100 | Plus |
X | 23542271 | X | 807353..807499 | 503..649 | 735 | 100 | Plus |
X | 23542271 | X | 806630..806742 | 89..201 | 565 | 100 | Plus |
X | 23542271 | X | 806485..806559 | 17..91 | 375 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:12:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2618..2665 | 382..428 | 111 | 72.9 | Plus |
BO09278.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:19 Download gff for
BO09278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec22-RA | 414..1046 | 17..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:53 Download gff for
BO09278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec22-RA | 410..1042 | 17..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:33 Download gff for
BO09278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec22-RA | 410..1042 | 17..651 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:33 Download gff for
BO09278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 806633..806742 | 92..201 | 100 | -> | Plus |
X | 806485..806559 | 17..91 | 100 | -> | Plus |
X | 806969..807270 | 202..503 | 100 | -> | Plus |
X | 807354..807499 | 504..651 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:53 Download gff for
BO09278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 700666..700775 | 92..201 | 100 | -> | Plus |
arm_X | 700518..700592 | 17..91 | 100 | -> | Plus |
arm_X | 701002..701303 | 202..503 | 100 | -> | Plus |
arm_X | 701387..701532 | 504..651 | 98 | | Plus |
BO09278.pep Sequence
Translation from 16 to 667
> BO09278.pep
MALLTMIARVIDGLPLVGTMQDDEQSGRSILDYQNQAKMLFRKLGTHSPA
RCSIETGPYLFHYLIENDVCYLVMVDKMYSKRLAFNYLEDLAQEFHANYG
RRVNSVTRPYAFIEFDVYIQKAKKQLTDRRRNISNINTQLQDVQRIMVQN
IDDVLQRGTVLAELDTKTQNLSMMSQKYKKDAKLLNRKSMYVKAMALGMI
LLVFIMYFWVLASFLDH
BO09278.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:50:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec22-PA | 211 | CG7359-PA | 1..211 | 1..211 | 1075 | 100 | Plus |
Sec22-PB | 213 | CG7359-PB | 1..213 | 1..211 | 1062 | 99.1 | Plus |
Vamp7-PC | 218 | CG1599-PC | 35..202 | 43..207 | 191 | 28.4 | Plus |
Vamp7-PA | 218 | CG1599-PA | 35..202 | 43..207 | 191 | 28.4 | Plus |