Clone BO09279 Report

Search the DGRC for BO09279

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:92
Well:79
Vector:pDNR-Dual
Associated Gene/Transcriptneur-RB
Protein status:BO09279.pep: validated full length
Sequenced Size:2293

Clone Sequence Records

BO09279.3prime Sequence

981 bp (753 high quality bases) assembled on 2006-01-18

> BO09279.3prime
ATGGTCTAGAAAGCTTGCCGTGGTGTAGGTGCGGATGACGTCCCGGATCA
CCGCCCGGCACAGTGGGCACTGGCCACCACCCACTCCGCGCCACTGCTCG
ATGGCGCAGTCGTAGCACATGCACATGTGTCCGCACATGTACAGCACCGA
GTCGATGGGATTCTCGTAGCAGATGGTGCATTCGGCACTCGAATCGGTGC
TCTGCTGGTCGCTCAGGCTGTCCTTCCACTTGTTGGCCGCATTATTTGTG
CTATTGGCAATGGGCTCGATGTACTGGCTGCTGGTGGTGCTGATAAGGGT
GCCGCTGGAGCAGGCTCCGGCCAGAACACCGCTGGAGGTTACCGTGGCCG
TTGGCCTGGCCGCGAGTTGGCCGTTTATATCGTGCGAGCTGCTAGCAGGT
GGCAGGTTGACCACCAGAACGGTGCCACCACCATTCGGCTGGATCTGGAG
AATATCTCCGTTGGAGGGCATGCTGATCATGCGGCTGCCATTGACTCCGC
CAGCTGAGGCCAAAGTGCTCGTACTCTGGGCTACGCTCAGCTGCGAGGGA
TGATGCAACAGCTTGGCAGTGGCTCCGGCATTCAGACTGCTCATCGACTC
GGTCATGGGCAGCATGCGGGACGTGGAGGCAGCGTTGCAGGCGGACGAGC
TGCTGGCATTCACATTGACCTGCGGCTGCGATGGATACGCAACCATGTTG
GGTAACTGCTGGCGGAACATCCTCAGAGACTGCGTCGAGCCGTAGACATC
CAGGAAGGCCCACAGCTGGAGGGACTGGTCCACATGCATCACCACCACAG
CTGGTCCGTTGTTCTTGCTGATGCTCACTTCACCGTTGGGCGCCACGAAG
AAAGCAATCTCATCGCCGCGCTGAGGAGCAGCTGCAATATCCTTGCTCAC
CACCAGTACTCGGGGCGATCGAGCAGGAAATCCGAATCATTGGGCAAATC
ATTGGGCTGCAACATGGCCGGATTGCAGGAG

BO09279.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG11988-PD 2016 neur-RD 1128..2013 904..19 4405 99.8 Minus
CG11988-PB 2262 neur-RB 1374..2259 904..19 4405 99.8 Minus
CG11988-PC 2019 neur-RC 1128..1768 904..264 3180 99.8 Minus
CG11988-PA 2265 neur-RA 1374..2014 904..264 3180 99.8 Minus
CG11988-PC 2019 neur-RC 1769..2016 266..19 1240 100 Minus
CG11988-PA 2265 neur-RA 2015..2262 266..19 1240 100 Minus
CG11988-PC 2019 neur-RC 1050..1128 981..903 395 100 Minus
CG11988-PA 2265 neur-RA 1296..1374 981..903 395 100 Minus
CG11988-PD 2016 neur-RD 1050..1128 981..903 395 100 Minus
CG11988-PB 2262 neur-RB 1296..1374 981..903 395 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
neur-RB 3989 CG11988-RB 1578..2541 981..19 4780 99.8 Minus
neur-RD 3753 CG11988-RD 1342..2305 981..19 4780 99.8 Minus
neur-RE 3381 CG11988-RE 1342..2308 981..19 4740 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9022104..9022821 265..981 3525 99.7 Plus
3R 32079331 3R 9021796..9022043 19..266 1240 100 Plus
Blast to na_te.dros performed on 2015-01-31 14:52:02 has no hits.

BO09279.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:33 Download gff for BO09279.3prime
Subject Subject Range Query Range Percent Splice Strand
neur-PD 1050..2016 18..981 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:52 Download gff for BO09279.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11988-PB 1296..2262 18..981 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:10:11 Download gff for BO09279.3prime
Subject Subject Range Query Range Percent Splice Strand
neur-RD 1342..2305 19..981 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:32:10 Download gff for BO09279.3prime
Subject Subject Range Query Range Percent Splice Strand
neur-RD 1342..2305 19..981 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:32:10 Download gff for BO09279.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9021796..9022041 19..264 100 <- Plus
3R 9022104..9022821 265..981 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:10:11 Download gff for BO09279.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4847518..4847763 19..264 100 <- Plus
arm_3R 4847826..4848543 265..981 99   Plus

BO09279.5prime Sequence

908 bp (824 high quality bases) assembled on 2006-01-17

> BO09279.5prime
GAAGTTATCAGTCGACATGGGTCTATCGGATATACCAGCCAACTATATGC
AGGGCAGCCATCCGCACCTAACTCTCCATCCGCAGCAGCAGCACCACCAG
AATCAGCAGCACTTGCAGCATCTGCAACAGATGCAGCAGCTGCACAACGC
CATGCCCACTCCCGCCCAGCAGGCCGCCCAGGTCCTGGCCATGGAGTCCA
ACGAGCTGCTCATGAGCACCAAGGACAAGCTCTCTAGCAAGAAGAAAATG
CACTTGCTCAAGAAGATCAAGAAGCGCTTTGGATTGGTTCGCCGCTCACC
CTCTTCATGTCCTGGCCCCAACAACCTGCCTCCGCTGCAATTCCACTCCG
TACATGGCGACAACATCCGAATTTCAAGGGACGGAACCCTGGCCCGTCGC
TTTGAGAGCTTCTGCAGGGCCATCACCTTTTCAGCGCGTCCGGTTCGCAT
CAACGAGAGGATCTGCGTGAAGTTTGCTGAGATCTCGAACAACTGGAACG
GTGGAATTCGCTTTGGATTCACCAGCAACGATCCTGTAACGCTGGAGGGA
ACGCTGCCCAAGTACGCCTGTCCGGATCTGACCAACAGGCCTGGCTTCTG
GGCCAAGGCTCTGCACGAGCAGTACTGCGAGAAGGACAACATACTTTACT
ACTATGTCAATGGAGCTGGCGATGTGATCTATGGTATAAACAACGAGGAG
AAGGGTGTGATACTGACCGGCATCGATACGAGAAGCCTGCTGTGGACGGT
GATCGATATCTATGGCAACTGCACGGGCATTGAGTTTCTCGATTCTCGCA
TTTACATGTACCAGCAGCAGCCAGCGGCTATACAAATGGCCACTGTGCCC
GCCCAGCAACAGCAAATGCCCCAGCCAGCTGCCAATGCCTCCTCCGCCCT
GAATTCCA

BO09279.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG11988-PA 2265 neur-RA 1..891 17..907 4430 99.8 Plus
CG11988-PB 2262 neur-RB 1..891 17..907 4430 99.8 Plus
CG11988-PC 2019 neur-RC 25..645 287..907 3080 99.8 Plus
CG11988-PD 2016 neur-RD 25..645 287..907 3080 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
neur-RB 3989 CG11988-RB 282..1173 16..907 4445 99.9 Plus
neur-RA 3992 CG11988-RA 282..1173 16..907 4445 99.9 Plus
neur-RE 3381 CG11988-RE 317..937 287..907 3090 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9023226..9023846 907..287 3090 99.8 Minus
3R 32079331 3R 9033179..9033450 287..16 1360 100 Minus
Blast to na_te.dros performed on 2015-02-10 02:28:50 has no hits.

BO09279.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:34 Download gff for BO09279.5prime
Subject Subject Range Query Range Percent Splice Strand
neur-PA 1..891 17..907 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:53 Download gff for BO09279.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11988-PB 1..891 17..907 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:39:01 Download gff for BO09279.5prime
Subject Subject Range Query Range Percent Splice Strand
neur-RA 276..1173 9..907 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:08:36 Download gff for BO09279.5prime
Subject Subject Range Query Range Percent Splice Strand
neur-RA 276..1173 9..907 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:08:36 Download gff for BO09279.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9033179..9033456 9..287 98   Minus
3R 9023226..9023845 288..907 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:39:01 Download gff for BO09279.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4848948..4849567 288..907 99 <- Minus
arm_3R 4858901..4859178 9..287 98   Minus

BO09279.complete Sequence

2293 bp (2293 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631460

> BO09279.complete
GAAGTTATCAGTCGACATGGGTCTATCGGATATACCAGCCAACTATATGC
AGGGCAGCCATCCGCACCTAACTCTCCATCCGCAGCAGCAGCACCACCAG
AATCAGCAGCACTTGCAGCATCTGCAACAGATGCAGCAGCTGCACAACGC
CATGCCCACTCCCGCCCAGCAGGCCGCCCAGGTCCTGGCCATGGAGTCCA
ACGAGCTGCTCATGAGCACCAAGGACAAGCTCTCTAGCAAGAAGAAAATG
CACTTGCTCAAGAAGATCAAGAAGCGCTTTGGATTGGTTCGCCGCTCACC
CTCTTCATGTCCTGGCCCCAACAACCTGCCTCCGCTGCAATTCCACTCCG
TACATGGCGACAACATCCGAATTTCAAGGGACGGAACCCTGGCCCGTCGC
TTTGAGAGCTTCTGCAGGGCCATCACCTTTTCAGCGCGTCCGGTTCGCAT
CAACGAGAGGATCTGCGTGAAGTTTGCTGAGATCTCGAACAACTGGAACG
GTGGAATTCGCTTTGGATTCACCAGCAACGATCCTGTAACGCTGGAGGGA
ACGCTGCCCAAGTACGCCTGTCCGGATCTGACCAACAGGCCTGGCTTCTG
GGCCAAGGCTCTGCACGAGCAGTACTGCGAGAAGGACAACATACTTTACT
ACTATGTCAATGGAGCTGGCGATGTGATCTATGGTATAAACAACGAGGAG
AAGGGTGTGATACTGACCGGCATCGATACGAGAAGCCTGCTGTGGACGGT
GATCGATATCTATGGCAACTGCACGGGCATTGAGTTTCTCGATTCTCGCA
TTTACATGTACCAGCAGCAGCCAGCGGCTATACCAATGGCCACTGTGCCC
GCCCAGCAACAGCAAATGCCCCAGCCAGCTGCCAATGCCTCCTCCGCCCT
GAATTCCCATCACCCGCATCAGCAGTCGAGGAGATCCCTGCCAGGACACA
CTGCGGCCATCGAGCACGATCTGGAGCGCCATGTGATGCCGTCCCTGCAA
TCCCTGCACTTGGCAGGAAACGGTGGAAGCGTGGCTAGCGTAGAACAGGC
GGCCATTGCTCATGATTTGGCCAATGGACTGCCTCCTCTGCGCTACAATG
CCAACGGACGACTGATTCCAGTGCCCTTCCACAACACCAAGGGCCGGAAT
GTGCGGCTCTCGCAGGATCGCTTTGTGGCTTCTCGTACGGAATCTGACTT
CTGCCAGGGATATGTGTTCACTGCCCGTCCCATTCGCATTGGTGAGAAGC
TGATTGTGCAGGTCCTGAAAACGGAACAGATGTACGTGGGTGCCTTGGCT
TTGGGTCTGACCTCCTGCAATCCGGCCATGTTGCAGCCCAATGATTTGCC
CAATGATTCGGATTTCCTGCTCGATCGCCCCGAGTACTGGGTGGTGAGCA
AGGATATTGCAGCTGCTCCTCAGCGCGGCGATGAGATTGCCTTCTTCGTG
GCGCCCAACGGTGAAGTGAGCATCAGCAAGAACAACGGACCAGCTGTGGT
GGTGATGCATGTGGACCAGTCCCTCCAGCTGTGGGCCTTCCTGGATGTCT
ACGGCTCGACGCAGTCTCTGAGGATGTTCCGCCAGCAGTTACCCAACATG
GTTGCGTATCCATCGCAGCCGCAGGTCAATGTGAATGCCAGCAGCTCGTC
CGCCTGCAACGCTGCCTCCACGTCCCGCATGCTGCCCATGACCGAGTCGA
TGAGCAGTCTGAATGCCGGAGCCACTGCCAAGCTGTTGCATCATCCCTCG
CAGCTGAGCGTAGCCCAGAGTACGAGCACTTTGGCCTCAGCTGGCGGAGT
CAATGGCAGCCGCATGATCAGCATGCCCTCCAACGGAGATATTCTCCAGA
TCCAGCCGAATGGTGGTGGCACCGTTCTGGTGGTCAACCTGCCACCTGCT
AGCAGCTCGCACGATATAAACGGCCAACTCGCGGCCAGGCCAACGGCCAC
GGTAACCTCCAGCGGTGTTCTGGCCGGAGCCTGCTCCAGCGGCACCCTTA
TCAGCACCACCAGCAGCCAGTACATCGAGCCCATTGCCAATAGCACAAAT
AATGCGGCCAACAAGTGGAAGGACAGCCTGAGCGACCAGCAGAGCACCGA
TTCGAGTGCCGAATGCACCATCTGCTACGAGAATCCCATCGACTCGGTGC
TGTACATGTGCGGACACATGTGCATGTGCTACGACTGCGCCATCGAGCAG
TGGCGCGGAGTGGGTGGTGGCCAGTGCCCACTGTGCCGGGCGGTGATCCG
GGACGTCATCCGCACCTACACCACGGCAAGCTTTCTAGACCAT

BO09279.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
neur-RB 2262 CG11988-PB 1..2259 17..2275 11295 100 Plus
neur-RA 2265 CG11988-PA 1..2262 17..2275 11230 99.9 Plus
neur-RD 2016 CG11988-PD 25..2013 287..2275 9945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
neur-RB 3989 CG11988-RB 282..2541 16..2275 11300 100 Plus
neur-RA 3992 CG11988-RA 282..2544 16..2275 11235 99.9 Plus
neur-RD 3753 CG11988-RD 317..2305 287..2275 9945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:30:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9022104..9023846 2029..287 8715 100 Minus
3R 32079331 3R 9033179..9033450 287..16 1360 100 Minus
3R 32079331 3R 9021796..9022043 2275..2028 1240 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:30:59 has no hits.

BO09279.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:11 Download gff for BO09279.complete
Subject Subject Range Query Range Percent Splice Strand
neur-RB 1..2262 17..2276 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:54:13 Download gff for BO09279.complete
Subject Subject Range Query Range Percent Splice Strand
neur-RB 279..2537 17..2277 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:27 Download gff for BO09279.complete
Subject Subject Range Query Range Percent Splice Strand
neur-RB 283..2541 17..2277 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:11 Download gff for BO09279.complete
Subject Subject Range Query Range Percent Splice Strand
neur-RB 272..2537 9..2275 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:19:39 Download gff for BO09279.complete
Subject Subject Range Query Range Percent Splice Strand
neur-RB 283..2541 17..2277 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:19:39 Download gff for BO09279.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9021794..9022041 2030..2277 99 <- Minus
3R 9022104..9023845 288..2029 100 <- Minus
3R 9033179..9033449 17..287 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:27 Download gff for BO09279.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4847516..4847763 2030..2277 99 <- Minus
arm_3R 4847826..4849567 288..2029 100 <- Minus
arm_3R 4858901..4859171 17..287 100   Minus

BO09279.pep Sequence

Translation from 16 to 2293

> BO09279.pep
MGLSDIPANYMQGSHPHLTLHPQQQHHQNQQHLQHLQQMQQLHNAMPTPA
QQAAQVLAMESNELLMSTKDKLSSKKKMHLLKKIKKRFGLVRRSPSSCPG
PNNLPPLQFHSVHGDNIRISRDGTLARRFESFCRAITFSARPVRINERIC
VKFAEISNNWNGGIRFGFTSNDPVTLEGTLPKYACPDLTNRPGFWAKALH
EQYCEKDNILYYYVNGAGDVIYGINNEEKGVILTGIDTRSLLWTVIDIYG
NCTGIEFLDSRIYMYQQQPAAIPMATVPAQQQQMPQPAANASSALNSHHP
HQQSRRSLPGHTAAIEHDLERHVMPSLQSLHLAGNGGSVASVEQAAIAHD
LANGLPPLRYNANGRLIPVPFHNTKGRNVRLSQDRFVASRTESDFCQGYV
FTARPIRIGEKLIVQVLKTEQMYVGALALGLTSCNPAMLQPNDLPNDSDF
LLDRPEYWVVSKDIAAAPQRGDEIAFFVAPNGEVSISKNNGPAVVVMHVD
QSLQLWAFLDVYGSTQSLRMFRQQLPNMVAYPSQPQVNVNASSSSACNAA
STSRMLPMTESMSSLNAGATAKLLHHPSQLSVAQSTSTLASAGGVNGSRM
ISMPSNGDILQIQPNGGGTVLVVNLPPASSSHDINGQLAARPTATVTSSG
VLAGACSSGTLISTTSSQYIEPIANSTNNAANKWKDSLSDQQSTDSSAEC
TICYENPIDSVLYMCGHMCMCYDCAIEQWRGVGGGQCPLCRAVIRDVIRT
YTTASFLDH

BO09279.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:00
Subject Length Description Subject Range Query Range Score Percent Strand
neur-PB 753 CG11988-PB 1..753 1..753 3955 100 Plus
neur-PA 754 CG11988-PA 1..754 1..753 3943 99.9 Plus
neur-PD 671 CG11988-PD 8..671 90..753 3486 99.8 Plus
neur-PE 672 CG11988-PE 8..672 90..753 3474 99.7 Plus
neur-PC 672 CG11988-PC 8..672 90..753 3474 99.7 Plus