Clone Sequence Records
BO09279.3prime Sequence
981 bp (753 high quality bases) assembled on 2006-01-18
> BO09279.3prime
ATGGTCTAGAAAGCTTGCCGTGGTGTAGGTGCGGATGACGTCCCGGATCA
CCGCCCGGCACAGTGGGCACTGGCCACCACCCACTCCGCGCCACTGCTCG
ATGGCGCAGTCGTAGCACATGCACATGTGTCCGCACATGTACAGCACCGA
GTCGATGGGATTCTCGTAGCAGATGGTGCATTCGGCACTCGAATCGGTGC
TCTGCTGGTCGCTCAGGCTGTCCTTCCACTTGTTGGCCGCATTATTTGTG
CTATTGGCAATGGGCTCGATGTACTGGCTGCTGGTGGTGCTGATAAGGGT
GCCGCTGGAGCAGGCTCCGGCCAGAACACCGCTGGAGGTTACCGTGGCCG
TTGGCCTGGCCGCGAGTTGGCCGTTTATATCGTGCGAGCTGCTAGCAGGT
GGCAGGTTGACCACCAGAACGGTGCCACCACCATTCGGCTGGATCTGGAG
AATATCTCCGTTGGAGGGCATGCTGATCATGCGGCTGCCATTGACTCCGC
CAGCTGAGGCCAAAGTGCTCGTACTCTGGGCTACGCTCAGCTGCGAGGGA
TGATGCAACAGCTTGGCAGTGGCTCCGGCATTCAGACTGCTCATCGACTC
GGTCATGGGCAGCATGCGGGACGTGGAGGCAGCGTTGCAGGCGGACGAGC
TGCTGGCATTCACATTGACCTGCGGCTGCGATGGATACGCAACCATGTTG
GGTAACTGCTGGCGGAACATCCTCAGAGACTGCGTCGAGCCGTAGACATC
CAGGAAGGCCCACAGCTGGAGGGACTGGTCCACATGCATCACCACCACAG
CTGGTCCGTTGTTCTTGCTGATGCTCACTTCACCGTTGGGCGCCACGAAG
AAAGCAATCTCATCGCCGCGCTGAGGAGCAGCTGCAATATCCTTGCTCAC
CACCAGTACTCGGGGCGATCGAGCAGGAAATCCGAATCATTGGGCAAATC
ATTGGGCTGCAACATGGCCGGATTGCAGGAG
BO09279.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11988-PD | 2016 | neur-RD | 1128..2013 | 904..19 | 4405 | 99.8 | Minus |
CG11988-PB | 2262 | neur-RB | 1374..2259 | 904..19 | 4405 | 99.8 | Minus |
CG11988-PC | 2019 | neur-RC | 1128..1768 | 904..264 | 3180 | 99.8 | Minus |
CG11988-PA | 2265 | neur-RA | 1374..2014 | 904..264 | 3180 | 99.8 | Minus |
CG11988-PC | 2019 | neur-RC | 1769..2016 | 266..19 | 1240 | 100 | Minus |
CG11988-PA | 2265 | neur-RA | 2015..2262 | 266..19 | 1240 | 100 | Minus |
CG11988-PC | 2019 | neur-RC | 1050..1128 | 981..903 | 395 | 100 | Minus |
CG11988-PA | 2265 | neur-RA | 1296..1374 | 981..903 | 395 | 100 | Minus |
CG11988-PD | 2016 | neur-RD | 1050..1128 | 981..903 | 395 | 100 | Minus |
CG11988-PB | 2262 | neur-RB | 1296..1374 | 981..903 | 395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:52:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
neur-RB | 3989 | CG11988-RB | 1578..2541 | 981..19 | 4780 | 99.8 | Minus |
neur-RD | 3753 | CG11988-RD | 1342..2305 | 981..19 | 4780 | 99.8 | Minus |
neur-RE | 3381 | CG11988-RE | 1342..2308 | 981..19 | 4740 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:51:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9022104..9022821 | 265..981 | 3525 | 99.7 | Plus |
3R | 32079331 | 3R | 9021796..9022043 | 19..266 | 1240 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 14:52:02 has no hits.
BO09279.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:33 Download gff for
BO09279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neur-PD | 1050..2016 | 18..981 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:52 Download gff for
BO09279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11988-PB | 1296..2262 | 18..981 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:10:11 Download gff for
BO09279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neur-RD | 1342..2305 | 19..981 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:32:10 Download gff for
BO09279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neur-RD | 1342..2305 | 19..981 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:32:10 Download gff for
BO09279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9021796..9022041 | 19..264 | 100 | <- | Plus |
3R | 9022104..9022821 | 265..981 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:10:11 Download gff for
BO09279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4847518..4847763 | 19..264 | 100 | <- | Plus |
arm_3R | 4847826..4848543 | 265..981 | 99 | | Plus |
BO09279.5prime Sequence
908 bp (824 high quality bases) assembled on 2006-01-17
> BO09279.5prime
GAAGTTATCAGTCGACATGGGTCTATCGGATATACCAGCCAACTATATGC
AGGGCAGCCATCCGCACCTAACTCTCCATCCGCAGCAGCAGCACCACCAG
AATCAGCAGCACTTGCAGCATCTGCAACAGATGCAGCAGCTGCACAACGC
CATGCCCACTCCCGCCCAGCAGGCCGCCCAGGTCCTGGCCATGGAGTCCA
ACGAGCTGCTCATGAGCACCAAGGACAAGCTCTCTAGCAAGAAGAAAATG
CACTTGCTCAAGAAGATCAAGAAGCGCTTTGGATTGGTTCGCCGCTCACC
CTCTTCATGTCCTGGCCCCAACAACCTGCCTCCGCTGCAATTCCACTCCG
TACATGGCGACAACATCCGAATTTCAAGGGACGGAACCCTGGCCCGTCGC
TTTGAGAGCTTCTGCAGGGCCATCACCTTTTCAGCGCGTCCGGTTCGCAT
CAACGAGAGGATCTGCGTGAAGTTTGCTGAGATCTCGAACAACTGGAACG
GTGGAATTCGCTTTGGATTCACCAGCAACGATCCTGTAACGCTGGAGGGA
ACGCTGCCCAAGTACGCCTGTCCGGATCTGACCAACAGGCCTGGCTTCTG
GGCCAAGGCTCTGCACGAGCAGTACTGCGAGAAGGACAACATACTTTACT
ACTATGTCAATGGAGCTGGCGATGTGATCTATGGTATAAACAACGAGGAG
AAGGGTGTGATACTGACCGGCATCGATACGAGAAGCCTGCTGTGGACGGT
GATCGATATCTATGGCAACTGCACGGGCATTGAGTTTCTCGATTCTCGCA
TTTACATGTACCAGCAGCAGCCAGCGGCTATACAAATGGCCACTGTGCCC
GCCCAGCAACAGCAAATGCCCCAGCCAGCTGCCAATGCCTCCTCCGCCCT
GAATTCCA
BO09279.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11988-PA | 2265 | neur-RA | 1..891 | 17..907 | 4430 | 99.8 | Plus |
CG11988-PB | 2262 | neur-RB | 1..891 | 17..907 | 4430 | 99.8 | Plus |
CG11988-PC | 2019 | neur-RC | 25..645 | 287..907 | 3080 | 99.8 | Plus |
CG11988-PD | 2016 | neur-RD | 25..645 | 287..907 | 3080 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:28:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
neur-RB | 3989 | CG11988-RB | 282..1173 | 16..907 | 4445 | 99.9 | Plus |
neur-RA | 3992 | CG11988-RA | 282..1173 | 16..907 | 4445 | 99.9 | Plus |
neur-RE | 3381 | CG11988-RE | 317..937 | 287..907 | 3090 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:28:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9023226..9023846 | 907..287 | 3090 | 99.8 | Minus |
3R | 32079331 | 3R | 9033179..9033450 | 287..16 | 1360 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 02:28:50 has no hits.
BO09279.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:34 Download gff for
BO09279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neur-PA | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:53 Download gff for
BO09279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11988-PB | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:39:01 Download gff for
BO09279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neur-RA | 276..1173 | 9..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:08:36 Download gff for
BO09279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neur-RA | 276..1173 | 9..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:08:36 Download gff for
BO09279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9033179..9033456 | 9..287 | 98 | | Minus |
3R | 9023226..9023845 | 288..907 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:39:01 Download gff for
BO09279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4848948..4849567 | 288..907 | 99 | <- | Minus |
arm_3R | 4858901..4859178 | 9..287 | 98 | | Minus |
BO09279.complete Sequence
2293 bp (2293 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631460
> BO09279.complete
GAAGTTATCAGTCGACATGGGTCTATCGGATATACCAGCCAACTATATGC
AGGGCAGCCATCCGCACCTAACTCTCCATCCGCAGCAGCAGCACCACCAG
AATCAGCAGCACTTGCAGCATCTGCAACAGATGCAGCAGCTGCACAACGC
CATGCCCACTCCCGCCCAGCAGGCCGCCCAGGTCCTGGCCATGGAGTCCA
ACGAGCTGCTCATGAGCACCAAGGACAAGCTCTCTAGCAAGAAGAAAATG
CACTTGCTCAAGAAGATCAAGAAGCGCTTTGGATTGGTTCGCCGCTCACC
CTCTTCATGTCCTGGCCCCAACAACCTGCCTCCGCTGCAATTCCACTCCG
TACATGGCGACAACATCCGAATTTCAAGGGACGGAACCCTGGCCCGTCGC
TTTGAGAGCTTCTGCAGGGCCATCACCTTTTCAGCGCGTCCGGTTCGCAT
CAACGAGAGGATCTGCGTGAAGTTTGCTGAGATCTCGAACAACTGGAACG
GTGGAATTCGCTTTGGATTCACCAGCAACGATCCTGTAACGCTGGAGGGA
ACGCTGCCCAAGTACGCCTGTCCGGATCTGACCAACAGGCCTGGCTTCTG
GGCCAAGGCTCTGCACGAGCAGTACTGCGAGAAGGACAACATACTTTACT
ACTATGTCAATGGAGCTGGCGATGTGATCTATGGTATAAACAACGAGGAG
AAGGGTGTGATACTGACCGGCATCGATACGAGAAGCCTGCTGTGGACGGT
GATCGATATCTATGGCAACTGCACGGGCATTGAGTTTCTCGATTCTCGCA
TTTACATGTACCAGCAGCAGCCAGCGGCTATACCAATGGCCACTGTGCCC
GCCCAGCAACAGCAAATGCCCCAGCCAGCTGCCAATGCCTCCTCCGCCCT
GAATTCCCATCACCCGCATCAGCAGTCGAGGAGATCCCTGCCAGGACACA
CTGCGGCCATCGAGCACGATCTGGAGCGCCATGTGATGCCGTCCCTGCAA
TCCCTGCACTTGGCAGGAAACGGTGGAAGCGTGGCTAGCGTAGAACAGGC
GGCCATTGCTCATGATTTGGCCAATGGACTGCCTCCTCTGCGCTACAATG
CCAACGGACGACTGATTCCAGTGCCCTTCCACAACACCAAGGGCCGGAAT
GTGCGGCTCTCGCAGGATCGCTTTGTGGCTTCTCGTACGGAATCTGACTT
CTGCCAGGGATATGTGTTCACTGCCCGTCCCATTCGCATTGGTGAGAAGC
TGATTGTGCAGGTCCTGAAAACGGAACAGATGTACGTGGGTGCCTTGGCT
TTGGGTCTGACCTCCTGCAATCCGGCCATGTTGCAGCCCAATGATTTGCC
CAATGATTCGGATTTCCTGCTCGATCGCCCCGAGTACTGGGTGGTGAGCA
AGGATATTGCAGCTGCTCCTCAGCGCGGCGATGAGATTGCCTTCTTCGTG
GCGCCCAACGGTGAAGTGAGCATCAGCAAGAACAACGGACCAGCTGTGGT
GGTGATGCATGTGGACCAGTCCCTCCAGCTGTGGGCCTTCCTGGATGTCT
ACGGCTCGACGCAGTCTCTGAGGATGTTCCGCCAGCAGTTACCCAACATG
GTTGCGTATCCATCGCAGCCGCAGGTCAATGTGAATGCCAGCAGCTCGTC
CGCCTGCAACGCTGCCTCCACGTCCCGCATGCTGCCCATGACCGAGTCGA
TGAGCAGTCTGAATGCCGGAGCCACTGCCAAGCTGTTGCATCATCCCTCG
CAGCTGAGCGTAGCCCAGAGTACGAGCACTTTGGCCTCAGCTGGCGGAGT
CAATGGCAGCCGCATGATCAGCATGCCCTCCAACGGAGATATTCTCCAGA
TCCAGCCGAATGGTGGTGGCACCGTTCTGGTGGTCAACCTGCCACCTGCT
AGCAGCTCGCACGATATAAACGGCCAACTCGCGGCCAGGCCAACGGCCAC
GGTAACCTCCAGCGGTGTTCTGGCCGGAGCCTGCTCCAGCGGCACCCTTA
TCAGCACCACCAGCAGCCAGTACATCGAGCCCATTGCCAATAGCACAAAT
AATGCGGCCAACAAGTGGAAGGACAGCCTGAGCGACCAGCAGAGCACCGA
TTCGAGTGCCGAATGCACCATCTGCTACGAGAATCCCATCGACTCGGTGC
TGTACATGTGCGGACACATGTGCATGTGCTACGACTGCGCCATCGAGCAG
TGGCGCGGAGTGGGTGGTGGCCAGTGCCCACTGTGCCGGGCGGTGATCCG
GGACGTCATCCGCACCTACACCACGGCAAGCTTTCTAGACCAT
BO09279.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:31:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
neur-RB | 2262 | CG11988-PB | 1..2259 | 17..2275 | 11295 | 100 | Plus |
neur-RA | 2265 | CG11988-PA | 1..2262 | 17..2275 | 11230 | 99.9 | Plus |
neur-RD | 2016 | CG11988-PD | 25..2013 | 287..2275 | 9945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:31:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
neur-RB | 3989 | CG11988-RB | 282..2541 | 16..2275 | 11300 | 100 | Plus |
neur-RA | 3992 | CG11988-RA | 282..2544 | 16..2275 | 11235 | 99.9 | Plus |
neur-RD | 3753 | CG11988-RD | 317..2305 | 287..2275 | 9945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:30:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9022104..9023846 | 2029..287 | 8715 | 100 | Minus |
3R | 32079331 | 3R | 9033179..9033450 | 287..16 | 1360 | 100 | Minus |
3R | 32079331 | 3R | 9021796..9022043 | 2275..2028 | 1240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:30:59 has no hits.
BO09279.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:11 Download gff for
BO09279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neur-RB | 1..2262 | 17..2276 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:54:13 Download gff for
BO09279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neur-RB | 279..2537 | 17..2277 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:27 Download gff for
BO09279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neur-RB | 283..2541 | 17..2277 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:11 Download gff for
BO09279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neur-RB | 272..2537 | 9..2275 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:19:39 Download gff for
BO09279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neur-RB | 283..2541 | 17..2277 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:19:39 Download gff for
BO09279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9021794..9022041 | 2030..2277 | 99 | <- | Minus |
3R | 9022104..9023845 | 288..2029 | 100 | <- | Minus |
3R | 9033179..9033449 | 17..287 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:27 Download gff for
BO09279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4847516..4847763 | 2030..2277 | 99 | <- | Minus |
arm_3R | 4847826..4849567 | 288..2029 | 100 | <- | Minus |
arm_3R | 4858901..4859171 | 17..287 | 100 | | Minus |
BO09279.pep Sequence
Translation from 16 to 2293
> BO09279.pep
MGLSDIPANYMQGSHPHLTLHPQQQHHQNQQHLQHLQQMQQLHNAMPTPA
QQAAQVLAMESNELLMSTKDKLSSKKKMHLLKKIKKRFGLVRRSPSSCPG
PNNLPPLQFHSVHGDNIRISRDGTLARRFESFCRAITFSARPVRINERIC
VKFAEISNNWNGGIRFGFTSNDPVTLEGTLPKYACPDLTNRPGFWAKALH
EQYCEKDNILYYYVNGAGDVIYGINNEEKGVILTGIDTRSLLWTVIDIYG
NCTGIEFLDSRIYMYQQQPAAIPMATVPAQQQQMPQPAANASSALNSHHP
HQQSRRSLPGHTAAIEHDLERHVMPSLQSLHLAGNGGSVASVEQAAIAHD
LANGLPPLRYNANGRLIPVPFHNTKGRNVRLSQDRFVASRTESDFCQGYV
FTARPIRIGEKLIVQVLKTEQMYVGALALGLTSCNPAMLQPNDLPNDSDF
LLDRPEYWVVSKDIAAAPQRGDEIAFFVAPNGEVSISKNNGPAVVVMHVD
QSLQLWAFLDVYGSTQSLRMFRQQLPNMVAYPSQPQVNVNASSSSACNAA
STSRMLPMTESMSSLNAGATAKLLHHPSQLSVAQSTSTLASAGGVNGSRM
ISMPSNGDILQIQPNGGGTVLVVNLPPASSSHDINGQLAARPTATVTSSG
VLAGACSSGTLISTTSSQYIEPIANSTNNAANKWKDSLSDQQSTDSSAEC
TICYENPIDSVLYMCGHMCMCYDCAIEQWRGVGGGQCPLCRAVIRDVIRT
YTTASFLDH
BO09279.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
neur-PB | 753 | CG11988-PB | 1..753 | 1..753 | 3955 | 100 | Plus |
neur-PA | 754 | CG11988-PA | 1..754 | 1..753 | 3943 | 99.9 | Plus |
neur-PD | 671 | CG11988-PD | 8..671 | 90..753 | 3486 | 99.8 | Plus |
neur-PE | 672 | CG11988-PE | 8..672 | 90..753 | 3474 | 99.7 | Plus |
neur-PC | 672 | CG11988-PC | 8..672 | 90..753 | 3474 | 99.7 | Plus |