Clone Sequence Records
BO09280.3prime Sequence
921 bp (807 high quality bases) assembled on 2006-01-18
> BO09280.3prime
ATGGTCTAGAAAGCTTGCGGCTAGCTTATTCAGTGGTATCTCCTCAGTGG
GATGAACCTGATCCTTTGGCTCTGGTTTGCTAGTGCGGCAGCATTTGGTT
TTGATGCCGCCAATATCCTGGCGGCAAATGAGTCCGATGACGATGCCAAT
CACGGCCAGAACCATGATGCAGATGAGCAGCGTGTTGATGGCCTCCTGGG
AGATCTGCACCTGATTGGTCTGGCTCTCGGCAGGCGGCTCCACGCTGACT
CCGCTTGTGCTGGTCTCGGAGCTCAGGATTCCGGCTTTGACCAGCTCCGT
GCTGTTGTCCATTTTGCCCCGATTGCGATTGGCACTTCTGGGCGGTGCGG
GTGTGGCGGTCACTGGCTTTGCAGTGCTGGTGATGCTGGCGACGATGGGC
GGATTTGTAATCCCCTTGAGCGGCGGCTCCGTGGGATAGATGAGACTGCC
GTTGAAGGGGGTGCCCAGTACGAATTCGTAGCAGCTGATGTCGTAGTTGA
GGAAGCTAATCGTGTCGATGGAGGTCAGCAGGCTGCACAGCTCCTCGATG
TTCTGTTGTTCCAGTTCCGGCAGCTTCAGTTTAATTATTTTTGTTAGCGG
CGAGAAAGCTTTCGTATTGATTTGCTGTTTAAAATCGTTCTTGTTCAAGC
GCAACACCTCCAGGCCACTCATGTTCTGGAACGTCTGTTCCGGCAGTTCC
GTCCAGCTGCAGTTGACGCAGCTGAACTCCACCAAGTCGGGCTGGTTCAA
GAAGGATCCGTCCAGGCGCTGGGTTATGGTGTTGTTGCTCAAATCGAGTA
GCGTTAGTTTCCTTGGCCGCCGCAAAGGTGTCGGGATCGATTTTGGTTAG
ACGGTTGTTGGCCAGCCGCAGGCGCTTCAAACGCTCCGATCCCTGAAAGA
CATCCTTGTCTATGCTGCTGA
BO09280.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17667-PA | 1377 | CG17667-RA | 584..1374 | 809..19 | 3955 | 100 | Minus |
CG17667-PB | 1377 | CG17667-RB | 584..1374 | 809..19 | 3955 | 100 | Minus |
CG17667-PA | 1377 | CG17667-RA | 473..585 | 921..809 | 565 | 100 | Minus |
CG17667-PB | 1377 | CG17667-RB | 473..585 | 921..809 | 565 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 06:49:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42709-RC | 2053 | CG42709-RC | 677..1578 | 921..19 | 4490 | 99.9 | Minus |
CG42709-RA | 2186 | CG42709-RA | 810..1711 | 921..19 | 4490 | 99.9 | Minus |
CG42709-RB | 2212 | CG42709-RB | 836..1737 | 921..19 | 4490 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 06:49:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12794793..12795088 | 628..333 | 1480 | 100 | Minus |
3L | 28110227 | 3L | 12794381..12794656 | 901..625 | 1335 | 99.6 | Minus |
3L | 28110227 | 3L | 12795162..12795325 | 333..170 | 820 | 100 | Minus |
3L | 28110227 | 3L | 12795458..12795609 | 170..19 | 760 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 06:49:56 has no hits.
BO09280.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:35 Download gff for
BO09280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17667-PB | 474..1377 | 15..920 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:55 Download gff for
BO09280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17667-PB | 474..1377 | 15..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:07:51 Download gff for
BO09280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42709-RB | 837..1741 | 14..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:38:28 Download gff for
BO09280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42709-RB | 837..1741 | 14..920 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:38:28 Download gff for
BO09280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12794297..12794315 | 902..920 | 100 | -> | Minus |
3L | 12794381..12794656 | 625..901 | 99 | -> | Minus |
3L | 12794797..12795088 | 333..624 | 100 | -> | Minus |
3L | 12795163..12795324 | 171..332 | 100 | -> | Minus |
3L | 12795458..12795612 | 15..170 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:07:51 Download gff for
BO09280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12787397..12787415 | 902..920 | 100 | -> | Minus |
arm_3L | 12787481..12787756 | 625..901 | 99 | -> | Minus |
arm_3L | 12787897..12788188 | 333..624 | 100 | -> | Minus |
arm_3L | 12788263..12788424 | 171..332 | 100 | -> | Minus |
arm_3L | 12788558..12788712 | 15..170 | 98 | -> | Minus |
BO09280.5prime Sequence
901 bp (818 high quality bases) assembled on 2006-01-17
> BO09280.5prime
GAAGTTATCAGTCGACATGCACGTGTACTACAAGTTTGGATTACTGCTGA
TATTTTTGCTAAGCGTGAGCATCAGCCACACAAATGCCGCTCCAGCGGGC
AGTGAGGAGGCAAATCCCCTCGAGGACTTTAATTACGGCGATGATGACTA
CAGTGAAACAGCGACGGGCGAGGAATCGCCGGAGACAGCAGAAAATAGAC
TGATGCCACAATCATCCTCCACATCGACCACCACCACATTTCGACCAATA
TTTAATATACCACGACGCAGCAACCATGTCCTGGAGCCCAGTTGCCCGCG
CAACTGCCTCTGCCTGGAGGACTTCAAGTTCGTTCAGTGTGCCAATGCCC
ATTTGACCCATGTACCCCTGGACATGCCCAAAACGGCGGCCATCATCGAT
CTGAGCCATAATGTGATTGCCGAACTGAGGCCGGAGGATTTTGCCAATCT
GTCCAGGGCGGTGGAAATCAATTTGAATCACAATCTGATCAGCAGCATAG
ACAAGGATGTCTTTCAGGGATCGGAGCGTTTGAAGCGCCTGCGGCTGGCC
AACAACCGTCTAACCAAAATCGATCCCGACACCTTTGCGGCGGCCAAGGA
ACTAACGCTACTCGATTTGAGCAACAACACCATAACCCAGCGCCTGGACG
GATCCTTCTTGAACCAGCCCGACTTGGTGGAGTTCAGCTGCGTCAACTGC
AGCTGGACGGAACTGCCGGAACAGACGTTCCAGAACATGAGTGGCCTGGA
GGTGTTGCGCTTGAACAAGAACGATTTTAAACAGCAAATCAATACGAAAG
CTTTCTCGCCGCTAACAAAAATATTAAACTGAAGCTGCCGGAACTGGACA
ACAGAACATCGAGGAGCTGTGCAGCCTGCTGACCTCCATCGACACGATTA
G
BO09280.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17667-PA | 1377 | CG17667-RA | 1..807 | 17..823 | 4035 | 100 | Plus |
CG17667-PB | 1377 | CG17667-RB | 1..807 | 17..823 | 4035 | 100 | Plus |
CG17667-PA | 1377 | CG17667-RA | 834..887 | 848..901 | 270 | 100 | Plus |
CG17667-PB | 1377 | CG17667-RB | 834..887 | 848..901 | 270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:18:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42709-RC | 2053 | CG42709-RC | 205..1091 | 17..901 | 4385 | 99.8 | Plus |
CG42709-RA | 2186 | CG42709-RA | 338..1224 | 17..901 | 4385 | 99.8 | Plus |
CG42709-RB | 2212 | CG42709-RB | 364..1250 | 17..901 | 4385 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:18:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12794381..12794656 | 509..784 | 1380 | 100 | Plus |
3L | 28110227 | 3L | 12794062..12794317 | 255..510 | 1280 | 100 | Plus |
3L | 28110227 | 3L | 12793814..12794000 | 68..254 | 935 | 100 | Plus |
3L | 28110227 | 3L | 12794793..12794915 | 781..901 | 515 | 98.4 | Plus |
3L | 28110227 | 3L | 12791581..12791633 | 17..69 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 09:18:46 has no hits.
BO09280.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:36 Download gff for
BO09280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17667-PB | 1..887 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:56 Download gff for
BO09280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17667-PB | 1..887 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:22:46 Download gff for
BO09280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42709-RB | 364..1250 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:29:46 Download gff for
BO09280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42709-RB | 364..1250 | 17..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:29:46 Download gff for
BO09280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12791581..12791633 | 17..69 | 100 | -> | Plus |
3L | 12793816..12794000 | 70..254 | 100 | -> | Plus |
3L | 12794062..12794315 | 255..508 | 100 | -> | Plus |
3L | 12794381..12794656 | 509..784 | 100 | -> | Plus |
3L | 12794797..12794915 | 785..901 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:22:46 Download gff for
BO09280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12786916..12787100 | 70..254 | 100 | -> | Plus |
arm_3L | 12787162..12787415 | 255..508 | 100 | -> | Plus |
arm_3L | 12784681..12784733 | 17..69 | 100 | -> | Plus |
arm_3L | 12787481..12787756 | 509..784 | 100 | -> | Plus |
arm_3L | 12787897..12788015 | 785..901 | 98 | | Plus |
BO09280.complete Sequence
1408 bp (1408 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631461
> BO09280.complete
GAAGTTATCAGTCGACATGCACGTGTACTACAAGTTTGGATTACTGCTGA
TATTTTTGCTAAGCGTGAGCATCAGCCACACAAATGCCGCTCCAGCGGGC
AGTGAGGAGGCAAATCCCCTCGAGGACTTTAATTACGGCGATGATGACTA
CAGTGAAACAGCGACGGGCGAGGAATCGCCGGAGACAGCAGAAAATAGAC
TGATGCCACAATCATCCTCCACATCGACCACCACCACATTTCGACCAATA
TTTAATATACCACGACGCAGCAACCATGTCCTGGAGCCCAGTTGCCCGCG
CAACTGCCTCTGCCTGGAGGACTTCAAGTTCGTTCAGTGTGCCAATGCCC
ATTTGACCCATGTACCCCTGGACATGCCCAAAACGGCGGCCATCATCGAT
CTGAGCCATAATGTGATTGCCGAACTGAGGCCGGAGGATTTTGCCAATCT
GTCCAGGGCGGTGGAAATCAATTTGAATCACAATCTGATCAGCAGCATAG
ACAAGGATGTCTTTCAGGGATCGGAGCGTTTGAAGCGCCTGCGGCTGGCC
AACAACCGTCTAACCAAAATCGATCCCGACACCTTTGCGGCGGCCAAGGA
ACTAACGCTACTCGATTTGAGCAACAACACCATAACCCAGCGCCTGGACG
GATCCTTCTTGAACCAGCCCGACTTGGTGGAGTTCAGCTGCGTCAACTGC
AGCTGGACGGAACTGCCGGAACAGACGTTCCAGAACATGAGTGGCCTGGA
GGTGTTGCGCTTGAACAAGAACGATTTTAAACAGCAAATCAATACGAAAG
CTTTCTCGCCGCTAACAAAAATAATTAAACTGAAGCTGCCGGAACTGGAA
CAACAGAACATCGAGGAGCTGTGCAGCCTGCTGACCTCCATCGACACGAT
TAGCTTCCTCAACTACGACATCAGCTGCTACGAATTCGTACTGGGCACCC
CCTTCAACGGCAGTCTCATCTATCCCACGGAGCCGCCGCTCAAGGGGATT
ACAAATCCGCCCATCGTCGCCAGCATCACCAGCACTGCAAAGCCAGTGAC
CGCCACACCCGCACCGCCCAGAAGTGCCAATCGCAATCGGGGCAAAATGG
ACAACAGCACGGAGCTGGTCAAAGCCGGAATCCTGAGCTCCGAGACCAGC
ACAAGCGGAGTCAGCGTGGAGCCGCCTGCCGAGAGCCAGACCAATCAGGT
GCAGATCTCCCAGGAGGCCATCAACACGCTGCTCATCTGCATCATGGTTC
TGGCCGTGATTGGCATCGTCATCGGACTCATTTGCCGCCAGGATATTGGC
GGCATCAAAACCAAATGCTGCCGCACTAGCAAACCAGAGCCAAAGGATCA
GGTTCATCCCACTGAGGAGATACCACTGAATAAGCTAGCCGCAAGCTTTC
TAGACCAT
BO09280.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:26:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42709-RC | 1377 | CG42709-PC | 1..1374 | 17..1390 | 6870 | 100 | Plus |
CG42709-RA | 1377 | CG42709-PA | 1..1374 | 17..1390 | 6870 | 100 | Plus |
CG42709-RB | 1377 | CG42709-PB | 1..1374 | 17..1390 | 6870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:26:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42709-RC | 2053 | CG42709-RC | 205..1578 | 17..1390 | 6870 | 100 | Plus |
CG42709-RA | 2186 | CG42709-RA | 338..1711 | 17..1390 | 6870 | 100 | Plus |
CG42709-RB | 2212 | CG42709-RB | 364..1737 | 17..1390 | 6870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:26:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12794793..12795088 | 781..1076 | 1480 | 100 | Plus |
3L | 28110227 | 3L | 12794381..12794656 | 509..784 | 1380 | 100 | Plus |
3L | 28110227 | 3L | 12794062..12794317 | 255..510 | 1280 | 100 | Plus |
3L | 28110227 | 3L | 12793814..12794000 | 68..254 | 935 | 100 | Plus |
3L | 28110227 | 3L | 12795162..12795325 | 1076..1239 | 820 | 100 | Plus |
3L | 28110227 | 3L | 12795458..12795609 | 1239..1390 | 760 | 100 | Plus |
3L | 28110227 | 3L | 12791581..12791633 | 17..69 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:26:54 has no hits.
BO09280.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:40 Download gff for
BO09280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17667-RB | 1..1377 | 17..1394 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:14 Download gff for
BO09280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17667-RB | 716..2093 | 17..1395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:21 Download gff for
BO09280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42709-RB | 364..1737 | 17..1392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:40 Download gff for
BO09280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17667-RB | 716..2093 | 17..1395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:37 Download gff for
BO09280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42709-RB | 364..1737 | 17..1392 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:37 Download gff for
BO09280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12794381..12794656 | 509..784 | 100 | -> | Plus |
3L | 12791581..12791633 | 17..69 | 100 | -> | Plus |
3L | 12793816..12794000 | 70..254 | 100 | -> | Plus |
3L | 12794062..12794315 | 255..508 | 100 | -> | Plus |
3L | 12794797..12795088 | 785..1076 | 100 | -> | Plus |
3L | 12795163..12795324 | 1077..1238 | 100 | -> | Plus |
3L | 12795458..12795609 | 1239..1392 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:21 Download gff for
BO09280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12784681..12784733 | 17..69 | 100 | -> | Plus |
arm_3L | 12786916..12787100 | 70..254 | 100 | -> | Plus |
arm_3L | 12787162..12787415 | 255..508 | 100 | -> | Plus |
arm_3L | 12787481..12787756 | 509..784 | 100 | -> | Plus |
arm_3L | 12787897..12788188 | 785..1076 | 100 | -> | Plus |
arm_3L | 12788263..12788424 | 1077..1238 | 100 | -> | Plus |
arm_3L | 12788558..12788709 | 1239..1392 | 98 | | Plus |
BO09280.pep Sequence
Translation from 16 to 1408
> BO09280.pep
MHVYYKFGLLLIFLLSVSISHTNAAPAGSEEANPLEDFNYGDDDYSETAT
GEESPETAENRLMPQSSSTSTTTTFRPIFNIPRRSNHVLEPSCPRNCLCL
EDFKFVQCANAHLTHVPLDMPKTAAIIDLSHNVIAELRPEDFANLSRAVE
INLNHNLISSIDKDVFQGSERLKRLRLANNRLTKIDPDTFAAAKELTLLD
LSNNTITQRLDGSFLNQPDLVEFSCVNCSWTELPEQTFQNMSGLEVLRLN
KNDFKQQINTKAFSPLTKIIKLKLPELEQQNIEELCSLLTSIDTISFLNY
DISCYEFVLGTPFNGSLIYPTEPPLKGITNPPIVASITSTAKPVTATPAP
PRSANRNRGKMDNSTELVKAGILSSETSTSGVSVEPPAESQTNQVQISQE
AINTLLICIMVLAVIGIVIGLICRQDIGGIKTKCCRTSKPEPKDQVHPTE
EIPLNKLAASFLDH
BO09280.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42709-PC | 458 | CG17667-PC | 1..458 | 1..458 | 2359 | 100 | Plus |
CG42709-PA | 458 | CG17667-PA | 1..458 | 1..458 | 2359 | 100 | Plus |
CG42709-PB | 458 | CG17667-PB | 1..458 | 1..458 | 2359 | 100 | Plus |
CG42709-PD | 457 | CG42709-PD | 1..457 | 1..458 | 2340 | 99.6 | Plus |
CG7509-PA | 615 | CG7509-PA | 154..370 | 97..314 | 206 | 29 | Plus |