Clone BO09280 Report

Search the DGRC for BO09280

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:92
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG42709-RA
Protein status:BO09280.pep: validated full length
Sequenced Size:1408

Clone Sequence Records

BO09280.3prime Sequence

921 bp (807 high quality bases) assembled on 2006-01-18

> BO09280.3prime
ATGGTCTAGAAAGCTTGCGGCTAGCTTATTCAGTGGTATCTCCTCAGTGG
GATGAACCTGATCCTTTGGCTCTGGTTTGCTAGTGCGGCAGCATTTGGTT
TTGATGCCGCCAATATCCTGGCGGCAAATGAGTCCGATGACGATGCCAAT
CACGGCCAGAACCATGATGCAGATGAGCAGCGTGTTGATGGCCTCCTGGG
AGATCTGCACCTGATTGGTCTGGCTCTCGGCAGGCGGCTCCACGCTGACT
CCGCTTGTGCTGGTCTCGGAGCTCAGGATTCCGGCTTTGACCAGCTCCGT
GCTGTTGTCCATTTTGCCCCGATTGCGATTGGCACTTCTGGGCGGTGCGG
GTGTGGCGGTCACTGGCTTTGCAGTGCTGGTGATGCTGGCGACGATGGGC
GGATTTGTAATCCCCTTGAGCGGCGGCTCCGTGGGATAGATGAGACTGCC
GTTGAAGGGGGTGCCCAGTACGAATTCGTAGCAGCTGATGTCGTAGTTGA
GGAAGCTAATCGTGTCGATGGAGGTCAGCAGGCTGCACAGCTCCTCGATG
TTCTGTTGTTCCAGTTCCGGCAGCTTCAGTTTAATTATTTTTGTTAGCGG
CGAGAAAGCTTTCGTATTGATTTGCTGTTTAAAATCGTTCTTGTTCAAGC
GCAACACCTCCAGGCCACTCATGTTCTGGAACGTCTGTTCCGGCAGTTCC
GTCCAGCTGCAGTTGACGCAGCTGAACTCCACCAAGTCGGGCTGGTTCAA
GAAGGATCCGTCCAGGCGCTGGGTTATGGTGTTGTTGCTCAAATCGAGTA
GCGTTAGTTTCCTTGGCCGCCGCAAAGGTGTCGGGATCGATTTTGGTTAG
ACGGTTGTTGGCCAGCCGCAGGCGCTTCAAACGCTCCGATCCCTGAAAGA
CATCCTTGTCTATGCTGCTGA

BO09280.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG17667-PA 1377 CG17667-RA 584..1374 809..19 3955 100 Minus
CG17667-PB 1377 CG17667-RB 584..1374 809..19 3955 100 Minus
CG17667-PA 1377 CG17667-RA 473..585 921..809 565 100 Minus
CG17667-PB 1377 CG17667-RB 473..585 921..809 565 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 06:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG42709-RC 2053 CG42709-RC 677..1578 921..19 4490 99.9 Minus
CG42709-RA 2186 CG42709-RA 810..1711 921..19 4490 99.9 Minus
CG42709-RB 2212 CG42709-RB 836..1737 921..19 4490 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 06:49:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12794793..12795088 628..333 1480 100 Minus
3L 28110227 3L 12794381..12794656 901..625 1335 99.6 Minus
3L 28110227 3L 12795162..12795325 333..170 820 100 Minus
3L 28110227 3L 12795458..12795609 170..19 760 100 Minus
Blast to na_te.dros performed on 2015-02-01 06:49:56 has no hits.

BO09280.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:35 Download gff for BO09280.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17667-PB 474..1377 15..920 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:55 Download gff for BO09280.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17667-PB 474..1377 15..920 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:07:51 Download gff for BO09280.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42709-RB 837..1741 14..920 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:38:28 Download gff for BO09280.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42709-RB 837..1741 14..920 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:38:28 Download gff for BO09280.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12794297..12794315 902..920 100 -> Minus
3L 12794381..12794656 625..901 99 -> Minus
3L 12794797..12795088 333..624 100 -> Minus
3L 12795163..12795324 171..332 100 -> Minus
3L 12795458..12795612 15..170 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:07:51 Download gff for BO09280.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12787397..12787415 902..920 100 -> Minus
arm_3L 12787481..12787756 625..901 99 -> Minus
arm_3L 12787897..12788188 333..624 100 -> Minus
arm_3L 12788263..12788424 171..332 100 -> Minus
arm_3L 12788558..12788712 15..170 98 -> Minus

BO09280.5prime Sequence

901 bp (818 high quality bases) assembled on 2006-01-17

> BO09280.5prime
GAAGTTATCAGTCGACATGCACGTGTACTACAAGTTTGGATTACTGCTGA
TATTTTTGCTAAGCGTGAGCATCAGCCACACAAATGCCGCTCCAGCGGGC
AGTGAGGAGGCAAATCCCCTCGAGGACTTTAATTACGGCGATGATGACTA
CAGTGAAACAGCGACGGGCGAGGAATCGCCGGAGACAGCAGAAAATAGAC
TGATGCCACAATCATCCTCCACATCGACCACCACCACATTTCGACCAATA
TTTAATATACCACGACGCAGCAACCATGTCCTGGAGCCCAGTTGCCCGCG
CAACTGCCTCTGCCTGGAGGACTTCAAGTTCGTTCAGTGTGCCAATGCCC
ATTTGACCCATGTACCCCTGGACATGCCCAAAACGGCGGCCATCATCGAT
CTGAGCCATAATGTGATTGCCGAACTGAGGCCGGAGGATTTTGCCAATCT
GTCCAGGGCGGTGGAAATCAATTTGAATCACAATCTGATCAGCAGCATAG
ACAAGGATGTCTTTCAGGGATCGGAGCGTTTGAAGCGCCTGCGGCTGGCC
AACAACCGTCTAACCAAAATCGATCCCGACACCTTTGCGGCGGCCAAGGA
ACTAACGCTACTCGATTTGAGCAACAACACCATAACCCAGCGCCTGGACG
GATCCTTCTTGAACCAGCCCGACTTGGTGGAGTTCAGCTGCGTCAACTGC
AGCTGGACGGAACTGCCGGAACAGACGTTCCAGAACATGAGTGGCCTGGA
GGTGTTGCGCTTGAACAAGAACGATTTTAAACAGCAAATCAATACGAAAG
CTTTCTCGCCGCTAACAAAAATATTAAACTGAAGCTGCCGGAACTGGACA
ACAGAACATCGAGGAGCTGTGCAGCCTGCTGACCTCCATCGACACGATTA
G

BO09280.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG17667-PA 1377 CG17667-RA 1..807 17..823 4035 100 Plus
CG17667-PB 1377 CG17667-RB 1..807 17..823 4035 100 Plus
CG17667-PA 1377 CG17667-RA 834..887 848..901 270 100 Plus
CG17667-PB 1377 CG17667-RB 834..887 848..901 270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG42709-RC 2053 CG42709-RC 205..1091 17..901 4385 99.8 Plus
CG42709-RA 2186 CG42709-RA 338..1224 17..901 4385 99.8 Plus
CG42709-RB 2212 CG42709-RB 364..1250 17..901 4385 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:18:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12794381..12794656 509..784 1380 100 Plus
3L 28110227 3L 12794062..12794317 255..510 1280 100 Plus
3L 28110227 3L 12793814..12794000 68..254 935 100 Plus
3L 28110227 3L 12794793..12794915 781..901 515 98.4 Plus
3L 28110227 3L 12791581..12791633 17..69 265 100 Plus
Blast to na_te.dros performed on 2015-02-02 09:18:46 has no hits.

BO09280.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:36 Download gff for BO09280.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17667-PB 1..887 17..901 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:56 Download gff for BO09280.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17667-PB 1..887 17..901 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:22:46 Download gff for BO09280.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42709-RB 364..1250 17..901 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:29:46 Download gff for BO09280.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42709-RB 364..1250 17..901 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:29:46 Download gff for BO09280.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12791581..12791633 17..69 100 -> Plus
3L 12793816..12794000 70..254 100 -> Plus
3L 12794062..12794315 255..508 100 -> Plus
3L 12794381..12794656 509..784 100 -> Plus
3L 12794797..12794915 785..901 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:22:46 Download gff for BO09280.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12786916..12787100 70..254 100 -> Plus
arm_3L 12787162..12787415 255..508 100 -> Plus
arm_3L 12784681..12784733 17..69 100 -> Plus
arm_3L 12787481..12787756 509..784 100 -> Plus
arm_3L 12787897..12788015 785..901 98   Plus

BO09280.complete Sequence

1408 bp (1408 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631461

> BO09280.complete
GAAGTTATCAGTCGACATGCACGTGTACTACAAGTTTGGATTACTGCTGA
TATTTTTGCTAAGCGTGAGCATCAGCCACACAAATGCCGCTCCAGCGGGC
AGTGAGGAGGCAAATCCCCTCGAGGACTTTAATTACGGCGATGATGACTA
CAGTGAAACAGCGACGGGCGAGGAATCGCCGGAGACAGCAGAAAATAGAC
TGATGCCACAATCATCCTCCACATCGACCACCACCACATTTCGACCAATA
TTTAATATACCACGACGCAGCAACCATGTCCTGGAGCCCAGTTGCCCGCG
CAACTGCCTCTGCCTGGAGGACTTCAAGTTCGTTCAGTGTGCCAATGCCC
ATTTGACCCATGTACCCCTGGACATGCCCAAAACGGCGGCCATCATCGAT
CTGAGCCATAATGTGATTGCCGAACTGAGGCCGGAGGATTTTGCCAATCT
GTCCAGGGCGGTGGAAATCAATTTGAATCACAATCTGATCAGCAGCATAG
ACAAGGATGTCTTTCAGGGATCGGAGCGTTTGAAGCGCCTGCGGCTGGCC
AACAACCGTCTAACCAAAATCGATCCCGACACCTTTGCGGCGGCCAAGGA
ACTAACGCTACTCGATTTGAGCAACAACACCATAACCCAGCGCCTGGACG
GATCCTTCTTGAACCAGCCCGACTTGGTGGAGTTCAGCTGCGTCAACTGC
AGCTGGACGGAACTGCCGGAACAGACGTTCCAGAACATGAGTGGCCTGGA
GGTGTTGCGCTTGAACAAGAACGATTTTAAACAGCAAATCAATACGAAAG
CTTTCTCGCCGCTAACAAAAATAATTAAACTGAAGCTGCCGGAACTGGAA
CAACAGAACATCGAGGAGCTGTGCAGCCTGCTGACCTCCATCGACACGAT
TAGCTTCCTCAACTACGACATCAGCTGCTACGAATTCGTACTGGGCACCC
CCTTCAACGGCAGTCTCATCTATCCCACGGAGCCGCCGCTCAAGGGGATT
ACAAATCCGCCCATCGTCGCCAGCATCACCAGCACTGCAAAGCCAGTGAC
CGCCACACCCGCACCGCCCAGAAGTGCCAATCGCAATCGGGGCAAAATGG
ACAACAGCACGGAGCTGGTCAAAGCCGGAATCCTGAGCTCCGAGACCAGC
ACAAGCGGAGTCAGCGTGGAGCCGCCTGCCGAGAGCCAGACCAATCAGGT
GCAGATCTCCCAGGAGGCCATCAACACGCTGCTCATCTGCATCATGGTTC
TGGCCGTGATTGGCATCGTCATCGGACTCATTTGCCGCCAGGATATTGGC
GGCATCAAAACCAAATGCTGCCGCACTAGCAAACCAGAGCCAAAGGATCA
GGTTCATCCCACTGAGGAGATACCACTGAATAAGCTAGCCGCAAGCTTTC
TAGACCAT

BO09280.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG42709-RC 1377 CG42709-PC 1..1374 17..1390 6870 100 Plus
CG42709-RA 1377 CG42709-PA 1..1374 17..1390 6870 100 Plus
CG42709-RB 1377 CG42709-PB 1..1374 17..1390 6870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG42709-RC 2053 CG42709-RC 205..1578 17..1390 6870 100 Plus
CG42709-RA 2186 CG42709-RA 338..1711 17..1390 6870 100 Plus
CG42709-RB 2212 CG42709-RB 364..1737 17..1390 6870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12794793..12795088 781..1076 1480 100 Plus
3L 28110227 3L 12794381..12794656 509..784 1380 100 Plus
3L 28110227 3L 12794062..12794317 255..510 1280 100 Plus
3L 28110227 3L 12793814..12794000 68..254 935 100 Plus
3L 28110227 3L 12795162..12795325 1076..1239 820 100 Plus
3L 28110227 3L 12795458..12795609 1239..1390 760 100 Plus
3L 28110227 3L 12791581..12791633 17..69 265 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:26:54 has no hits.

BO09280.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:40 Download gff for BO09280.complete
Subject Subject Range Query Range Percent Splice Strand
CG17667-RB 1..1377 17..1394 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:14 Download gff for BO09280.complete
Subject Subject Range Query Range Percent Splice Strand
CG17667-RB 716..2093 17..1395 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:21 Download gff for BO09280.complete
Subject Subject Range Query Range Percent Splice Strand
CG42709-RB 364..1737 17..1392 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:40 Download gff for BO09280.complete
Subject Subject Range Query Range Percent Splice Strand
CG17667-RB 716..2093 17..1395 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:37 Download gff for BO09280.complete
Subject Subject Range Query Range Percent Splice Strand
CG42709-RB 364..1737 17..1392 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:37 Download gff for BO09280.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12794381..12794656 509..784 100 -> Plus
3L 12791581..12791633 17..69 100 -> Plus
3L 12793816..12794000 70..254 100 -> Plus
3L 12794062..12794315 255..508 100 -> Plus
3L 12794797..12795088 785..1076 100 -> Plus
3L 12795163..12795324 1077..1238 100 -> Plus
3L 12795458..12795609 1239..1392 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:21 Download gff for BO09280.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12784681..12784733 17..69 100 -> Plus
arm_3L 12786916..12787100 70..254 100 -> Plus
arm_3L 12787162..12787415 255..508 100 -> Plus
arm_3L 12787481..12787756 509..784 100 -> Plus
arm_3L 12787897..12788188 785..1076 100 -> Plus
arm_3L 12788263..12788424 1077..1238 100 -> Plus
arm_3L 12788558..12788709 1239..1392 98   Plus

BO09280.pep Sequence

Translation from 16 to 1408

> BO09280.pep
MHVYYKFGLLLIFLLSVSISHTNAAPAGSEEANPLEDFNYGDDDYSETAT
GEESPETAENRLMPQSSSTSTTTTFRPIFNIPRRSNHVLEPSCPRNCLCL
EDFKFVQCANAHLTHVPLDMPKTAAIIDLSHNVIAELRPEDFANLSRAVE
INLNHNLISSIDKDVFQGSERLKRLRLANNRLTKIDPDTFAAAKELTLLD
LSNNTITQRLDGSFLNQPDLVEFSCVNCSWTELPEQTFQNMSGLEVLRLN
KNDFKQQINTKAFSPLTKIIKLKLPELEQQNIEELCSLLTSIDTISFLNY
DISCYEFVLGTPFNGSLIYPTEPPLKGITNPPIVASITSTAKPVTATPAP
PRSANRNRGKMDNSTELVKAGILSSETSTSGVSVEPPAESQTNQVQISQE
AINTLLICIMVLAVIGIVIGLICRQDIGGIKTKCCRTSKPEPKDQVHPTE
EIPLNKLAASFLDH

BO09280.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG42709-PC 458 CG17667-PC 1..458 1..458 2359 100 Plus
CG42709-PA 458 CG17667-PA 1..458 1..458 2359 100 Plus
CG42709-PB 458 CG17667-PB 1..458 1..458 2359 100 Plus
CG42709-PD 457 CG42709-PD 1..457 1..458 2340 99.6 Plus
CG7509-PA 615 CG7509-PA 154..370 97..314 206 29 Plus