Clone BO09284 Report

Search the DGRC for BO09284

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:92
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptREG-RA
Protein status:BO09284.pep: validated full length
Sequenced Size:769

Clone Sequence Records

BO09284.3prime Sequence

767 bp (766 high quality bases) assembled on 2006-01-18

> BO09284.3prime
ATGGTCTAGAAAGCTTGCATACAGGCTTTCGGTATTTGAGGAGCGCGGCT
TCTTTAGCTTCTCGAGGTTCTTAATAACAATGTCGTGCAGCGAGGAGTAG
CGATTGCGGACCTCACAAACGACCAGCCACAAGCTGAGGTACTCCTTCTC
GTCAAGTTCGACGACTGCGCGCCGATAATCATCGATGTGCGGATACTTGG
CCACCTTGGACACCACCTTGGCGCGCGACAAGAAATAGCGCGATATCTGG
TCAAAGAAGGCGGCCGCCTCGGATTCCACAGTTTGAATTTCGGCAAGCGT
GTCCTCTTGAATGGAGACGCCAAAGTTGTTGCCATCCTCGATCTTGGGTA
TCATAAAGGAGATCCACATCTTAAGTAGATTGGAATCCTCCACAAGCTTC
CTGATGATAGGCTTGACGACCTTGATCATCTCGCAGAGCGGCTTGTTGCA
CGGCACTGTACCGGCGGGCAGACCCATGACAGGCTGCCCAGAGACGATGA
CATCCACGCGCTGGCGCTTGGTGGGCAGACTGTCACGATCCTCCAACTCG
TTTTTAACCAGGAGAGGCGGCAGGACCGGGATGTTGAGGTCCTGGTGCAC
TTCTTCGAAGTTGCGCTCGTTGAAGATCGGCGTGGCCAGCAGCTCGTTCA
GCCGGACGATATTCTCCGGGAACCCCTTGGTGATTAGCAGCTCTGCCTTG
AGGATCAACGAGTCCTTGTACTCCTGCACCTTTACCACAGTGTCGTTAGG
CATGTCGACTGATAACT

BO09284.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG1591-PA 738 REG-RA 1..735 753..19 3675 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
REG-RB 1830 CG1591-RB 204..942 757..19 3680 99.9 Minus
REG-RA 1370 CG1591-RA 177..915 757..19 3680 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13212585..13212958 757..384 1855 99.7 Minus
X 23542271 X 13213156..13213520 383..19 1825 100 Minus
Blast to na_te.dros performed on 2015-02-10 19:04:17 has no hits.

BO09284.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:44 Download gff for BO09284.3prime
Subject Subject Range Query Range Percent Splice Strand
REG-PA 1..738 18..753 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:09:06 Download gff for BO09284.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1591-PA 1..738 18..753 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:56:08 Download gff for BO09284.3prime
Subject Subject Range Query Range Percent Splice Strand
REG-RA 177..921 12..757 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:25:18 Download gff for BO09284.3prime
Subject Subject Range Query Range Percent Splice Strand
REG-RA 177..921 12..757 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:25:18 Download gff for BO09284.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13212585..13212958 384..757 99 -> Minus
X 13213156..13213526 12..383 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:56:08 Download gff for BO09284.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13106618..13106991 384..757 99 -> Minus
arm_X 13107189..13107559 12..383 99   Minus

BO09284.5prime Sequence

767 bp (766 high quality bases) assembled on 2006-01-18

> BO09284.5prime
GAAGTTATCAGTCGACATGCCTAACGACACTGTGGTAAAGGTGCAGGAGT
ACAAGGACTCGTTGATCCTCAAGGCAGAGCTGCTAATCACCAAGGGGTTC
CCGGAGAATATCGTCCGGCTGAACGAGCTGCTGGCCACGCCGATCTTCAA
CGAGCGCAACTTCGAAGAAGTGCACCAGGACCTCAACATCCCGGTCCTGC
CGCCTCTCCTGGTTAAAAACGAGTTGGAGGATCGTGACAGTCTGCCCACC
AAGCGCCAGCGCGTGGATGTCATCGTCTCTGGGCAGCCTGTCATGGGTCT
GCCCGCCGGTACAGTGCCGTGCAACAAGCCGCTCTGCGAGATGATCAAGG
TCGTCAAGCCTATCATCAGGAAGCTTGTGGAGGATTCCAATCTACTTAAG
ATGTGGATCTCCTTTATGATACCCAAGATCGAGGATGGCAACAACTTTGG
CGTCTCCATTCAAGAGGACACGCTTGCCGAAATTCAAACTGTGGAATCCG
AGGCGGCCGCCTTCTTTGACCAGATATCGCGCTATTTCTTGTCGCGCGCC
AAGGTGGTGTCCAAGGTGGCCAAGTATCCGCACATCGATGATTATCGGCG
CGCAGTCGTCGAACTTGACGAGAAGGAGTACCTCAGCTTGTGGCTGGTCG
TTTGTGAGGTCCGCAATCGCTACTCCTCGCTGCACGACATTGTTATTAAG
AACCTCGAGAAGCTAAAGAAGCCGCGCTCCTCAAATACCGAAAGCCTGTA
TGCAAGCTTTCTAGACC

BO09284.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1591-PA 738 REG-RA 1..735 17..751 3675 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
REG-RB 1830 CG1591-RB 204..942 13..751 3680 99.9 Plus
REG-RA 1370 CG1591-RA 177..915 13..751 3680 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:48:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13212585..13212958 13..386 1855 99.7 Plus
X 23542271 X 13213156..13213520 387..751 1825 100 Plus
Blast to na_te.dros performed on 2015-02-09 09:48:48 has no hits.

BO09284.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:44 Download gff for BO09284.5prime
Subject Subject Range Query Range Percent Splice Strand
REG-PA 1..738 17..752 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:09:07 Download gff for BO09284.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1591-PA 1..738 17..752 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:23:27 Download gff for BO09284.5prime
Subject Subject Range Query Range Percent Splice Strand
REG-RA 177..921 13..758 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:52:51 Download gff for BO09284.5prime
Subject Subject Range Query Range Percent Splice Strand
REG-RA 177..921 13..758 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:52:51 Download gff for BO09284.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13212585..13212958 13..386 99 -> Plus
X 13213156..13213526 387..758 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:23:27 Download gff for BO09284.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13106618..13106991 13..386 99 -> Plus
arm_X 13107189..13107559 387..758 99   Plus

BO09284.complete Sequence

769 bp (769 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ638667

> BO09284.complete
GAAGTTATCAGTCGACATGCCTAACGACACTGTGGTAAAGGTGCAGGAGT
ACAAGGACTCGTTGATCCTCAAGGCAGAGCTGCTAATCACCAAGGGGTTC
CCGGAGAATATCGTCCGGCTGAACGAGCTGCTGGCCACGCCGATCTTCAA
CGAGCGCAACTTCGAAGAAGTGCACCAGGACCTCAACATCCCGGTCCTGC
CGCCTCTCCTGGTTAAAAACGAGTTGGAGGATCGTGACAGTCTGCCCACC
AAGCGCCAGCGCGTGGATGTCATCGTCTCTGGGCAGCCTGTCATGGGTCT
GCCCGCCGGTACAGTGCCGTGCAACAAGCCGCTCTGCGAGATGATCAAGG
TCGTCAAGCCTATCATCAGGAAGCTTGTGGAGGATTCCAATCTACTTAAG
ATGTGGATCTCCTTTATGATACCCAAGATCGAGGATGGCAACAACTTTGG
CGTCTCCATTCAAGAGGACACGCTTGCCGAAATTCAAACTGTGGAATCCG
AGGCGGCCGCCTTCTTTGACCAGATATCGCGCTATTTCTTGTCGCGCGCC
AAGGTGGTGTCCAAGGTGGCCAAGTATCCGCACATCGATGATTATCGGCG
CGCAGTCGTCGAACTTGACGAGAAGGAGTACCTCAGCTTGTGGCTGGTCG
TTTGTGAGGTCCGCAATCGCTACTCCTCGCTGCACGACATTGTTATTAAG
AACCTCGAGAAGCTAAAGAAGCCGCGCTCCTCAAATACCGAAAGCCTGTA
TGCAAGCTTTCTAGACCAT

BO09284.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
REG-RB 738 CG1591-PB 1..735 17..751 3675 100 Plus
REG-RA 738 CG1591-PA 1..735 17..751 3675 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:24:37
Subject Length Description Subject Range Query Range Score Percent Strand
REG-RB 1830 CG1591-RB 204..942 13..751 3680 99.9 Plus
REG-RA 1370 CG1591-RA 177..915 13..751 3680 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:24:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13212585..13212958 13..386 1855 99.7 Plus
X 23542271 X 13213156..13213520 387..751 1825 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:24:34 has no hits.

BO09284.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:20 Download gff for BO09284.complete
Subject Subject Range Query Range Percent Splice Strand
REG-RA 1..738 17..752 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:23 Download gff for BO09284.complete
Subject Subject Range Query Range Percent Splice Strand
REG-RA 182..926 13..758 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:02 Download gff for BO09284.complete
Subject Subject Range Query Range Percent Splice Strand
REG-RA 181..915 17..753 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:20 Download gff for BO09284.complete
Subject Subject Range Query Range Percent Splice Strand
REG-RA 182..926 13..758 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:19 Download gff for BO09284.complete
Subject Subject Range Query Range Percent Splice Strand
REG-RA 181..915 17..753 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:19 Download gff for BO09284.complete
Subject Subject Range Query Range Percent Splice Strand
X 13212589..13212958 17..386 100 -> Plus
X 13213156..13213520 387..753 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:02 Download gff for BO09284.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13106622..13106991 17..386 100 -> Plus
arm_X 13107189..13107553 387..753 99   Plus

BO09284.pep Sequence

Translation from 16 to 769

> BO09284.pep
MPNDTVVKVQEYKDSLILKAELLITKGFPENIVRLNELLATPIFNERNFE
EVHQDLNIPVLPPLLVKNELEDRDSLPTKRQRVDVIVSGQPVMGLPAGTV
PCNKPLCEMIKVVKPIIRKLVEDSNLLKMWISFMIPKIEDGNNFGVSIQE
DTLAEIQTVESEAAAFFDQISRYFLSRAKVVSKVAKYPHIDDYRRAVVEL
DEKEYLSLWLVVCEVRNRYSSLHDIVIKNLEKLKKPRSSNTESLYASFLD
H

BO09284.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
REG-PB 245 CG1591-PB 1..245 1..245 1246 100 Plus
REG-PA 245 CG1591-PA 1..245 1..245 1246 100 Plus