Clone Sequence Records
BO09284.3prime Sequence
767 bp (766 high quality bases) assembled on 2006-01-18
> BO09284.3prime
ATGGTCTAGAAAGCTTGCATACAGGCTTTCGGTATTTGAGGAGCGCGGCT
TCTTTAGCTTCTCGAGGTTCTTAATAACAATGTCGTGCAGCGAGGAGTAG
CGATTGCGGACCTCACAAACGACCAGCCACAAGCTGAGGTACTCCTTCTC
GTCAAGTTCGACGACTGCGCGCCGATAATCATCGATGTGCGGATACTTGG
CCACCTTGGACACCACCTTGGCGCGCGACAAGAAATAGCGCGATATCTGG
TCAAAGAAGGCGGCCGCCTCGGATTCCACAGTTTGAATTTCGGCAAGCGT
GTCCTCTTGAATGGAGACGCCAAAGTTGTTGCCATCCTCGATCTTGGGTA
TCATAAAGGAGATCCACATCTTAAGTAGATTGGAATCCTCCACAAGCTTC
CTGATGATAGGCTTGACGACCTTGATCATCTCGCAGAGCGGCTTGTTGCA
CGGCACTGTACCGGCGGGCAGACCCATGACAGGCTGCCCAGAGACGATGA
CATCCACGCGCTGGCGCTTGGTGGGCAGACTGTCACGATCCTCCAACTCG
TTTTTAACCAGGAGAGGCGGCAGGACCGGGATGTTGAGGTCCTGGTGCAC
TTCTTCGAAGTTGCGCTCGTTGAAGATCGGCGTGGCCAGCAGCTCGTTCA
GCCGGACGATATTCTCCGGGAACCCCTTGGTGATTAGCAGCTCTGCCTTG
AGGATCAACGAGTCCTTGTACTCCTGCACCTTTACCACAGTGTCGTTAGG
CATGTCGACTGATAACT
BO09284.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1591-PA | 738 | REG-RA | 1..735 | 753..19 | 3675 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:04:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
REG-RB | 1830 | CG1591-RB | 204..942 | 757..19 | 3680 | 99.9 | Minus |
REG-RA | 1370 | CG1591-RA | 177..915 | 757..19 | 3680 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:04:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13212585..13212958 | 757..384 | 1855 | 99.7 | Minus |
X | 23542271 | X | 13213156..13213520 | 383..19 | 1825 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:04:17 has no hits.
BO09284.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:44 Download gff for
BO09284.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
REG-PA | 1..738 | 18..753 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:09:06 Download gff for
BO09284.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1591-PA | 1..738 | 18..753 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:56:08 Download gff for
BO09284.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
REG-RA | 177..921 | 12..757 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:25:18 Download gff for
BO09284.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
REG-RA | 177..921 | 12..757 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:25:18 Download gff for
BO09284.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13212585..13212958 | 384..757 | 99 | -> | Minus |
X | 13213156..13213526 | 12..383 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:56:08 Download gff for
BO09284.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13106618..13106991 | 384..757 | 99 | -> | Minus |
arm_X | 13107189..13107559 | 12..383 | 99 | | Minus |
BO09284.5prime Sequence
767 bp (766 high quality bases) assembled on 2006-01-18
> BO09284.5prime
GAAGTTATCAGTCGACATGCCTAACGACACTGTGGTAAAGGTGCAGGAGT
ACAAGGACTCGTTGATCCTCAAGGCAGAGCTGCTAATCACCAAGGGGTTC
CCGGAGAATATCGTCCGGCTGAACGAGCTGCTGGCCACGCCGATCTTCAA
CGAGCGCAACTTCGAAGAAGTGCACCAGGACCTCAACATCCCGGTCCTGC
CGCCTCTCCTGGTTAAAAACGAGTTGGAGGATCGTGACAGTCTGCCCACC
AAGCGCCAGCGCGTGGATGTCATCGTCTCTGGGCAGCCTGTCATGGGTCT
GCCCGCCGGTACAGTGCCGTGCAACAAGCCGCTCTGCGAGATGATCAAGG
TCGTCAAGCCTATCATCAGGAAGCTTGTGGAGGATTCCAATCTACTTAAG
ATGTGGATCTCCTTTATGATACCCAAGATCGAGGATGGCAACAACTTTGG
CGTCTCCATTCAAGAGGACACGCTTGCCGAAATTCAAACTGTGGAATCCG
AGGCGGCCGCCTTCTTTGACCAGATATCGCGCTATTTCTTGTCGCGCGCC
AAGGTGGTGTCCAAGGTGGCCAAGTATCCGCACATCGATGATTATCGGCG
CGCAGTCGTCGAACTTGACGAGAAGGAGTACCTCAGCTTGTGGCTGGTCG
TTTGTGAGGTCCGCAATCGCTACTCCTCGCTGCACGACATTGTTATTAAG
AACCTCGAGAAGCTAAAGAAGCCGCGCTCCTCAAATACCGAAAGCCTGTA
TGCAAGCTTTCTAGACC
BO09284.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1591-PA | 738 | REG-RA | 1..735 | 17..751 | 3675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:48:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
REG-RB | 1830 | CG1591-RB | 204..942 | 13..751 | 3680 | 99.9 | Plus |
REG-RA | 1370 | CG1591-RA | 177..915 | 13..751 | 3680 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:48:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13212585..13212958 | 13..386 | 1855 | 99.7 | Plus |
X | 23542271 | X | 13213156..13213520 | 387..751 | 1825 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 09:48:48 has no hits.
BO09284.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:44 Download gff for
BO09284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
REG-PA | 1..738 | 17..752 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:09:07 Download gff for
BO09284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1591-PA | 1..738 | 17..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:23:27 Download gff for
BO09284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
REG-RA | 177..921 | 13..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:52:51 Download gff for
BO09284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
REG-RA | 177..921 | 13..758 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:52:51 Download gff for
BO09284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13212585..13212958 | 13..386 | 99 | -> | Plus |
X | 13213156..13213526 | 387..758 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:23:27 Download gff for
BO09284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13106618..13106991 | 13..386 | 99 | -> | Plus |
arm_X | 13107189..13107559 | 387..758 | 99 | | Plus |
BO09284.complete Sequence
769 bp (769 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ638667
> BO09284.complete
GAAGTTATCAGTCGACATGCCTAACGACACTGTGGTAAAGGTGCAGGAGT
ACAAGGACTCGTTGATCCTCAAGGCAGAGCTGCTAATCACCAAGGGGTTC
CCGGAGAATATCGTCCGGCTGAACGAGCTGCTGGCCACGCCGATCTTCAA
CGAGCGCAACTTCGAAGAAGTGCACCAGGACCTCAACATCCCGGTCCTGC
CGCCTCTCCTGGTTAAAAACGAGTTGGAGGATCGTGACAGTCTGCCCACC
AAGCGCCAGCGCGTGGATGTCATCGTCTCTGGGCAGCCTGTCATGGGTCT
GCCCGCCGGTACAGTGCCGTGCAACAAGCCGCTCTGCGAGATGATCAAGG
TCGTCAAGCCTATCATCAGGAAGCTTGTGGAGGATTCCAATCTACTTAAG
ATGTGGATCTCCTTTATGATACCCAAGATCGAGGATGGCAACAACTTTGG
CGTCTCCATTCAAGAGGACACGCTTGCCGAAATTCAAACTGTGGAATCCG
AGGCGGCCGCCTTCTTTGACCAGATATCGCGCTATTTCTTGTCGCGCGCC
AAGGTGGTGTCCAAGGTGGCCAAGTATCCGCACATCGATGATTATCGGCG
CGCAGTCGTCGAACTTGACGAGAAGGAGTACCTCAGCTTGTGGCTGGTCG
TTTGTGAGGTCCGCAATCGCTACTCCTCGCTGCACGACATTGTTATTAAG
AACCTCGAGAAGCTAAAGAAGCCGCGCTCCTCAAATACCGAAAGCCTGTA
TGCAAGCTTTCTAGACCAT
BO09284.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:24:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
REG-RB | 738 | CG1591-PB | 1..735 | 17..751 | 3675 | 100 | Plus |
REG-RA | 738 | CG1591-PA | 1..735 | 17..751 | 3675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:24:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
REG-RB | 1830 | CG1591-RB | 204..942 | 13..751 | 3680 | 99.9 | Plus |
REG-RA | 1370 | CG1591-RA | 177..915 | 13..751 | 3680 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:24:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13212585..13212958 | 13..386 | 1855 | 99.7 | Plus |
X | 23542271 | X | 13213156..13213520 | 387..751 | 1825 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:24:34 has no hits.
BO09284.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:20 Download gff for
BO09284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
REG-RA | 1..738 | 17..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:23 Download gff for
BO09284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
REG-RA | 182..926 | 13..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:02 Download gff for
BO09284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
REG-RA | 181..915 | 17..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:20 Download gff for
BO09284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
REG-RA | 182..926 | 13..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:19 Download gff for
BO09284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
REG-RA | 181..915 | 17..753 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:19 Download gff for
BO09284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13212589..13212958 | 17..386 | 100 | -> | Plus |
X | 13213156..13213520 | 387..753 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:02 Download gff for
BO09284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13106622..13106991 | 17..386 | 100 | -> | Plus |
arm_X | 13107189..13107553 | 387..753 | 99 | | Plus |
BO09284.pep Sequence
Translation from 16 to 769
> BO09284.pep
MPNDTVVKVQEYKDSLILKAELLITKGFPENIVRLNELLATPIFNERNFE
EVHQDLNIPVLPPLLVKNELEDRDSLPTKRQRVDVIVSGQPVMGLPAGTV
PCNKPLCEMIKVVKPIIRKLVEDSNLLKMWISFMIPKIEDGNNFGVSIQE
DTLAEIQTVESEAAAFFDQISRYFLSRAKVVSKVAKYPHIDDYRRAVVEL
DEKEYLSLWLVVCEVRNRYSSLHDIVIKNLEKLKKPRSSNTESLYASFLD
H
BO09284.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
REG-PB | 245 | CG1591-PB | 1..245 | 1..245 | 1246 | 100 | Plus |
REG-PA | 245 | CG1591-PA | 1..245 | 1..245 | 1246 | 100 | Plus |