Clone BO09286 Report

Search the DGRC for BO09286

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:92
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCct1-RA
Protein status:BO09286.pep: validated full length
Sequenced Size:1612

Clone Sequence Records

BO09286.3prime Sequence

937 bp (832 high quality bases) assembled on 2006-01-18

> BO09286.3prime
ATGGTCTAGAAAGCTTGCATTGCTTCGACGCTCGTACTCCGCATCCGCAT
CCGCATCCTCGTCCCCATCCGCTTCCAAGTCGGGTGATTGGCTCTGCAGA
CTCTGGTAACTGCGGCGGGCCAGCGAGGAGCGCTTCTGCTTCGGCCTCTG
TTTGCCGTTCAGCGATCCACTGCTGCCGCTGCCGCTGCCCCCGCTCAACT
TCTCGGCCATCTCCAAGTACTCGTCAATAGTTTCGCTGTAGTCCTCGCCG
CCCTCCGTGTCATCACCGTTCACTGATCCCGACGGGCTGCCCGGCGGACT
GAGTGCCTGCAGCAGCTTGCCCTTCGACTCGTTCCACAAATGATTCAGGT
TCTCACGTCCGAACAGCAGCAGGAAGGTGTCGATGAATTCGCGCGACTTC
TCCTCCCACTTGGTGATGATGTCCACCTTCACCTTGCTCAGCTCGCGCTT
GCCGCGCGACTTCAGCTCGTCCATCTTGTTCTGCAGCCGGAACTTCTTCT
CGGACAGGAACGACACATTGAGTTCCTTGGCCGAATAGCCTCTGGCCAGA
TTACGACGCACATACAGATCGTAATCCTTGACGATCCGGGCTACGATGTC
CGAGGTGGACACACCCTCAGTGCGCTCCGTGGCCACAAACATGCCGCGCG
CCTTGAGAGGAGCATAGATGTCGTCCATGCCATCGGTTACATACGGAATG
TCGTCGTGGGCCACAAAGTCGATTTTGTTGTCGGCGATGAATTCATCGGA
CAGAGTCCATGGCGCATTCTGGACGATCTCGTCCACATAGCGGCAGTGAC
GCACTCCCTCGTATCGCTCGAAGCCGTTCATCACGGTGCGTCCCTTCATG
CGGTGGGTGAGCTCGTCGTTGCACACGCCCACAATTTAGTACACGTTGGG
AAAGATGTTCTTGGCCTGCATTAGTTGGCGGGCGTGG

BO09286.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG1049-PA 1581 Cct1-RA 660..1578 937..19 4570 99.8 Minus
CG1049-PD 1581 Cct1-RD 660..1578 937..19 4570 99.8 Minus
CG1049-PB 1581 Cct1-RB 660..1578 937..19 4570 99.8 Minus
CG1049-PC 1581 Cct1-RC 660..1578 937..19 4570 99.8 Minus
CG18330-PA 1146 Cct2-RA 712..857 504..359 380 90.4 Minus
CG18330-PA 1146 Cct2-RA 574..659 642..557 180 88.3 Minus
CG18330-PA 1146 Cct2-RA 367..443 849..773 135 87 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:11:34
Subject Length Description Subject Range Query Range Score Percent Strand
Cct1-RF 2754 CG1049-RF 955..1873 937..19 4580 99.9 Minus
Cct1-RE 2564 CG1049-RE 1033..1951 937..19 4580 99.9 Minus
Cct1-RC 2302 CG1049-RC 771..1689 937..19 4580 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1551863..1552623 779..19 3805 100 Minus
3L 28110227 3L 1554459..1554975 779..263 1085 80.7 Minus
3L 28110227 3L 1551642..1551801 937..778 785 99.4 Minus
3L 28110227 3L 1554242..1554401 937..778 380 82.5 Minus
Blast to na_te.dros performed on 2015-02-11 23:11:29 has no hits.

BO09286.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:47 Download gff for BO09286.3prime
Subject Subject Range Query Range Percent Splice Strand
Cct1-PB 660..1581 16..937 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:09:11 Download gff for BO09286.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1049-PD 660..1581 16..937 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:32:47 Download gff for BO09286.3prime
Subject Subject Range Query Range Percent Splice Strand
Cct1-RB 876..1801 12..937 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:35:42 Download gff for BO09286.3prime
Subject Subject Range Query Range Percent Splice Strand
Cct1-RC 771..1696 12..937 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:35:42 Download gff for BO09286.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1551642..1551801 778..937 99 -> Minus
3L 1551865..1552630 12..777 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:32:47 Download gff for BO09286.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1551642..1551801 778..937 99 -> Minus
arm_3L 1551865..1552630 12..777 99   Minus

BO09286.5prime Sequence

906 bp (765 high quality bases) assembled on 2006-01-18

> BO09286.5prime
GAAGTTATCAGTCGACATGGCCACCTCATCGATACTCGCCAAAAGCACAA
TTAATAGCACATCGCCACCGGCCACGCCCAGCAGCAGCGCGTCCCCCGGC
TCCACACTGACCACCCGGAAGCGGACCTACGAGATAGCCATTGCCATGCC
CTCGTCCACCGCCTCCAGCAGCGCCACAAAGGTATCGGAAGTTCAGGATC
AGCGCACAAACAGCCCCGGCAAGTCCAAGAGCAGGCCCGGCCAGCTGGAG
AGTGTCTTGGTGGTCGGCGAGGGAGCCAGCGAGCCCACCACCTCGGCCAC
CACACTGCGGGACAGCACACGCACCATCTCACAAAGCGACGCCGACGATG
GCGGCGAAGCGGCAGCCGCCGAGGACCTGCTGCCCCCACAGTCGGATTAC
CTCAACGGCGTCAAGCGGAAGTACGTCCCGCAGCAGCAGGCGTCGCCGAA
TCACCGGGTGGTGCCCGCATCCACCTCGCAGCAATTCTTCAGCGGGGCCT
CCGATTTTGCGACAATTTGCAAGCCGGCGCCCTACTCTCACGACGAGGAG
GCCATGCTGGAGCGGGATAGATGTGACTACACTCAAAGGATCACCTACCA
GATGGCCCGCTCCGGACAGACGACCCGCAGGGTGAGGGTCTACGCCGATG
GCATCTACGATCTTTTCCACCAGGGCCACGCCCGCCAACTAATGCAGGCC
AAGAACATCTTTCCCAACGTGTACTTAATTGTGGGCGTGTGCAACGACGA
GCTCACCCACCGCATGAAAGGACGCACCGTGATGAACGGCTTCGAGCGAT
ACGAGGGAGTGCGTCACTGCCGCTATGTGGACGAGATCGTCCAGAATGCG
CCATGGACTCTGTCCGATGAATTCATCGCCAACAACAAAATCGACTTTGT
GGCCCA

BO09286.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG1049-PA 1581 Cct1-RA 1..890 17..906 4400 99.7 Plus
CG1049-PD 1581 Cct1-RD 1..890 17..906 4400 99.7 Plus
CG1049-PB 1581 Cct1-RB 1..890 17..906 4400 99.7 Plus
CG1049-PC 1581 Cct1-RC 1..890 17..906 4400 99.7 Plus
CG18330-PA 1146 Cct2-RA 221..308 618..705 190 88.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
Cct1-RF 2754 CG1049-RF 296..1185 17..906 4420 99.8 Plus
Cct1-RE 2564 CG1049-RE 374..1263 17..906 4420 99.8 Plus
Cct1-RC 2302 CG1049-RC 112..1001 17..906 4420 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1550794..1551288 17..511 2475 100 Plus
3L 28110227 3L 1551477..1551801 511..835 1610 99.7 Plus
3L 28110227 3L 1554081..1554401 515..835 705 81.3 Plus
3L 28110227 3L 1551863..1551935 834..906 350 98.6 Plus
Blast to na_te.dros performed on 2015-02-12 05:08:27 has no hits.

BO09286.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:48 Download gff for BO09286.5prime
Subject Subject Range Query Range Percent Splice Strand
Cct1-PB 1..889 17..905 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:09:12 Download gff for BO09286.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1049-PC 1..889 17..905 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:54:30 Download gff for BO09286.5prime
Subject Subject Range Query Range Percent Splice Strand
Cct1-RB 215..1105 13..905 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:22:52 Download gff for BO09286.5prime
Subject Subject Range Query Range Percent Splice Strand
Cct1-RC 110..1000 13..905 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:22:52 Download gff for BO09286.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1551478..1551801 512..835 99 -> Plus
3L 1551865..1551934 836..905 98   Plus
3L 1550792..1551288 13..511 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:54:30 Download gff for BO09286.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1550792..1551288 13..511 99 -> Plus
arm_3L 1551478..1551801 512..835 99 -> Plus
arm_3L 1551865..1551934 836..905 98   Plus

BO09286.complete Sequence

1612 bp (1612 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631462

> BO09286.complete
GAAGTTATCAGTCGACATGGCCACCTCATCGATACTCGCCAAAAGCACAA
TTAATAGCACATCGCCACCGGCCACGCCCAGCAGCAGCGCGTCCCCCGGC
TCCACACTGACCACCCGGAAGCGGACCTACGAGATAGCCATTGCCATGCC
CTCGTCCACCGCCTCCAGCAGCGCCACAAAGGTATCGGAAGTTCAGGATC
AGCGCACAAACAGCCCCGGCAAGTCCAAGAGCAGGCCCGGCCAGCTGGAG
AGTGTCTTGGTGGTCGGCGAGGGAGCCAGCGAGCCCACCACCTCGGCCAC
CACACTGCGGGACAGCACACGCACCATCTCACAAAGCGACGCCGACGATG
GCGGCGAAGCGGCAGCCGCCGAGGACCTGCTGCCCCCACAGTCGGATTAC
CTCAACGGCGTCAAGCGGAAGTACGTCCCGCAGCAGCAGGCGTCGCCGAA
TCACCGGGTGGTGCCCGCATCCACCTCGCAGCAATTCTTCAGCGGGGCCT
CCGATTTTGCGACAATTTGCAAGCCGGCGCCCTACTCTCACGACGAGGAG
GCCATGCTGGAGCGGGATAGATGTGACTACACTCAAAGGATCACCTACCA
GATGGCCCGCTCCGGACAGACGACCCGCAGGGTGAGGGTCTACGCCGATG
GCATCTACGATCTTTTCCACCAGGGCCACGCCCGCCAACTAATGCAGGCC
AAGAACATCTTTCCCAACGTGTACTTAATTGTGGGCGTGTGCAACGACGA
GCTCACCCACCGCATGAAGGGACGCACCGTGATGAACGGCTTCGAGCGAT
ACGAGGGAGTGCGTCACTGCCGCTATGTGGACGAGATCGTCCAGAATGCG
CCATGGACTCTGTCCGATGAATTCATCGCCGACAACAAAATCGACTTTGT
GGCCCACGACGACATTCCGTATGTAACCGATGGCATGGACGACATCTATG
CTCCTCTCAAGGCGCGCGGCATGTTTGTGGCCACGGAGCGCACTGAGGGT
GTGTCCACCTCGGACATCGTAGCCCGGATCGTCAAGGATTACGATCTGTA
TGTGCGTCGTAATCTGGCCAGAGGCTATTCGGCCAAGGAACTCAATGTGT
CGTTCCTGTCCGAGAAGAAGTTCCGGCTGCAGAACAAGATGGACGAGCTG
AAGTCGCGCGGCAAGCGCGAGCTGAGCAAGGTGAAGGTGGACATCATCAC
CAAGTGGGAGGAGAAGTCGCGCGAATTCATCGACACCTTCCTGCTGCTGT
TCGGACGTGAGAACCTGAATCATTTGTGGAACGAGTCGAAGGGCAAGCTG
CTGCAGGCACTCAGTCCGCCGGGCAGCCCGTCGGGATCAGTGAACGGTGA
TGACACGGAGGGCGGCGAGGACTACAGCGAAACTATTGACGAGTACTTGG
AGATGGCCGAGAAGTTGAGCGGGGGCAGCGGCAGCGGCAGCAGTGGATCG
CTGAACGGCAAACAGAGGCCGAAGCAGAAGCGCTCCTCGCTGGCCCGCCG
CAGTTACCAGAGTCTGCAGAGCCAATCACCCGACTTGGAAGCGGATGGGG
ACGAGGATGCGGATGCGGATGCGGAGTACGAGCGTCGAAGCAATGCAAGC
TTTCTAGACCAT

BO09286.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
Cct1-RF 1581 CG1049-PF 1..1578 17..1594 7890 100 Plus
Cct1-RE 1581 CG1049-PE 1..1578 17..1594 7890 100 Plus
Cct1-RC 1581 CG1049-PC 1..1578 17..1594 7890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
Cct1-RF 2754 CG1049-RF 296..1873 17..1594 7890 100 Plus
Cct1-RE 2564 CG1049-RE 374..1951 17..1594 7890 100 Plus
Cct1-RC 2302 CG1049-RC 112..1689 17..1594 7890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1551863..1552623 834..1594 3805 100 Plus
3L 28110227 3L 1550794..1551288 17..511 2475 100 Plus
3L 28110227 3L 1551477..1551801 511..835 1625 100 Plus
3L 28110227 3L 1554459..1554975 834..1350 1085 80.7 Plus
3L 28110227 3L 1554081..1554401 515..835 720 81.6 Plus
Blast to na_te.dros performed on 2014-11-27 23:51:20 has no hits.

BO09286.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:41 Download gff for BO09286.complete
Subject Subject Range Query Range Percent Splice Strand
Cct1-RB 1..1581 17..1597 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:16 Download gff for BO09286.complete
Subject Subject Range Query Range Percent Splice Strand
Cct1-RB 215..1801 13..1601 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:39:54 Download gff for BO09286.complete
Subject Subject Range Query Range Percent Splice Strand
Cct1-RB 217..1794 17..1596 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:41 Download gff for BO09286.complete
Subject Subject Range Query Range Percent Splice Strand
Cct1-RB 215..1801 13..1601 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:43 Download gff for BO09286.complete
Subject Subject Range Query Range Percent Splice Strand
Cct1-RC 112..1689 17..1596 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:43 Download gff for BO09286.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1550794..1551288 17..511 100 -> Plus
3L 1551478..1551801 512..835 100 -> Plus
3L 1551865..1552623 836..1596 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:39:54 Download gff for BO09286.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1550794..1551288 17..511 100 -> Plus
arm_3L 1551478..1551801 512..835 100 -> Plus
arm_3L 1551865..1552623 836..1596 99   Plus

BO09286.pep Sequence

Translation from 16 to 1612

> BO09286.pep
MATSSILAKSTINSTSPPATPSSSASPGSTLTTRKRTYEIAIAMPSSTAS
SSATKVSEVQDQRTNSPGKSKSRPGQLESVLVVGEGASEPTTSATTLRDS
TRTISQSDADDGGEAAAAEDLLPPQSDYLNGVKRKYVPQQQASPNHRVVP
ASTSQQFFSGASDFATICKPAPYSHDEEAMLERDRCDYTQRITYQMARSG
QTTRRVRVYADGIYDLFHQGHARQLMQAKNIFPNVYLIVGVCNDELTHRM
KGRTVMNGFERYEGVRHCRYVDEIVQNAPWTLSDEFIADNKIDFVAHDDI
PYVTDGMDDIYAPLKARGMFVATERTEGVSTSDIVARIVKDYDLYVRRNL
ARGYSAKELNVSFLSEKKFRLQNKMDELKSRGKRELSKVKVDIITKWEEK
SREFIDTFLLLFGRENLNHLWNESKGKLLQALSPPGSPSGSVNGDDTEGG
EDYSETIDEYLEMAEKLSGGSGSGSSGSLNGKQRPKQKRSSLARRSYQSL
QSQSPDLEADGDEDADADAEYERRSNASFLDH

BO09286.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
Cct1-PF 526 CG1049-PF 1..526 1..526 2695 100 Plus
Cct1-PE 526 CG1049-PE 1..526 1..526 2695 100 Plus
Cct1-PC 526 CG1049-PC 1..526 1..526 2695 100 Plus
Cct1-PB 526 CG1049-PB 1..526 1..526 2695 100 Plus
Cct1-PD 526 CG1049-PD 1..526 1..526 2695 100 Plus