Clone Sequence Records
BO09291.3prime Sequence
946 bp (873 high quality bases) assembled on 2006-01-18
> BO09291.3prime
ATGGTCTAGAAAGCTTGCTAGTCCGGGCATTACGTAGGCGATGTTGTCGA
GCGTGTCGGCCAGATTTTTGCTCAACTGCACATTGTTCTCCATGCCGGGT
ATTTGCGTGGTCATGCAGAGCAGCGGTCCCATGGCGCAGAGCAGGCTGTC
GAGGAGCACGGACAAGCTGCCCGATAGCGCCACGTATCCATTGTGCTTCT
TCAGTCGCTCGCCAATCACAGTCAGGCTCTCGCCGAGCAGCTTCAGATGT
GCGGCCGCATCGATCACTTCGATGCTGGTCTTTTGCACCTCCTCCTGCTT
CAGCTGACCCCCAGTCCGGCCGCTGACGTCCGCATCCGTGTGCACTTGCG
CTTGTTTCGTCGCGCTCTTCGAGACCTGCGACCTGGCACTTCGTGTGCTG
ATGCTGCGCCGCTGTGTGTTGGTGCCAGTCGCTGCTGCTGCCGCCGCTGC
GGCAGCCGCTTCTATTGAGGATTGCTGCCGATCGGCGGCCAGTTTTCGAG
TGCGACTTGTTGTCGCACGGTTCTGAAAGATCGTCTCGTGCTGCGTGGCA
TCTGCCAGAGCCGTGCTGCCGTTGCTCGCCGGCTGGGTTGCACCGTTTGC
AGCGGTTTTGTCGCGAGTTTTGGCCCTGGACGCCTCGATTTTGGCCTTGC
GCCGCCAGGTGTTCTTGTCCCGATTGGAAACGTTCGCCCACAGCTCGCTG
AGGCGTCTGGTCGCGCTGGTGAAGTCTAGATCCTGGAGATCCTTCTGTCG
CGCCTCCTTGGCCCACAGACTGTAGGCGGTGTAGCGCTGCTTGCCCTTGT
CCTTGCGCTGCACCTTGGCACTCACCACCTTGCCGTCCTTGAGCACCTGC
CGCTTGTTGGACTTCTCGCGCATGTAAAGACTCTGACNGACGGATGACTC
TTGGCTGGTGGCCTCCGCCTGGACACCATCGACGATATCCTGCACC
BO09291.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4617-PA | 1257 | CG4617-RA | 327..1254 | 946..19 | 4621 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 06:49:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4617-RC | 1819 | CG4617-RC | 424..1351 | 946..19 | 4629 | 99.9 | Minus |
| CG4617-RA | 1694 | CG4617-RA | 424..1351 | 946..19 | 4629 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 06:49:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7103023..7103731 | 19..727 | 3545 | 100 | Plus |
| X | 23542271 | X | 7103792..7104012 | 726..946 | 1094 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-01 06:49:34 has no hits.
BO09291.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:51 Download gff for
BO09291.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4617-PA | 327..1257 | 16..946 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:09:16 Download gff for
BO09291.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4617-PA | 327..1257 | 16..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:07:47 Download gff for
BO09291.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4617-RA | 424..1356 | 14..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:38:23 Download gff for
BO09291.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4617-RA | 424..1356 | 14..946 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:38:23 Download gff for
BO09291.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7103018..7103729 | 14..725 | 99 | <- | Plus |
| X | 7103792..7104012 | 726..946 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:07:47 Download gff for
BO09291.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6997051..6997762 | 14..725 | 99 | <- | Plus |
| arm_X | 6997825..6998045 | 726..946 | 99 | | Plus |
BO09291.5prime Sequence
908 bp (765 high quality bases) assembled on 2006-01-18
> BO09291.5prime
GAAGTTATCAGTCGACATGGAGTCCCCAACCTCGCACCTGGTGGCCAAGG
ATTTCCAGGTGACGGGTGTTTCGCGCAGCGGACGCGTACGCAAAAAATCG
TCGAAATTGTTGGATTTTGAATCTCCGGATGAGATCGAGAAGCGCACAAG
GCGTCACAGTGGCGCCAGACAGCCAGCCAGATATTCGGGCCGCGGCAGGC
CATCGAATGCGCTGCGTGATCTGGATCTTGACCAGGAGATGCTCGTGGAT
GATGGCATTATCTCGGATAGCGAGGAATTCCATCCGGATACAACGGCAAC
GGTCGTGGCCATTCTGAATTCCGACGATGAACTGGACAATCTGGTGCAGG
ATATCGTCGATGGTGTCCAGGCGGAGGCCACCAGCCAAGAGTCATCCGTC
CGTCAGAGTCTTTACATGCGCGAGAAGTCCAACAAGCGGCAGGTGCTCAA
GGACGGCAAGGTGGTGAGTGCCAAGGTGCAGCGCAAGGACAAGGGCAAGC
AGCGCTACACCGCCTACAGTCTGTGGGCCAAGGAGGCGCGACAGAAGGAT
CTCCAGGATCTAGACTTCACCAGCGCGACCAGACGCCTCAGCGAGCTGTG
GGCGAACGTTTCCAATCGGGACAAGAACACCTGGCGGCGCAAGGCCAAAA
TCGAGGCGTCCAGGGCCAAAACTCGCGACAAAACCGCTGCAAACGGTGCA
ACCCAGCCGGCGAGCAACGGCAGCACGGCTCTGGCAGATGCCACGCAGCA
CGAGACGATCTTTCAGAACCGTGCGACAACAAGTCGCACTCGAAAACTGG
CCGCCGATCGGCAGCAATCCTCAATAGAAGCGGCTGCCGCAGCGGCGGCA
GCAGCAGCGACTGGCACCACACACAGCGGCGCAGCATCAGCACACGAAGT
GCCAGGTC
BO09291.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4617-PA | 1257 | CG4617-RA | 1..853 | 17..869 | 4265 | 100 | Plus |
| CG4617-PA | 1257 | CG4617-RA | 854..893 | 869..908 | 200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:30:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4617-RC | 1819 | CG4617-RC | 96..990 | 15..908 | 4450 | 99.9 | Plus |
| CG4617-RA | 1694 | CG4617-RA | 96..990 | 15..908 | 4450 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:30:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7103792..7104305 | 563..50 | 2570 | 100 | Minus |
| X | 23542271 | X | 7103384..7103731 | 908..562 | 1690 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:30:47 has no hits.
BO09291.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:52 Download gff for
BO09291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4617-PA | 1..893 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:09:17 Download gff for
BO09291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4617-PA | 1..893 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:34:01 Download gff for
BO09291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4617-RA | 93..990 | 9..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:55:18 Download gff for
BO09291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4617-RA | 93..990 | 9..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:55:18 Download gff for
BO09291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7103384..7103729 | 564..908 | 99 | <- | Minus |
| X | 7103792..7104304 | 51..563 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:34:01 Download gff for
BO09291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6997417..6997762 | 564..908 | 99 | <- | Minus |
| arm_X | 6997825..6998337 | 51..563 | 100 | <- | Minus |
BO09291.complete Sequence
1288 bp (1288 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631463
> BO09291.complete
GAAGTTATCAGTCGACATGGAGTCCCCAACCTCGCACCTGGTGGCCAAGG
ATTTCCAGGTGACGGGTGTTTCGCGCAGCGGACGCGTACGCAAAAAATCG
TCGAAATTGTTGGATTTTGAATCTCCGGATGAGATCGAGAAGCGCACAAG
GCGTCACAGTGGCGCCAGACAGCCAGCCAGATATTCGGGCCGCGGCAGGC
CATCGAATGCGCTGCGTGATCTGGATCTTGACCAGGAGATGCTCGTGGAT
GATGGCATTATCTCGGATAGCGAGGAATTCCATCCGGATACAACGGCAAC
GGTCGTGGCCATTCTGAATTCCGACGATGAACTGGACAATCTGGTGCAGG
ATATCGTCGATGGTGTCCAGGCGGAGGCCACCAGCCAAGAGTCATCCGTC
CGTCAGAGTCTTTACATGCGCGAGAAGTCCAACAAGCGGCAGGTGCTCAA
GGACGGCAAGGTGGTGAGTGCCAAGGTGCAGCGCAAGGACAAGGGCAAGC
AGCGCTACACCGCCTACAGTCTGTGGGCCAAGGAGGCGCGACAGAAGGAT
CTCCAGGATCTAGACTTCACCAGCGCGACCAGACGCCTCAGCGAGCTGTG
GGCGAACGTTTCCAATCGGGACAAGAACACCTGGCGGCGCAAGGCCAAAA
TCGAGGCGTCCAGGGCCAAAACTCGCGACAAAACCGCTGCAAACGGTGCA
ACCCAGCCGGCGAGCAACGGCAGCACGGCTCTGGCAGATGCCACGCAGCA
CGAGACGATCTTTCAGAACCGTGCGACAACAAGTCGCACTCGAAAACTGG
CCGCCGATCGGCAGCAATCCTCAATAGAAGCGGCTGCCGCAGCGGCGGCA
GCAGCAGCGACTGGCACCAACACACAGCGGCGCAGCATCAGCACACGAAG
TGCCAGGTCGCAGGTCTCGAAGAGCGCGACGAAACAAGCGCAAGTGCACA
CGGATGCGGACGTCAGCGGCCGGACTGGGGGTCAGCTGAAGCAGGAGGAG
GTGCAAAAGACCAGCATCGAAGTGATCGATGCGGCCGCACATCTGAAGCT
GCTCGGCGAGAGCCTGACTGTGATTGGCGAGCGACTGAAGAAGCACAATG
GATACGTGGCGCTATCGGGCAGCTTGTCCGTGCTCCTCGACAGCCTGCTC
TGCGCCATGGGACCGCTGCTCTGCATGACCACGCAAATACCCGGCATGGA
GAACAATGTGCAGTTGAGCAAAAATCTGGCCGACACGCTCGACAACATCG
CCTACGTAATGCCCGGACTAGCAAGCTTTCTAGACCAT
BO09291.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:00:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4617-RC | 1257 | CG4617-PC | 1..1254 | 17..1270 | 6270 | 100 | Plus |
| CG4617-RA | 1257 | CG4617-PA | 1..1254 | 17..1270 | 6270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:00:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4617-RC | 1819 | CG4617-RC | 96..1351 | 15..1270 | 6280 | 100 | Plus |
| CG4617-RA | 1694 | CG4617-RA | 96..1351 | 15..1270 | 6280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:00:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7103023..7103731 | 1270..562 | 3545 | 100 | Minus |
| X | 23542271 | X | 7103792..7104305 | 563..50 | 2570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:00:40 has no hits.
BO09291.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:42 Download gff for
BO09291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4617-RA | 1..1257 | 17..1273 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:19 Download gff for
BO09291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4617-RA | 100..1363 | 9..1275 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:59:55 Download gff for
BO09291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4617-RA | 98..1351 | 17..1272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:42 Download gff for
BO09291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4617-RA | 100..1363 | 9..1275 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:33 Download gff for
BO09291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4617-RA | 98..1351 | 17..1272 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:33 Download gff for
BO09291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7103020..7103729 | 564..1272 | 99 | <- | Minus |
| X | 7103792..7104304 | 51..563 | 100 | <- | Minus |
| X | 7104361..7104394 | 17..50 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:59:55 Download gff for
BO09291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6997825..6998337 | 51..563 | 100 | <- | Minus |
| arm_X | 6997053..6997762 | 564..1272 | 99 | <- | Minus |
| arm_X | 6998394..6998427 | 17..50 | 100 | | Minus |
BO09291.pep Sequence
Translation from 16 to 1288
> BO09291.pep
MESPTSHLVAKDFQVTGVSRSGRVRKKSSKLLDFESPDEIEKRTRRHSGA
RQPARYSGRGRPSNALRDLDLDQEMLVDDGIISDSEEFHPDTTATVVAIL
NSDDELDNLVQDIVDGVQAEATSQESSVRQSLYMREKSNKRQVLKDGKVV
SAKVQRKDKGKQRYTAYSLWAKEARQKDLQDLDFTSATRRLSELWANVSN
RDKNTWRRKAKIEASRAKTRDKTAANGATQPASNGSTALADATQHETIFQ
NRATTSRTRKLAADRQQSSIEAAAAAAAAAATGTNTQRRSISTRSARSQV
SKSATKQAQVHTDADVSGRTGGQLKQEEVQKTSIEVIDAAAHLKLLGESL
TVIGERLKKHNGYVALSGSLSVLLDSLLCAMGPLLCMTTQIPGMENNVQL
SKNLADTLDNIAYVMPGLASFLDH
BO09291.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4617-PC | 418 | CG4617-PC | 1..418 | 1..418 | 2072 | 100 | Plus |
| CG4617-PA | 418 | CG4617-PA | 1..418 | 1..418 | 2072 | 100 | Plus |
