Clone Sequence Records
BO09292.3prime Sequence
623 bp (622 high quality bases) assembled on 2006-01-18
> BO09292.3prime
ATGGTCTAGAAAGCTTGCGGCGAATCTCTGGGAGACCATGATCTTGGCCG
AGAGCTTGGCAAAATTCGTGTGGCACTCGTTGCCGTGGAAATAGAGTCCA
ATAAGCAGCTTGAACTGGGCTGCTGACATGGGATACGGTTCCTGCGACAT
GACCACAATGGTGTCGATGCTTTTGCCCGCCTTCTGTTCCGCCAGATTGG
CCAGGATTTCGCGGTAATTCACAAAGGATGCGGAGCACTTGGCAATTTGC
CGGACCATTTTGTTCGTGGAGCACTGCTGCATCACAGGACGCAGTAGTGC
ATCCAAAACGAGCGACTGCAGATCAAAGACTATCAAATCGGGACTGCGCA
AGGATTCGGCGCTATCCTGCATTTCCAGCATGCGAAGCGGGGTGCTCTCC
ACATCCACCAGTTGCAGAATGGTCAGGTATTTGCTGCAGTTATGGGCCTC
CCATGGATAGCGCTTTGCCATTCCCTGCTGGCGACTGGTGATCAGTAAGA
CGCGCTTTTCTTTGGTGGCAAAGCGTTCGCATAGCTTTGCCAAATTAAGG
GCGTAATCCTCACTGCCCGTCAAATATATATAGTTATTGTTGCAGTCGCT
CAAACTCATGTCGACTGATAACT
BO09292.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4949-PA | 594 | CG4949-RA | 1..591 | 609..19 | 2955 | 100 | Minus |
CG4949-PB | 456 | CG4949-RB | 1..453 | 471..19 | 2265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4949-RC | 2339 | CG4949-RC | 95..685 | 609..19 | 2955 | 100 | Minus |
CG4949-RA | 2013 | CG4949-RA | 99..689 | 609..19 | 2955 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17079066..17079583 | 536..19 | 2590 | 100 | Minus |
X | 23542271 | X | 17078934..17079008 | 609..535 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:31:27 has no hits.
BO09292.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:53 Download gff for
BO09292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4949-PA | 1..594 | 18..609 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:09:18 Download gff for
BO09292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4949-PA | 1..594 | 18..609 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:07:06 Download gff for
BO09292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4949-RA | 90..689 | 19..621 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:16:42 Download gff for
BO09292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4949-RA | 90..689 | 19..621 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:16:42 Download gff for
BO09292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17078925..17079008 | 535..621 | 94 | -> | Minus |
X | 17079068..17079583 | 19..534 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:07:06 Download gff for
BO09292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16972958..16973041 | 535..621 | 94 | -> | Minus |
arm_X | 16973101..16973616 | 19..534 | 100 | | Minus |
BO09292.5prime Sequence
623 bp (622 high quality bases) assembled on 2006-01-18
> BO09292.5prime
GAAGTTATCAGTCGACATGAGTTTGAGCGACTGCAACAATAACTATATAT
ATTTGACGGGCAGTGAGGATTACGCCCTTAATTTGGCAAAGCTATGCGAA
CGCTTTGCCACCAAAGAAAAGCGCGTCTTACTGATCACCAGTCGCCAGCA
GGGAATGGCAAAGCGCTATCCATGGGAGGCCCATAACTGCAGCAAATACC
TGACCATTCTGCAACTGGTGGATGTGGAGAGCACCCCGCTTCGCATGCTG
GAAATGCAGGATAGCGCCGAATCCTTGCGCAGTCCCGATTTGATAGTCTT
TGATCTGCAGTCGCTCGTTTTGGATGCACTACTGCGTCCTGTGATGCAGC
AGTGCTCCACGAACAAAATGGTCCGGCAAATTGCCAAGTGCTCCGCATCC
TTTGTGAATTACCGCGAAATCCTGGCCAATCTGGCGGAACAGAAGGCGGG
CAAAAGCATCGACACCATTGTGGTCATGTCGCAGGAACCGTATCCCATGT
CAGCAGCCCAGTTCAAGCTGCTTATTGGACTCTATTTCCACGGCAACGAG
TGCCACACGAATTTTGCCAAGCTCTCGGCCAAGATCATGGTCTCCCAGAG
ATTCGCCGCAAGCTTTCTAGACC
BO09292.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4949-PA | 594 | CG4949-RA | 1..591 | 17..607 | 2955 | 100 | Plus |
CG4949-PB | 456 | CG4949-RB | 1..453 | 155..607 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:36:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4949-RC | 2339 | CG4949-RC | 95..685 | 17..607 | 2955 | 100 | Plus |
CG4949-RA | 2013 | CG4949-RA | 99..689 | 17..607 | 2955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:36:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17079066..17079583 | 90..607 | 2590 | 100 | Plus |
X | 23542271 | X | 17078934..17079008 | 17..91 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:36:21 has no hits.
BO09292.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:54 Download gff for
BO09292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4949-PA | 1..594 | 17..608 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:09:19 Download gff for
BO09292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4949-PA | 1..594 | 17..608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 16:54:18 Download gff for
BO09292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4949-RA | 90..689 | 5..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:32:23 Download gff for
BO09292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4949-RA | 90..689 | 5..607 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:32:23 Download gff for
BO09292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17078925..17079008 | 5..91 | 94 | -> | Plus |
X | 17079068..17079583 | 92..607 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 16:54:18 Download gff for
BO09292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16972958..16973041 | 5..91 | 94 | -> | Plus |
arm_X | 16973101..16973616 | 92..607 | 100 | | Plus |
BO09292.complete Sequence
625 bp (625 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631464
> BO09292.complete
GAAGTTATCAGTCGACATGAGTTTGAGCGACTGCAACAATAACTATATAT
ATTTGACGGGCAGTGAGGATTACGCCCTTAATTTGGCAAAGCTATGCGAA
CGCTTTGCCACCAAAGAAAAGCGCGTCTTACTGATCACCAGTCGCCAGCA
GGGAATGGCAAAGCGCTATCCATGGGAGGCCCATAACTGCAGCAAATACC
TGACCATTCTGCAACTGGTGGATGTGGAGAGCACCCCGCTTCGCATGCTG
GAAATGCAGGATAGCGCCGAATCCTTGCGCAGTCCCGATTTGATAGTCTT
TGATCTGCAGTCGCTCGTTTTGGATGCACTACTGCGTCCTGTGATGCAGC
AGTGCTCCACGAACAAAATGGTCCGGCAAATTGCCAAGTGCTCCGCATCC
TTTGTGAATTACCGCGAAATCCTGGCCAATCTGGCGGAACAGAAGGCGGG
CAAAAGCATCGACACCATTGTGGTCATGTCGCAGGAACCGTATCCCATGT
CAGCAGCCCAGTTCAAGCTGCTTATTGGACTCTATTTCCACGGCAACGAG
TGCCACACGAATTTTGCCAAGCTCTCGGCCAAGATCATGGTCTCCCAGAG
ATTCGCCGCAAGCTTTCTAGACCAT
BO09292.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:43:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4949-RC | 594 | CG4949-PC | 1..591 | 17..607 | 2955 | 100 | Plus |
CG4949-RA | 594 | CG4949-PA | 1..591 | 17..607 | 2955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:43:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4949-RC | 2339 | CG4949-RC | 95..685 | 17..607 | 2955 | 100 | Plus |
CG4949-RA | 2013 | CG4949-RA | 99..689 | 17..607 | 2955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:43:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17079066..17079583 | 90..607 | 2590 | 100 | Plus |
X | 23542271 | X | 17078934..17079008 | 17..91 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:43:52 has no hits.
BO09292.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:44 Download gff for
BO09292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4949-RA | 1..594 | 17..608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:20 Download gff for
BO09292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4949-RA | 54..653 | 5..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:31 Download gff for
BO09292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4949-RA | 99..689 | 17..609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:44 Download gff for
BO09292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4949-RA | 54..653 | 5..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:33 Download gff for
BO09292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4949-RA | 99..689 | 17..609 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:33 Download gff for
BO09292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17078934..17079008 | 17..91 | 100 | -> | Plus |
X | 17079068..17079583 | 92..609 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:31 Download gff for
BO09292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16972967..16973041 | 17..91 | 100 | -> | Plus |
arm_X | 16973101..16973616 | 92..609 | 99 | | Plus |
BO09292.pep Sequence
Translation from 16 to 625
> BO09292.pep
MSLSDCNNNYIYLTGSEDYALNLAKLCERFATKEKRVLLITSRQQGMAKR
YPWEAHNCSKYLTILQLVDVESTPLRMLEMQDSAESLRSPDLIVFDLQSL
VLDALLRPVMQQCSTNKMVRQIAKCSASFVNYREILANLAEQKAGKSIDT
IVVMSQEPYPMSAAQFKLLIGLYFHGNECHTNFAKLSAKIMVSQRFAASF
LDH
BO09292.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4949-PC | 197 | CG4949-PC | 1..197 | 1..197 | 1001 | 100 | Plus |
CG4949-PA | 197 | CG4949-PA | 1..197 | 1..197 | 1001 | 100 | Plus |