Clone BO09292 Report

Search the DGRC for BO09292

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:92
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG4949-RA
Protein status:BO09292.pep: validated full length
Sequenced Size:625

Clone Sequence Records

BO09292.3prime Sequence

623 bp (622 high quality bases) assembled on 2006-01-18

> BO09292.3prime
ATGGTCTAGAAAGCTTGCGGCGAATCTCTGGGAGACCATGATCTTGGCCG
AGAGCTTGGCAAAATTCGTGTGGCACTCGTTGCCGTGGAAATAGAGTCCA
ATAAGCAGCTTGAACTGGGCTGCTGACATGGGATACGGTTCCTGCGACAT
GACCACAATGGTGTCGATGCTTTTGCCCGCCTTCTGTTCCGCCAGATTGG
CCAGGATTTCGCGGTAATTCACAAAGGATGCGGAGCACTTGGCAATTTGC
CGGACCATTTTGTTCGTGGAGCACTGCTGCATCACAGGACGCAGTAGTGC
ATCCAAAACGAGCGACTGCAGATCAAAGACTATCAAATCGGGACTGCGCA
AGGATTCGGCGCTATCCTGCATTTCCAGCATGCGAAGCGGGGTGCTCTCC
ACATCCACCAGTTGCAGAATGGTCAGGTATTTGCTGCAGTTATGGGCCTC
CCATGGATAGCGCTTTGCCATTCCCTGCTGGCGACTGGTGATCAGTAAGA
CGCGCTTTTCTTTGGTGGCAAAGCGTTCGCATAGCTTTGCCAAATTAAGG
GCGTAATCCTCACTGCCCGTCAAATATATATAGTTATTGTTGCAGTCGCT
CAAACTCATGTCGACTGATAACT

BO09292.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4949-PA 594 CG4949-RA 1..591 609..19 2955 100 Minus
CG4949-PB 456 CG4949-RB 1..453 471..19 2265 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG4949-RC 2339 CG4949-RC 95..685 609..19 2955 100 Minus
CG4949-RA 2013 CG4949-RA 99..689 609..19 2955 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17079066..17079583 536..19 2590 100 Minus
X 23542271 X 17078934..17079008 609..535 375 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:31:27 has no hits.

BO09292.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:53 Download gff for BO09292.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4949-PA 1..594 18..609 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:09:18 Download gff for BO09292.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4949-PA 1..594 18..609 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:07:06 Download gff for BO09292.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4949-RA 90..689 19..621 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:16:42 Download gff for BO09292.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4949-RA 90..689 19..621 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:16:42 Download gff for BO09292.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17078925..17079008 535..621 94 -> Minus
X 17079068..17079583 19..534 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:07:06 Download gff for BO09292.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16972958..16973041 535..621 94 -> Minus
arm_X 16973101..16973616 19..534 100   Minus

BO09292.5prime Sequence

623 bp (622 high quality bases) assembled on 2006-01-18

> BO09292.5prime
GAAGTTATCAGTCGACATGAGTTTGAGCGACTGCAACAATAACTATATAT
ATTTGACGGGCAGTGAGGATTACGCCCTTAATTTGGCAAAGCTATGCGAA
CGCTTTGCCACCAAAGAAAAGCGCGTCTTACTGATCACCAGTCGCCAGCA
GGGAATGGCAAAGCGCTATCCATGGGAGGCCCATAACTGCAGCAAATACC
TGACCATTCTGCAACTGGTGGATGTGGAGAGCACCCCGCTTCGCATGCTG
GAAATGCAGGATAGCGCCGAATCCTTGCGCAGTCCCGATTTGATAGTCTT
TGATCTGCAGTCGCTCGTTTTGGATGCACTACTGCGTCCTGTGATGCAGC
AGTGCTCCACGAACAAAATGGTCCGGCAAATTGCCAAGTGCTCCGCATCC
TTTGTGAATTACCGCGAAATCCTGGCCAATCTGGCGGAACAGAAGGCGGG
CAAAAGCATCGACACCATTGTGGTCATGTCGCAGGAACCGTATCCCATGT
CAGCAGCCCAGTTCAAGCTGCTTATTGGACTCTATTTCCACGGCAACGAG
TGCCACACGAATTTTGCCAAGCTCTCGGCCAAGATCATGGTCTCCCAGAG
ATTCGCCGCAAGCTTTCTAGACC

BO09292.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4949-PA 594 CG4949-RA 1..591 17..607 2955 100 Plus
CG4949-PB 456 CG4949-RB 1..453 155..607 2265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG4949-RC 2339 CG4949-RC 95..685 17..607 2955 100 Plus
CG4949-RA 2013 CG4949-RA 99..689 17..607 2955 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17079066..17079583 90..607 2590 100 Plus
X 23542271 X 17078934..17079008 17..91 375 100 Plus
Blast to na_te.dros performed on 2015-02-12 23:36:21 has no hits.

BO09292.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:54 Download gff for BO09292.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4949-PA 1..594 17..608 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:09:19 Download gff for BO09292.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4949-PA 1..594 17..608 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 16:54:18 Download gff for BO09292.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4949-RA 90..689 5..607 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:32:23 Download gff for BO09292.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4949-RA 90..689 5..607 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:32:23 Download gff for BO09292.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17078925..17079008 5..91 94 -> Plus
X 17079068..17079583 92..607 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 16:54:18 Download gff for BO09292.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16972958..16973041 5..91 94 -> Plus
arm_X 16973101..16973616 92..607 100   Plus

BO09292.complete Sequence

625 bp (625 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631464

> BO09292.complete
GAAGTTATCAGTCGACATGAGTTTGAGCGACTGCAACAATAACTATATAT
ATTTGACGGGCAGTGAGGATTACGCCCTTAATTTGGCAAAGCTATGCGAA
CGCTTTGCCACCAAAGAAAAGCGCGTCTTACTGATCACCAGTCGCCAGCA
GGGAATGGCAAAGCGCTATCCATGGGAGGCCCATAACTGCAGCAAATACC
TGACCATTCTGCAACTGGTGGATGTGGAGAGCACCCCGCTTCGCATGCTG
GAAATGCAGGATAGCGCCGAATCCTTGCGCAGTCCCGATTTGATAGTCTT
TGATCTGCAGTCGCTCGTTTTGGATGCACTACTGCGTCCTGTGATGCAGC
AGTGCTCCACGAACAAAATGGTCCGGCAAATTGCCAAGTGCTCCGCATCC
TTTGTGAATTACCGCGAAATCCTGGCCAATCTGGCGGAACAGAAGGCGGG
CAAAAGCATCGACACCATTGTGGTCATGTCGCAGGAACCGTATCCCATGT
CAGCAGCCCAGTTCAAGCTGCTTATTGGACTCTATTTCCACGGCAACGAG
TGCCACACGAATTTTGCCAAGCTCTCGGCCAAGATCATGGTCTCCCAGAG
ATTCGCCGCAAGCTTTCTAGACCAT

BO09292.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4949-RC 594 CG4949-PC 1..591 17..607 2955 100 Plus
CG4949-RA 594 CG4949-PA 1..591 17..607 2955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG4949-RC 2339 CG4949-RC 95..685 17..607 2955 100 Plus
CG4949-RA 2013 CG4949-RA 99..689 17..607 2955 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17079066..17079583 90..607 2590 100 Plus
X 23542271 X 17078934..17079008 17..91 375 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:43:52 has no hits.

BO09292.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:44 Download gff for BO09292.complete
Subject Subject Range Query Range Percent Splice Strand
CG4949-RA 1..594 17..608 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:20 Download gff for BO09292.complete
Subject Subject Range Query Range Percent Splice Strand
CG4949-RA 54..653 5..607 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:31 Download gff for BO09292.complete
Subject Subject Range Query Range Percent Splice Strand
CG4949-RA 99..689 17..609 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:44 Download gff for BO09292.complete
Subject Subject Range Query Range Percent Splice Strand
CG4949-RA 54..653 5..607 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:33 Download gff for BO09292.complete
Subject Subject Range Query Range Percent Splice Strand
CG4949-RA 99..689 17..609 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:33 Download gff for BO09292.complete
Subject Subject Range Query Range Percent Splice Strand
X 17078934..17079008 17..91 100 -> Plus
X 17079068..17079583 92..609 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:31 Download gff for BO09292.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16972967..16973041 17..91 100 -> Plus
arm_X 16973101..16973616 92..609 99   Plus

BO09292.pep Sequence

Translation from 16 to 625

> BO09292.pep
MSLSDCNNNYIYLTGSEDYALNLAKLCERFATKEKRVLLITSRQQGMAKR
YPWEAHNCSKYLTILQLVDVESTPLRMLEMQDSAESLRSPDLIVFDLQSL
VLDALLRPVMQQCSTNKMVRQIAKCSASFVNYREILANLAEQKAGKSIDT
IVVMSQEPYPMSAAQFKLLIGLYFHGNECHTNFAKLSAKIMVSQRFAASF
LDH

BO09292.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4949-PC 197 CG4949-PC 1..197 1..197 1001 100 Plus
CG4949-PA 197 CG4949-PA 1..197 1..197 1001 100 Plus