Clone BO09293 Report

Search the DGRC for BO09293

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:92
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptClic-RA
Protein status:BO09293.pep: validated full length
Sequenced Size:814

Clone Sequence Records

BO09293.3prime Sequence

812 bp (811 high quality bases) assembled on 2006-01-18

> BO09293.3prime
ATGGTCTAGAAAGCTTGCCTCCGAAATATCAATTGGAATGTATGTGGTAA
ACGTGGGCGTCTCCAGCTCCTCGTGCTTCTTCATTTTGAGACTCTGTTGC
AGCTTGTAGTGATTGATAATGTCCTGGTCGGCCGGGCACGATTGTGTGAA
GGCGTCCAGCTGGTACATGTGATACATGTAGCGCCACAGGGCCGTCAAGT
GCGTCGGGATTTCAAAGTCGACAAAGTACTTGCCCGCCACACGGATGTGC
TGCAGGCGCGGCATCAGCTCACAGTCGAAGCAGCACATGGTGTCGCCGGT
GAGGAAGCGCGTGTTGCGCGCGGACAGATGATCGTTGATCTTGCGCAGAT
GCGAGAGCAGGGCGTTGTTCTTGGCCTCGTCCTTCTTTACCAGCATCAGC
TTCAACTTGACATACAGGTTCTCGATCAGGGTGGCCACCTCCTTGTCCTG
GACAAACAGATTGTAGCCGCCCGGTATGTTCTTCATGATGTGCCGCTCGA
TCTTTTCGTTCTCCAAAATGGCCAGCCCATTGTCAATGAGGATGGGCGGG
TGTGTGGCCTCAAAATTGGTACGGAAATCGGGCGGCGGCTTCTGCATATC
CACCGTCGTCACCTTCAGGCTGATCGTCTTCAGTTCGGCCAGTAGATATA
GGTCCATGAAGTACTCCTGGCAGAACAAACAGGCGCCCTTCCGCCTGCCG
TCGATGGTCGAGGCCTTTATGATCAATTCTATCTCGGGCACATCGAATTT
ACTGCTGCCGTTCGTCTCCTGGCTCTGCTGCGATTCAACTTCCGACATGT
CGACTGATAACT

BO09293.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG10997-PA 783 Clic-RA 1..780 798..19 3900 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 06:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
Clic-RC 1349 CG10997-RC 300..1079 798..19 3900 100 Minus
Clic-RA 1839 CG10997-RA 300..1079 798..19 3900 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 06:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13814377..13814888 205..716 2560 100 Plus
X 23542271 X 13813875..13813986 94..205 560 100 Plus
X 23542271 X 13821924..13822008 714..798 425 100 Plus
X 23542271 X 13813731..13813808 19..96 390 100 Plus
Blast to na_te.dros performed on 2015-02-01 06:49:24 has no hits.

BO09293.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:55 Download gff for BO09293.3prime
Subject Subject Range Query Range Percent Splice Strand
Clic-PA 1..783 18..798 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:09:20 Download gff for BO09293.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10997-PA 1..783 18..798 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:07:46 Download gff for BO09293.3prime
Subject Subject Range Query Range Percent Splice Strand
Clic-RA 293..1087 9..809 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:38:21 Download gff for BO09293.3prime
Subject Subject Range Query Range Percent Splice Strand
Clic-RA 293..1087 9..809 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:38:21 Download gff for BO09293.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13813723..13813805 9..93 95 <- Plus
X 13813875..13813985 94..204 100 <- Plus
X 13814377..13814886 205..714 100 <- Plus
X 13821925..13822015 715..809 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:07:46 Download gff for BO09293.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13707756..13707838 9..93 95 <- Plus
arm_X 13707908..13708018 94..204 100 <- Plus
arm_X 13715958..13716048 715..809 95   Plus
arm_X 13708410..13708919 205..714 100 <- Plus

BO09293.5prime Sequence

795 bp (794 high quality bases) assembled on 2006-01-18

> BO09293.5prime
GAAGTTATCAGTCGACATGTCGGAAGTTGAATCGCAGCAGAGCCAGGAGA
CGAACGGCAGCAGTAAATTCGATGTGCCCGAGATAGAATTGATCATAAAG
GCCTCGACCATCGACGGCAGGCGGAAGGGCGCCTGTTTGTTCTGCCAGGA
GTACTTCATGGACCTATATCTACTGGCCGAACTGAAGACGATCAGCCTGA
AGGTGACGACGGTGGATATGCAGAAGCCGCCGCCCGATTTCCGTACCAAT
TTTGAGGCCACACACCCGCCCATCCTCATTGACAATGGGCTGGCCATTTT
GGAGAACGAAAAGATCGAGCGGCACATCATGAAGAACATACCGGGCGGCT
ACAATCTGTTTGTCCAGGACAAGGAGGTGGCCACCCTGATCGAGAACCTG
TATGTCAAGTTGAAGCTGATGCTGGTAAAGAAGGACGAGGCCAAGAACAA
CGCCCTGCTCTCGCATCTGCGCAAGATCAACGATCATCTGTCCGCGCGCA
ACACGCGCTTCCTCACCGGCGACACCATGTGCTGCTTCGACTGTGAGCTG
ATGCCGCGCCTGCAGCACATCCGTGTGGCGGGCAAGTACTTTGTCGACTT
TGAAATCCCGACGCACTTGACGGCCCTGTGGCGCTACATGTATCACATGT
ACCAGCTGGACGCCTTCACACAATCGTGCCCGGCCGACCAGGACATTATC
AATCACTACAAGCTGCAACAGAGTCTCAAAATGAAGAAGCACGAGGAGCT
GGAGACGCCCACGTTTACCACATACATTCCAATTGATATTTCGGA

BO09293.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG10997-PA 783 Clic-RA 1..779 17..795 3895 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
Clic-RC 1349 CG10997-RC 300..1078 17..795 3895 100 Plus
Clic-RA 1839 CG10997-RA 300..1078 17..795 3895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13814377..13814888 610..99 2560 100 Minus
X 23542271 X 13813875..13813986 721..610 560 100 Minus
X 23542271 X 13821924..13822008 101..17 425 100 Minus
X 23542271 X 13813732..13813808 795..719 385 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:30:17 has no hits.

BO09293.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:56 Download gff for BO09293.5prime
Subject Subject Range Query Range Percent Splice Strand
Clic-PA 1..778 17..794 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:09:21 Download gff for BO09293.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10997-PA 1..778 17..794 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:14:40 Download gff for BO09293.5prime
Subject Subject Range Query Range Percent Splice Strand
Clic-RA 293..1077 6..794 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:09:19 Download gff for BO09293.5prime
Subject Subject Range Query Range Percent Splice Strand
Clic-RA 293..1077 6..794 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:09:19 Download gff for BO09293.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13813733..13813805 722..794 100 <- Minus
X 13813875..13813985 611..721 100 <- Minus
X 13814377..13814886 101..610 100 <- Minus
X 13821925..13822015 6..100 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:14:40 Download gff for BO09293.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13715958..13716048 6..100 95   Minus
arm_X 13707766..13707838 722..794 100 <- Minus
arm_X 13707908..13708018 611..721 100 <- Minus
arm_X 13708410..13708919 101..610 100 <- Minus

BO09293.complete Sequence

814 bp (814 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631465

> BO09293.complete
GAAGTTATCAGTCGACATGTCGGAAGTTGAATCGCAGCAGAGCCAGGAGA
CGAACGGCAGCAGTAAATTCGATGTGCCCGAGATAGAATTGATCATAAAG
GCCTCGACCATCGACGGCAGGCGGAAGGGCGCCTGTTTGTTCTGCCAGGA
GTACTTCATGGACCTATATCTACTGGCCGAACTGAAGACGATCAGCCTGA
AGGTGACGACGGTGGATATGCAGAAGCCGCCGCCCGATTTCCGTACCAAT
TTTGAGGCCACACACCCGCCCATCCTCATTGACAATGGGCTGGCCATTTT
GGAGAACGAAAAGATCGAGCGGCACATCATGAAGAACATACCGGGCGGCT
ACAATCTGTTTGTCCAGGACAAGGAGGTGGCCACCCTGATCGAGAACCTG
TATGTCAAGTTGAAGCTGATGCTGGTAAAGAAGGACGAGGCCAAGAACAA
CGCCCTGCTCTCGCATCTGCGCAAGATCAACGATCATCTGTCCGCGCGCA
ACACGCGCTTCCTCACCGGCGACACCATGTGCTGCTTCGACTGTGAGCTG
ATGCCGCGCCTGCAGCACATCCGTGTGGCGGGCAAGTACTTTGTCGACTT
TGAAATCCCGACGCACTTGACGGCCCTGTGGCGCTACATGTATCACATGT
ACCAGCTGGACGCCTTCACACAATCGTGCCCGGCCGACCAGGACATTATC
AATCACTACAAGCTGCAACAGAGTCTCAAAATGAAGAAGCACGAGGAGCT
GGAGACGCCCACGTTTACCACATACATTCCAATTGATATTTCGGAGGCAA
GCTTTCTAGACCAT

BO09293.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
Clic-RC 783 CG10997-PC 1..780 17..796 3900 100 Plus
Clic-RA 783 CG10997-PA 1..780 17..796 3900 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:01:28
Subject Length Description Subject Range Query Range Score Percent Strand
Clic-RC 1349 CG10997-RC 300..1079 17..796 3900 100 Plus
Clic-RA 1839 CG10997-RA 300..1079 17..796 3900 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:01:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13814377..13814888 610..99 2560 100 Minus
X 23542271 X 13813875..13813986 721..610 560 100 Minus
X 23542271 X 13821924..13822008 101..17 425 100 Minus
X 23542271 X 13813731..13813808 796..719 390 100 Minus
Blast to na_te.dros performed on 2014-11-27 17:01:26 has no hits.

BO09293.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:45 Download gff for BO09293.complete
Subject Subject Range Query Range Percent Splice Strand
Clic-RA 1..783 17..797 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:22 Download gff for BO09293.complete
Subject Subject Range Query Range Percent Splice Strand
Clic-RA 310..1104 6..806 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:28 Download gff for BO09293.complete
Subject Subject Range Query Range Percent Splice Strand
Clic-RA 300..1079 17..798 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:45 Download gff for BO09293.complete
Subject Subject Range Query Range Percent Splice Strand
Clic-RA 310..1104 6..806 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:36 Download gff for BO09293.complete
Subject Subject Range Query Range Percent Splice Strand
Clic-RA 300..1079 17..798 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:36 Download gff for BO09293.complete
Subject Subject Range Query Range Percent Splice Strand
X 13813729..13813805 722..798 97 <- Minus
X 13813875..13813985 611..721 100 <- Minus
X 13814377..13814886 101..610 100 <- Minus
X 13821925..13822008 17..100 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:28 Download gff for BO09293.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13707762..13707838 722..798 97 <- Minus
arm_X 13707908..13708018 611..721 100 <- Minus
arm_X 13708410..13708919 101..610 100 <- Minus
arm_X 13715958..13716041 17..100 100   Minus

BO09293.pep Sequence

Translation from 16 to 814

> BO09293.pep
MSEVESQQSQETNGSSKFDVPEIELIIKASTIDGRRKGACLFCQEYFMDL
YLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGLAILENEKI
ERHIMKNIPGGYNLFVQDKEVATLIENLYVKLKLMLVKKDEAKNNALLSH
LRKINDHLSARNTRFLTGDTMCCFDCELMPRLQHIRVAGKYFVDFEIPTH
LTALWRYMYHMYQLDAFTQSCPADQDIINHYKLQQSLKMKKHEELETPTF
TTYIPIDISEASFLDH

BO09293.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
Clic-PC 260 CG10997-PC 1..260 1..260 1365 100 Plus
Clic-PA 260 CG10997-PA 1..260 1..260 1365 100 Plus