Clone Sequence Records
BO09293.3prime Sequence
812 bp (811 high quality bases) assembled on 2006-01-18
> BO09293.3prime
ATGGTCTAGAAAGCTTGCCTCCGAAATATCAATTGGAATGTATGTGGTAA
ACGTGGGCGTCTCCAGCTCCTCGTGCTTCTTCATTTTGAGACTCTGTTGC
AGCTTGTAGTGATTGATAATGTCCTGGTCGGCCGGGCACGATTGTGTGAA
GGCGTCCAGCTGGTACATGTGATACATGTAGCGCCACAGGGCCGTCAAGT
GCGTCGGGATTTCAAAGTCGACAAAGTACTTGCCCGCCACACGGATGTGC
TGCAGGCGCGGCATCAGCTCACAGTCGAAGCAGCACATGGTGTCGCCGGT
GAGGAAGCGCGTGTTGCGCGCGGACAGATGATCGTTGATCTTGCGCAGAT
GCGAGAGCAGGGCGTTGTTCTTGGCCTCGTCCTTCTTTACCAGCATCAGC
TTCAACTTGACATACAGGTTCTCGATCAGGGTGGCCACCTCCTTGTCCTG
GACAAACAGATTGTAGCCGCCCGGTATGTTCTTCATGATGTGCCGCTCGA
TCTTTTCGTTCTCCAAAATGGCCAGCCCATTGTCAATGAGGATGGGCGGG
TGTGTGGCCTCAAAATTGGTACGGAAATCGGGCGGCGGCTTCTGCATATC
CACCGTCGTCACCTTCAGGCTGATCGTCTTCAGTTCGGCCAGTAGATATA
GGTCCATGAAGTACTCCTGGCAGAACAAACAGGCGCCCTTCCGCCTGCCG
TCGATGGTCGAGGCCTTTATGATCAATTCTATCTCGGGCACATCGAATTT
ACTGCTGCCGTTCGTCTCCTGGCTCTGCTGCGATTCAACTTCCGACATGT
CGACTGATAACT
BO09293.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10997-PA | 783 | Clic-RA | 1..780 | 798..19 | 3900 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 06:49:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Clic-RC | 1349 | CG10997-RC | 300..1079 | 798..19 | 3900 | 100 | Minus |
Clic-RA | 1839 | CG10997-RA | 300..1079 | 798..19 | 3900 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 06:49:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13814377..13814888 | 205..716 | 2560 | 100 | Plus |
X | 23542271 | X | 13813875..13813986 | 94..205 | 560 | 100 | Plus |
X | 23542271 | X | 13821924..13822008 | 714..798 | 425 | 100 | Plus |
X | 23542271 | X | 13813731..13813808 | 19..96 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 06:49:24 has no hits.
BO09293.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:55 Download gff for
BO09293.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clic-PA | 1..783 | 18..798 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:09:20 Download gff for
BO09293.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10997-PA | 1..783 | 18..798 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:07:46 Download gff for
BO09293.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clic-RA | 293..1087 | 9..809 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:38:21 Download gff for
BO09293.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clic-RA | 293..1087 | 9..809 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:38:21 Download gff for
BO09293.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13813723..13813805 | 9..93 | 95 | <- | Plus |
X | 13813875..13813985 | 94..204 | 100 | <- | Plus |
X | 13814377..13814886 | 205..714 | 100 | <- | Plus |
X | 13821925..13822015 | 715..809 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:07:46 Download gff for
BO09293.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13707756..13707838 | 9..93 | 95 | <- | Plus |
arm_X | 13707908..13708018 | 94..204 | 100 | <- | Plus |
arm_X | 13715958..13716048 | 715..809 | 95 | | Plus |
arm_X | 13708410..13708919 | 205..714 | 100 | <- | Plus |
BO09293.5prime Sequence
795 bp (794 high quality bases) assembled on 2006-01-18
> BO09293.5prime
GAAGTTATCAGTCGACATGTCGGAAGTTGAATCGCAGCAGAGCCAGGAGA
CGAACGGCAGCAGTAAATTCGATGTGCCCGAGATAGAATTGATCATAAAG
GCCTCGACCATCGACGGCAGGCGGAAGGGCGCCTGTTTGTTCTGCCAGGA
GTACTTCATGGACCTATATCTACTGGCCGAACTGAAGACGATCAGCCTGA
AGGTGACGACGGTGGATATGCAGAAGCCGCCGCCCGATTTCCGTACCAAT
TTTGAGGCCACACACCCGCCCATCCTCATTGACAATGGGCTGGCCATTTT
GGAGAACGAAAAGATCGAGCGGCACATCATGAAGAACATACCGGGCGGCT
ACAATCTGTTTGTCCAGGACAAGGAGGTGGCCACCCTGATCGAGAACCTG
TATGTCAAGTTGAAGCTGATGCTGGTAAAGAAGGACGAGGCCAAGAACAA
CGCCCTGCTCTCGCATCTGCGCAAGATCAACGATCATCTGTCCGCGCGCA
ACACGCGCTTCCTCACCGGCGACACCATGTGCTGCTTCGACTGTGAGCTG
ATGCCGCGCCTGCAGCACATCCGTGTGGCGGGCAAGTACTTTGTCGACTT
TGAAATCCCGACGCACTTGACGGCCCTGTGGCGCTACATGTATCACATGT
ACCAGCTGGACGCCTTCACACAATCGTGCCCGGCCGACCAGGACATTATC
AATCACTACAAGCTGCAACAGAGTCTCAAAATGAAGAAGCACGAGGAGCT
GGAGACGCCCACGTTTACCACATACATTCCAATTGATATTTCGGA
BO09293.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10997-PA | 783 | Clic-RA | 1..779 | 17..795 | 3895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:30:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Clic-RC | 1349 | CG10997-RC | 300..1078 | 17..795 | 3895 | 100 | Plus |
Clic-RA | 1839 | CG10997-RA | 300..1078 | 17..795 | 3895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:30:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13814377..13814888 | 610..99 | 2560 | 100 | Minus |
X | 23542271 | X | 13813875..13813986 | 721..610 | 560 | 100 | Minus |
X | 23542271 | X | 13821924..13822008 | 101..17 | 425 | 100 | Minus |
X | 23542271 | X | 13813732..13813808 | 795..719 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:30:17 has no hits.
BO09293.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:56 Download gff for
BO09293.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clic-PA | 1..778 | 17..794 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:09:21 Download gff for
BO09293.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10997-PA | 1..778 | 17..794 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:14:40 Download gff for
BO09293.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clic-RA | 293..1077 | 6..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:09:19 Download gff for
BO09293.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clic-RA | 293..1077 | 6..794 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:09:19 Download gff for
BO09293.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13813733..13813805 | 722..794 | 100 | <- | Minus |
X | 13813875..13813985 | 611..721 | 100 | <- | Minus |
X | 13814377..13814886 | 101..610 | 100 | <- | Minus |
X | 13821925..13822015 | 6..100 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:14:40 Download gff for
BO09293.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13715958..13716048 | 6..100 | 95 | | Minus |
arm_X | 13707766..13707838 | 722..794 | 100 | <- | Minus |
arm_X | 13707908..13708018 | 611..721 | 100 | <- | Minus |
arm_X | 13708410..13708919 | 101..610 | 100 | <- | Minus |
BO09293.complete Sequence
814 bp (814 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631465
> BO09293.complete
GAAGTTATCAGTCGACATGTCGGAAGTTGAATCGCAGCAGAGCCAGGAGA
CGAACGGCAGCAGTAAATTCGATGTGCCCGAGATAGAATTGATCATAAAG
GCCTCGACCATCGACGGCAGGCGGAAGGGCGCCTGTTTGTTCTGCCAGGA
GTACTTCATGGACCTATATCTACTGGCCGAACTGAAGACGATCAGCCTGA
AGGTGACGACGGTGGATATGCAGAAGCCGCCGCCCGATTTCCGTACCAAT
TTTGAGGCCACACACCCGCCCATCCTCATTGACAATGGGCTGGCCATTTT
GGAGAACGAAAAGATCGAGCGGCACATCATGAAGAACATACCGGGCGGCT
ACAATCTGTTTGTCCAGGACAAGGAGGTGGCCACCCTGATCGAGAACCTG
TATGTCAAGTTGAAGCTGATGCTGGTAAAGAAGGACGAGGCCAAGAACAA
CGCCCTGCTCTCGCATCTGCGCAAGATCAACGATCATCTGTCCGCGCGCA
ACACGCGCTTCCTCACCGGCGACACCATGTGCTGCTTCGACTGTGAGCTG
ATGCCGCGCCTGCAGCACATCCGTGTGGCGGGCAAGTACTTTGTCGACTT
TGAAATCCCGACGCACTTGACGGCCCTGTGGCGCTACATGTATCACATGT
ACCAGCTGGACGCCTTCACACAATCGTGCCCGGCCGACCAGGACATTATC
AATCACTACAAGCTGCAACAGAGTCTCAAAATGAAGAAGCACGAGGAGCT
GGAGACGCCCACGTTTACCACATACATTCCAATTGATATTTCGGAGGCAA
GCTTTCTAGACCAT
BO09293.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:01:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Clic-RC | 783 | CG10997-PC | 1..780 | 17..796 | 3900 | 100 | Plus |
Clic-RA | 783 | CG10997-PA | 1..780 | 17..796 | 3900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:01:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Clic-RC | 1349 | CG10997-RC | 300..1079 | 17..796 | 3900 | 100 | Plus |
Clic-RA | 1839 | CG10997-RA | 300..1079 | 17..796 | 3900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:01:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13814377..13814888 | 610..99 | 2560 | 100 | Minus |
X | 23542271 | X | 13813875..13813986 | 721..610 | 560 | 100 | Minus |
X | 23542271 | X | 13821924..13822008 | 101..17 | 425 | 100 | Minus |
X | 23542271 | X | 13813731..13813808 | 796..719 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:01:26 has no hits.
BO09293.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:45 Download gff for
BO09293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clic-RA | 1..783 | 17..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:22 Download gff for
BO09293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clic-RA | 310..1104 | 6..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:28 Download gff for
BO09293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clic-RA | 300..1079 | 17..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:45 Download gff for
BO09293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clic-RA | 310..1104 | 6..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:36 Download gff for
BO09293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clic-RA | 300..1079 | 17..798 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:36 Download gff for
BO09293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13813729..13813805 | 722..798 | 97 | <- | Minus |
X | 13813875..13813985 | 611..721 | 100 | <- | Minus |
X | 13814377..13814886 | 101..610 | 100 | <- | Minus |
X | 13821925..13822008 | 17..100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:28 Download gff for
BO09293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13707762..13707838 | 722..798 | 97 | <- | Minus |
arm_X | 13707908..13708018 | 611..721 | 100 | <- | Minus |
arm_X | 13708410..13708919 | 101..610 | 100 | <- | Minus |
arm_X | 13715958..13716041 | 17..100 | 100 | | Minus |
BO09293.pep Sequence
Translation from 16 to 814
> BO09293.pep
MSEVESQQSQETNGSSKFDVPEIELIIKASTIDGRRKGACLFCQEYFMDL
YLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGLAILENEKI
ERHIMKNIPGGYNLFVQDKEVATLIENLYVKLKLMLVKKDEAKNNALLSH
LRKINDHLSARNTRFLTGDTMCCFDCELMPRLQHIRVAGKYFVDFEIPTH
LTALWRYMYHMYQLDAFTQSCPADQDIINHYKLQQSLKMKKHEELETPTF
TTYIPIDISEASFLDH
BO09293.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Clic-PC | 260 | CG10997-PC | 1..260 | 1..260 | 1365 | 100 | Plus |
Clic-PA | 260 | CG10997-PA | 1..260 | 1..260 | 1365 | 100 | Plus |