Clone BO09294 Report

Search the DGRC for BO09294

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:92
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptSynd-RB
Protein status:BO09294.pep: validated full length
Sequenced Size:1516

Clone Sequence Records

BO09294.3prime Sequence

860 bp (858 high quality bases) assembled on 2006-01-18

> BO09294.3prime
ATGGTCTAGAAAGCTTGCCGCGGTCTCCACATAGTTGGCCGGATACAGTC
CGACGCGCCCATTCATGCGTCCCTTGCACCAGCCTTGTTCGTCTTCATCT
TCGAGCTTCTCGAAAACATCACCTTGCTTGAATGTGAGCTCATCACTTTC
AGCGCCCTCGTAATCATACAGCGCTTTGACCGGCACGCCTGGCTCACCGT
TGTCCACCAGCACGTTGTCGCTCTCGTCCCACTCCTCCTCCTCGTCGAAT
GGATTTGCATCGACTTTGCCGTTGCCGTTGGTTACGCTCGAGTTGCGATT
GGATGCCGCTGACGCCGCTGTTGCTGCTGCCGTTGCCGTCGCAGCGCCGG
CAACCGCCGCCGATGTTTTGGCTTCCGATGTGGTGACTGAGGATTGCGTG
GTCGCTATTTCGCTCTTCACACTCGCTCTGCTGCTGACACTGCTCAAGGT
GCTGGTGTTCTTCTTCAGGCTGTTTGTCTGGGGGTATTCGTGCACATCCT
CGGCCACAGGTCGCTGGTTGATGAGCGTGATGGGTGCTGCCGGCAGTGCC
TCTTTTGATTTGTTGCCCTTGGCAATGTCACGGAACTCCTCCGTATATTC
CACAAATGATGGCCAATTCATGGCCATGTTAATGCCATGATTGTTCGACC
ACCATTTTAGGTCTTTCTGCTGGTCTGCATTGTTGATCGTGTGGGAGAAC
TCCTCGTAGATTTGGGGCAGGCTTTGCACTTTTGTGAGGTCCAGGCACGA
GTGCACGTTGAACAGGATTTCTTTGAAGAACTGCAAACGCGTCTTCTCAA
AGGTTTGGCACTTTTCAAACACGGATGTCATGTCCTCGATGTACACCGAA
TTGTATTTGG

BO09294.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG33094-PB 1485 Synd-RB 641..1482 860..19 4210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:53
Subject Length Description Subject Range Query Range Score Percent Strand
Synd-RB 2022 CG33094-RB 719..1560 860..19 4210 100 Minus
Synd-RD 2287 CG33094-RD 719..1563 860..19 4170 99.6 Minus
Synd-RC 2281 CG33094-RC 713..1557 860..19 4170 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20838675..20838887 493..281 1050 99.5 Minus
3R 32079331 3R 20839058..20839218 280..120 805 100 Minus
3R 32079331 3R 20838123..20838261 860..722 695 100 Minus
3R 32079331 3R 20838323..20838446 723..600 620 100 Minus
3R 32079331 3R 20838512..20838624 601..489 565 100 Minus
3R 32079331 3R 20839289..20839394 124..19 530 100 Minus
Blast to na_te.dros performed 2015-02-10 18:03:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2275..2525 523..266 192 56.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6742..6897 411..267 186 62.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2420 380..266 167 61.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6752..6820 335..266 158 71.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6798 335..267 153 71 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6768..6876 373..267 153 61.5 Minus
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 3723..3786 270..331 144 71.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6841 389..266 142 59.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6726..6859 406..266 139 58.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1498..1590 396..299 126 63.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1527..1603 341..265 124 65.8 Minus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3219..3309 398..317 119 64.8 Minus
roo 9092 roo DM_ROO 9092bp 1088..1163 380..305 119 61.8 Minus

BO09294.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:57 Download gff for BO09294.3prime
Subject Subject Range Query Range Percent Splice Strand
Synd-PB 641..1485 15..860 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:09:23 Download gff for BO09294.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33094-PB 641..1485 15..860 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:18:38 Download gff for BO09294.3prime
Subject Subject Range Query Range Percent Splice Strand
Synd-RB 719..1565 13..860 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:14:26 Download gff for BO09294.3prime
Subject Subject Range Query Range Percent Splice Strand
Synd-RB 719..1565 13..860 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:14:26 Download gff for BO09294.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20838679..20838887 281..489 100 -> Minus
3R 20839058..20839215 123..280 100 -> Minus
3R 20839291..20839399 13..122 98   Minus
3R 20838123..20838261 722..860 100 -> Minus
3R 20838325..20838445 601..721 100 -> Minus
3R 20838513..20838623 490..600 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:18:38 Download gff for BO09294.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16663845..16663983 722..860 100 -> Minus
arm_3R 16664047..16664167 601..721 100 -> Minus
arm_3R 16664235..16664345 490..600 100 -> Minus
arm_3R 16664401..16664609 281..489 100 -> Minus
arm_3R 16664780..16664937 123..280 100 -> Minus
arm_3R 16665013..16665121 13..122 98   Minus

BO09294.5prime Sequence

910 bp (754 high quality bases) assembled on 2006-01-18

> BO09294.5prime
GAAGTTATCAGTCGACATGTCCCACCACAGCGATGATCAGCTCCTCCAGG
CTGGAAGCGATTCCTTCTGGGAGCCCGGCAACTACAAACGCACCACCAAG
CGGATCGAGGATGGTTACAAACTCTGCAATGACCTACAGCAACTGATTCA
GGAGCGTGCCGACATCGAGAAGGGATATGCGAAAAGCCTGCGCACCTGGT
CAAAGAAATGGGGTGAACTCATTGAGAAAGGCCCGGAATACGGAACCACG
GAGGCAGCCTGGAAGGGCGTTCTGACGGAATCGGAACGCATCTCCGACGT
TCACATGAAGATCAAGGACAATCTCTGCAACGATGTGAACAGCCAGATAA
AGACGTGGCAGAAGGAGAACTACCACCACACGCTTATGCAGATCAAGGAG
CGCAAGGACCTGGAGGATCTGTTCAAGAAGGCCCAGAAACCCTGGGCCAA
GCTGCTGGCAAAGGTCGAGAAGGCCAAAGCGGACTACCATTCGGCCTGCA
AGACGGAGCGCAGTGCTACCAATCAGGAACGCAATGCCAATGCCGATAGC
TCGTTGTCGCCGGATCAGGTGAAGAAAATGCACGATCGAGTGCAAAAGAC
CAAAGATCAAGTGCAAAAGTGCCGGGAAAAGTACGAGCAGGCGATTGCCG
AAATCACCAAATACAATTCGGTGTACATCGAGGACATGACATCCGTGTTT
GAAAAGTGCCAAACCTTTGAGAAGACGCGTTTGCAGTTCTTCAAAGAAAT
CCTGTTCAACGTGCACTCGTGCCTGGACCTCACAAAAGTGCAAAGCCTGC
CCCAAATCTACGAGGAGTTCTCCCACACGATCAACAATGCAGACCAGCAG
AAAGACCTAAATGGGTGTCGAACATCATGGCATTACATGGCCATGAATGG
CCATCATTTG

BO09294.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG33094-PB 1485 Synd-RB 1..845 17..861 4225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
Synd-RD 2287 CG33094-RD 79..976 17..910 4360 99.3 Plus
Synd-RC 2281 CG33094-RC 73..970 17..910 4360 99.3 Plus
Synd-RB 2022 CG33094-RB 79..976 17..910 4360 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20837583..20837924 229..570 1710 100 Plus
3R 32079331 3R 20838033..20838261 567..795 1145 100 Plus
3R 32079331 3R 20835875..20835985 121..231 555 100 Plus
3R 32079331 3R 20835228..20835331 17..120 520 100 Plus
3R 32079331 3R 20838323..20838443 794..910 375 95 Plus
Blast to na_te.dros performed on 2015-02-10 21:36:28 has no hits.

BO09294.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:58 Download gff for BO09294.5prime
Subject Subject Range Query Range Percent Splice Strand
Synd-PB 1..898 17..910 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:09:24 Download gff for BO09294.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33094-PB 1..898 17..910 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:25:22 Download gff for BO09294.5prime
Subject Subject Range Query Range Percent Splice Strand
Synd-RB 69..976 4..910 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:57 Download gff for BO09294.5prime
Subject Subject Range Query Range Percent Splice Strand
Synd-RB 69..976 4..910 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:57 Download gff for BO09294.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20835222..20835331 9..120 97 -> Plus
3R 20835875..20835984 121..230 100 -> Plus
3R 20837585..20837922 231..568 100 -> Plus
3R 20838035..20838261 569..795 100 -> Plus
3R 20838325..20838443 796..910 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:25:22 Download gff for BO09294.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16660944..16661053 9..120 97 -> Plus
arm_3R 16661597..16661706 121..230 100 -> Plus
arm_3R 16663307..16663644 231..568 100 -> Plus
arm_3R 16663757..16663983 569..795 100 -> Plus
arm_3R 16664047..16664165 796..910 95   Plus

BO09294.complete Sequence

1516 bp (1516 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631466

> BO09294.complete
GAAGTTATCAGTCGACATGTCCCACCACAGCGATGATCAGCTCCTCCAGG
CTGGAAGCGATTCCTTCTGGGAGCCCGGCAACTACAAACGCACCACCAAG
CGGATCGAGGATGGTTACAAACTCTGCAATGACCTACAGCAACTGATTCA
GGAGCGTGCCGACATCGAGAAGGGATATGCGAAAAGCCTGCGCACCTGGT
CAAAGAAATGGGGTGAACTCATTGAGAAAGGCCCGGAATACGGAACCACG
GAGGCAGCCTGGAAGGGCGTTCTGACGGAATCGGAACGCATCTCCGACGT
TCACATGAAGATCAAGGACAATCTCTGCAACGATGTGAACAGCCAGATAA
AGACGTGGCAGAAGGAGAACTACCACCACACGCTTATGCAGATCAAGGAG
CGCAAGGACCTGGAGGATCTGTTCAAGAAGGCCCAGAAACCCTGGGCCAA
GCTGCTGGCAAAGGTCGAGAAGGCCAAAGCGGACTACCATTCGGCCTGCA
AGACGGAGCGCAGTGCTACCAATCAGGAACGCAATGCCAATGCCGATAGC
TCGTTGTCGCCGGATCAGGTGAAGAAAATGCACGATCGAGTGCAAAAGAC
CAAAGATCAAGTGCAAAAGTGCCGGGAAAAGTACGAGCAGGCGATTGCCG
AAATCACCAAATACAATTCGGTGTACATCGAGGACATGACATCCGTGTTT
GAAAAGTGCCAAACCTTTGAGAAGACGCGTTTGCAGTTCTTCAAAGAAAT
CCTGTTCAACGTGCACTCGTGCCTGGACCTCACAAAAGTGCAAAGCCTGC
CCCAAATCTACGAGGAGTTCTCCCACACGATCAACAATGCAGACCAGCAG
AAAGACCTAAAATGGTGGTCGAACAATCATGGCATTAACATGGCCATGAA
TTGGCCATCATTTGTGGAATATACGGAGGAGTTCCGTGACATTGCCAAGG
GCAACAAATCAAAAGAGGCACTGCCGGCAGCACCCATCACGCTCATCAAC
CAGCGACCTGTGGCCGAGGATGTGCACGAATACCCCCAGACAAACAGCCT
GAAGAAGAACACCAGCACCTTGAGCAGTGTCAGCAGCAGAGCGAGTGTGA
AGAGCGAAATAGCGACCACGCAATCCTCAGTCACCACATCGGAAGCCAAA
ACATCGGCGGCGGTTGCCGGCGCTGCGACGGCAACGGCAGCAGCAACAGC
GGCGTCAGCGGCATCCAATCGCAACTCGAGCGTAACCAACGGCAACGGCA
AAGTCGATGCAAATCCATTCGACGAGGAGGAGGAGTGGGACGAGAGCGAC
AACGTGCTGGTGGACAACGGTGAGCCAGGCGTGCCGGTCAAAGCGCTGTA
TGATTACGAGGGCGCTGAAAGTGATGAGCTCACATTCAAGCAAGGTGATG
TTTTCGAGAAGCTCGAAGATGAAGACGAACAAGGCTGGTGCAAGGGACGC
ATGAATGGGCGCGTCGGACTGTATCCGGCCAACTATGTGGAGACCGCGGC
AAGCTTTCTAGACCAT

BO09294.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
Synd-RB 1485 CG33094-PB 1..1482 17..1498 7410 100 Plus
Synd-RD 1488 CG33094-PD 1..1485 17..1498 7345 99.8 Plus
Synd-RC 1488 CG33094-PC 1..1485 17..1498 7345 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
Synd-RB 2022 CG33094-RB 79..1560 17..1498 7410 100 Plus
Synd-RD 2287 CG33094-RD 79..1563 17..1498 7345 99.8 Plus
Synd-RC 2281 CG33094-RC 73..1557 17..1498 7345 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20837583..20837924 229..570 1710 100 Plus
3R 32079331 3R 20838033..20838261 567..795 1145 100 Plus
3R 32079331 3R 20838675..20838887 1024..1236 1050 99.5 Plus
3R 32079331 3R 20839058..20839218 1237..1397 805 100 Plus
3R 32079331 3R 20838323..20838446 794..917 620 100 Plus
3R 32079331 3R 20838512..20838624 916..1028 565 100 Plus
3R 32079331 3R 20835875..20835985 121..231 555 100 Plus
3R 32079331 3R 20839289..20839394 1393..1498 530 100 Plus
3R 32079331 3R 20835228..20835331 17..120 520 100 Plus
Blast to na_te.dros performed 2014-11-27 07:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2275..2525 994..1251 192 56.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6742..6897 1106..1250 186 62.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2420 1137..1251 167 61.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6752..6820 1182..1251 158 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6798 1182..1250 153 71 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6768..6876 1144..1250 153 61.5 Plus
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 3723..3786 1247..1186 144 71.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6841 1128..1251 142 59.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6726..6859 1111..1251 139 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1498..1590 1121..1218 126 63.3 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3219..3309 1119..1200 119 64.8 Plus
roo 9092 roo DM_ROO 9092bp 1088..1163 1137..1212 119 61.8 Plus

BO09294.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:46 Download gff for BO09294.complete
Subject Subject Range Query Range Percent Splice Strand
Synd-RB 1..1485 17..1502 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:24 Download gff for BO09294.complete
Subject Subject Range Query Range Percent Splice Strand
Synd-RB 83..1579 4..1504 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:04 Download gff for BO09294.complete
Subject Subject Range Query Range Percent Splice Strand
Synd-RB 79..1560 17..1500 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:46 Download gff for BO09294.complete
Subject Subject Range Query Range Percent Splice Strand
Synd-RB 83..1579 4..1504 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:12 Download gff for BO09294.complete
Subject Subject Range Query Range Percent Splice Strand
Synd-RB 79..1560 17..1500 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:12 Download gff for BO09294.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20837585..20837922 231..568 100 -> Plus
3R 20838035..20838261 569..795 100 -> Plus
3R 20838325..20838445 796..916 100 -> Plus
3R 20838513..20838623 917..1027 100 -> Plus
3R 20838679..20838887 1028..1236 100 -> Plus
3R 20839058..20839215 1237..1394 100 -> Plus
3R 20839291..20839394 1395..1500 98   Plus
3R 20835228..20835331 17..120 100 -> Plus
3R 20835875..20835984 121..230 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:04 Download gff for BO09294.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16663757..16663983 569..795 100 -> Plus
arm_3R 16660950..16661053 17..120 100 -> Plus
arm_3R 16661597..16661706 121..230 100 -> Plus
arm_3R 16663307..16663644 231..568 100 -> Plus
arm_3R 16664047..16664167 796..916 100 -> Plus
arm_3R 16664235..16664345 917..1027 100 -> Plus
arm_3R 16664401..16664609 1028..1236 100 -> Plus
arm_3R 16664780..16664937 1237..1394 100 -> Plus
arm_3R 16665013..16665116 1395..1500 98   Plus

BO09294.pep Sequence

Translation from 16 to 1516

> BO09294.pep
MSHHSDDQLLQAGSDSFWEPGNYKRTTKRIEDGYKLCNDLQQLIQERADI
EKGYAKSLRTWSKKWGELIEKGPEYGTTEAAWKGVLTESERISDVHMKIK
DNLCNDVNSQIKTWQKENYHHTLMQIKERKDLEDLFKKAQKPWAKLLAKV
EKAKADYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQ
KCREKYEQAIAEITKYNSVYIEDMTSVFEKCQTFEKTRLQFFKEILFNVH
SCLDLTKVQSLPQIYEEFSHTINNADQQKDLKWWSNNHGINMAMNWPSFV
EYTEEFRDIAKGNKSKEALPAAPITLINQRPVAEDVHEYPQTNSLKKNTS
TLSSVSSRASVKSEIATTQSSVTTSEAKTSAAVAGAATATAAATAASAAS
NRNSSVTNGNGKVDANPFDEEEEWDESDNVLVDNGEPGVPVKALYDYEGA
ESDELTFKQGDVFEKLEDEDEQGWCKGRMNGRVGLYPANYVETAASFLDH

BO09294.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:56
Subject Length Description Subject Range Query Range Score Percent Strand
Synd-PB 494 CG33094-PB 1..494 1..494 2593 100 Plus
Synd-PD 495 CG33094-PD 1..495 1..494 2581 99.8 Plus
Synd-PC 495 CG33094-PC 1..495 1..494 2581 99.8 Plus
Abp1-PA 531 CG10083-PA 355..528 320..492 158 28.4 Plus
Amph-PB 502 CG8604-PB 153..498 172..490 156 23.4 Plus