Clone BO09296 Report

Search the DGRC for BO09296

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:92
Well:96
Vector:pDNR-Dual
Associated Gene/Transcriptxl6-RA
Protein status:BO09296.pep: validated full length
Sequenced Size:808

Clone Sequence Records

BO09296.3prime Sequence

806 bp (800 high quality bases) assembled on 2006-01-18

> BO09296.3prime
ATGGTCTAGAAAGCTTGCGTCCCTTGAAACGGATCGTGAGGCGGACGAGT
CACCACGACGCCTGGGCGGCGATCCACGGCGCACCGCTGGCGACGCCGAT
CGAGATCGGGAACGCGACCGCGGCGATCCCCTAACCCGGTCATCGTCCTC
ATCCTCATAGCGCCGTTTTGGCGGCGGCGGTGAATCTACCGCTCCACTGC
CGTTGCGCTCGTGGTCGCTGTACCTCGACGCCGATCCGTTCTCGTCCCGT
CCGTTCGAGCGGCCGGAGCGACGGCCCACCGAGCCGGCGGAGCGACTGCG
GGATCGAGTTCCGGACTTGGAGCGAGTGCGCCTGCGTCGCGATGTGCTCC
GAGATCTGCTGAATGAGTTGCTTCTGCGTCGCTGCCTGGCCTTCCTTTCG
CGACAGTGGCGAGCGAAATGCCCCCGTCCGCCGCACTCGTAGCACTTATC
GTCCCCACGACCACCGCCGCCTCGGTCGCGTCCTCCGAGTCCTCCACCAC
CACCGCCTCCACCACCTCCGCCACCACCACCGCCGGACCTAGCATACTTT
CCGGTGGACAATTCCACACGGGCTCGGCGCCCGCAAACCGTCCGTCCGTC
CAATCCGCGCACCGCATCCGCCGCATCGCGGGCACTCTCAAACTCCACGA
AGGCGAAGCCCGGCGGATTGCGGGCTATCCAGACGCTGCGCAAACTGCCG
TACGCTCCAAATACATACTCCAGGTCGTTCTTCCGGGCATTGTTGCCCAG
ATCGCCCACGTACACCTTTCTATCGCTCGGATGGCGCGACATGTCGACTG
ATAACT

BO09296.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10203-PA 777 xl6-RA 1..774 792..19 3870 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
x16-RA 1707 CG10203-RA 269..1042 792..19 3870 100 Minus
x16-RB 1784 CG10203-RB 269..1039 792..19 3815 99.6 Minus
Rbp1-like-RC 1456 CG1987-RC 298..354 693..637 180 87.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6919524..6919942 374..792 2095 100 Plus
2L 23513712 2L 6915046..6915403 19..376 1790 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:44:45 has no hits.

BO09296.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:07:01 Download gff for BO09296.3prime
Subject Subject Range Query Range Percent Splice Strand
xl6-PA 1..777 18..792 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:09:28 Download gff for BO09296.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10203-PA 1..777 18..792 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:26:21 Download gff for BO09296.3prime
Subject Subject Range Query Range Percent Splice Strand
x16-RA 264..1046 13..800 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:06 Download gff for BO09296.3prime
Subject Subject Range Query Range Percent Splice Strand
x16-RA 264..1046 13..800 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:06 Download gff for BO09296.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6915042..6915400 13..373 99 <- Plus
2L 6919524..6919944 374..798 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:26:21 Download gff for BO09296.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6915042..6915400 13..373 99 <- Plus
arm_2L 6919524..6919944 374..798 98 <- Plus

BO09296.5prime Sequence

806 bp (751 high quality bases) assembled on 2006-01-18

> BO09296.5prime
GAAGTTATCAGTCGACATGTCGCGCCATCCGAGCGATAGAAAGGTGTACG
TGGGCGATCTGGGCAACAATGCCCGGAAGAACGACCTGGAGTATGTATTT
GGAGCGTACGGCAGTTTGCGCAGCGTCTGGATAGCCCGCAATCCGCCGGG
CTTCGCCTTCGTGGAGTTTGAGAGTGCCCGCGATGCGGCGGATGCGGTGC
GCGGATTGGACGGACGGACGGTTTGCGGGCGCCGAGCCCGTGTGGAATTG
TCCACCGGAAAGTATGCTAGGTCCGGCGGTGGTGGTGGCGGAGGTGGTGG
AGGCGGTGGTGGTGGAGGACTCGGAGGACGCGACCGAGGCGGCGGTGGTC
GTGGGGACGATAAGTGCTACGAGTGCGGCGGACGGGGGCATTTCGCTCGC
CACTGTCGCGAAAGGAAGGCCAGGCAGCGACGCAGAAGCAACTCATTCAG
CAGATCTCGGAGCACATCGCGACGCAGGCGCACTCGCTCCAAGTCCGGAA
CTCGATCCCGCAGTCGCTCCGCCGGCTCGGTGGGCCGTCGCTCCGGCCGC
TCGAACGGACGGGACGAGAACGGATCGGCGTCGAGGTACAGCGACCACGA
GCGCAACGGCAGTGGAGCGGTAGATTCACCGCCGCCGCCAAAACGGCGCT
ATGAGGATGAGGACGATGACCGGGTTAGGGGATCGCCGCGGTCGCGTTCC
CGATCTCGATCGGCGTCGCCAGCGGTGCGCCGTGGATCGCCGCCCAGGCG
TCGTGGTGACTCGTCCGCCTCACGATCCGTTTCAAGGGACGCAAGCTTTC
TAGACC

BO09296.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG10203-PA 777 xl6-RA 1..774 17..790 3870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
x16-RA 1707 CG10203-RA 269..1042 17..790 3870 100 Plus
x16-RB 1784 CG10203-RB 269..1039 17..790 3815 99.6 Plus
Rbp1-like-RC 1456 CG1987-RC 298..354 116..172 180 87.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6919524..6919942 435..17 2095 100 Minus
2L 23513712 2L 6915046..6915403 790..433 1790 100 Minus
Blast to na_te.dros performed on 2015-02-02 09:33:45 has no hits.

BO09296.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:07:03 Download gff for BO09296.5prime
Subject Subject Range Query Range Percent Splice Strand
xl6-PA 1..777 17..791 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:09:29 Download gff for BO09296.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10203-PA 1..777 17..791 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:24:00 Download gff for BO09296.5prime
Subject Subject Range Query Range Percent Splice Strand
x16-RA 264..1046 9..796 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:31:54 Download gff for BO09296.5prime
Subject Subject Range Query Range Percent Splice Strand
x16-RA 264..1046 9..796 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:31:54 Download gff for BO09296.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6915042..6915400 436..796 99 <- Minus
2L 6919524..6919944 11..435 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:24:00 Download gff for BO09296.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6915042..6915400 436..796 99 <- Minus
arm_2L 6919524..6919944 11..435 98 <- Minus

BO09296.complete Sequence

808 bp (808 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631467

> BO09296.complete
GAAGTTATCAGTCGACATGTCGCGCCATCCGAGCGATAGAAAGGTGTACG
TGGGCGATCTGGGCAACAATGCCCGGAAGAACGACCTGGAGTATGTATTT
GGAGCGTACGGCAGTTTGCGCAGCGTCTGGATAGCCCGCAATCCGCCGGG
CTTCGCCTTCGTGGAGTTTGAGAGTGCCCGCGATGCGGCGGATGCGGTGC
GCGGATTGGACGGACGGACGGTTTGCGGGCGCCGAGCCCGTGTGGAATTG
TCCACCGGAAAGTATGCTAGGTCCGGCGGTGGTGGTGGCGGAGGTGGTGG
AGGCGGTGGTGGTGGAGGACTCGGAGGACGCGACCGAGGCGGCGGTGGTC
GTGGGGACGATAAGTGCTACGAGTGCGGCGGACGGGGGCATTTCGCTCGC
CACTGTCGCGAAAGGAAGGCCAGGCAGCGACGCAGAAGCAACTCATTCAG
CAGATCTCGGAGCACATCGCGACGCAGGCGCACTCGCTCCAAGTCCGGAA
CTCGATCCCGCAGTCGCTCCGCCGGCTCGGTGGGCCGTCGCTCCGGCCGC
TCGAACGGACGGGACGAGAACGGATCGGCGTCGAGGTACAGCGACCACGA
GCGCAACGGCAGTGGAGCGGTAGATTCACCGCCGCCGCCAAAACGGCGCT
ATGAGGATGAGGACGATGACCGGGTTAGGGGATCGCCGCGGTCGCGTTCC
CGATCTCGATCGGCGTCGCCAGCGGTGCGCCGTGGATCGCCGCCCAGGCG
TCGTGGTGACTCGTCCGCCTCACGATCCGTTTCAAGGGACGCAAGCTTTC
TAGACCAT

BO09296.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
x16-RA 777 CG10203-PA 1..774 17..790 3870 100 Plus
x16-RB 774 CG10203-PB 1..771 17..790 3790 99.6 Plus
Rbp1-like-RC 477 CG1987-PC 109..165 116..172 180 87.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
x16-RA 1707 CG10203-RA 269..1042 17..790 3870 100 Plus
x16-RB 1784 CG10203-RB 269..1039 17..790 3790 99.6 Plus
Rbp1-like-RC 1456 CG1987-RC 298..354 116..172 180 87.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6919524..6919942 435..17 2095 100 Minus
2L 23513712 2L 6915046..6915403 790..433 1790 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:34:28 has no hits.

BO09296.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:19 Download gff for BO09296.complete
Subject Subject Range Query Range Percent Splice Strand
xl6-RA 1..777 17..791 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:22 Download gff for BO09296.complete
Subject Subject Range Query Range Percent Splice Strand
xl6-RA 328..1110 9..796 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:49 Download gff for BO09296.complete
Subject Subject Range Query Range Percent Splice Strand
x16-RA 269..1042 17..792 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:19 Download gff for BO09296.complete
Subject Subject Range Query Range Percent Splice Strand
xl6-RA 328..1110 9..796 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:21 Download gff for BO09296.complete
Subject Subject Range Query Range Percent Splice Strand
x16-RA 269..1042 17..792 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:21 Download gff for BO09296.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6915042..6915400 436..792 99 <- Minus
2L 6919524..6919942 17..435 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:49 Download gff for BO09296.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6915042..6915400 436..792 99 <- Minus
arm_2L 6919524..6919942 17..435 100   Minus

BO09296.pep Sequence

Translation from 16 to 808

> BO09296.pep
MSRHPSDRKVYVGDLGNNARKNDLEYVFGAYGSLRSVWIARNPPGFAFVE
FESARDAADAVRGLDGRTVCGRRARVELSTGKYARSGGGGGGGGGGGGGG
GLGGRDRGGGGRGDDKCYECGGRGHFARHCRERKARQRRRSNSFSRSRST
SRRRRTRSKSGTRSRSRSAGSVGRRSGRSNGRDENGSASRYSDHERNGSG
AVDSPPPPKRRYEDEDDDRVRGSPRSRSRSRSASPAVRRGSPPRRRGDSS
ASRSVSRDASFLDH

BO09296.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
x16-PA 258 CG10203-PA 1..258 1..258 1361 100 Plus
x16-PB 257 CG10203-PB 1..257 1..258 1344 99.6 Plus
Rbp1-like-PC 158 CG1987-PC 12..157 9..163 403 55.5 Plus
Rbp1-like-PA 158 CG1987-PA 12..157 9..163 403 55.5 Plus
Rbp1-like-PB 247 CG1987-PB 12..176 9..164 373 47.3 Plus