Clone Sequence Records
BO09296.3prime Sequence
806 bp (800 high quality bases) assembled on 2006-01-18
> BO09296.3prime
ATGGTCTAGAAAGCTTGCGTCCCTTGAAACGGATCGTGAGGCGGACGAGT
CACCACGACGCCTGGGCGGCGATCCACGGCGCACCGCTGGCGACGCCGAT
CGAGATCGGGAACGCGACCGCGGCGATCCCCTAACCCGGTCATCGTCCTC
ATCCTCATAGCGCCGTTTTGGCGGCGGCGGTGAATCTACCGCTCCACTGC
CGTTGCGCTCGTGGTCGCTGTACCTCGACGCCGATCCGTTCTCGTCCCGT
CCGTTCGAGCGGCCGGAGCGACGGCCCACCGAGCCGGCGGAGCGACTGCG
GGATCGAGTTCCGGACTTGGAGCGAGTGCGCCTGCGTCGCGATGTGCTCC
GAGATCTGCTGAATGAGTTGCTTCTGCGTCGCTGCCTGGCCTTCCTTTCG
CGACAGTGGCGAGCGAAATGCCCCCGTCCGCCGCACTCGTAGCACTTATC
GTCCCCACGACCACCGCCGCCTCGGTCGCGTCCTCCGAGTCCTCCACCAC
CACCGCCTCCACCACCTCCGCCACCACCACCGCCGGACCTAGCATACTTT
CCGGTGGACAATTCCACACGGGCTCGGCGCCCGCAAACCGTCCGTCCGTC
CAATCCGCGCACCGCATCCGCCGCATCGCGGGCACTCTCAAACTCCACGA
AGGCGAAGCCCGGCGGATTGCGGGCTATCCAGACGCTGCGCAAACTGCCG
TACGCTCCAAATACATACTCCAGGTCGTTCTTCCGGGCATTGTTGCCCAG
ATCGCCCACGTACACCTTTCTATCGCTCGGATGGCGCGACATGTCGACTG
ATAACT
BO09296.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10203-PA | 777 | xl6-RA | 1..774 | 792..19 | 3870 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:44:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
x16-RA | 1707 | CG10203-RA | 269..1042 | 792..19 | 3870 | 100 | Minus |
x16-RB | 1784 | CG10203-RB | 269..1039 | 792..19 | 3815 | 99.6 | Minus |
Rbp1-like-RC | 1456 | CG1987-RC | 298..354 | 693..637 | 180 | 87.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:44:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6919524..6919942 | 374..792 | 2095 | 100 | Plus |
2L | 23513712 | 2L | 6915046..6915403 | 19..376 | 1790 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:44:45 has no hits.
BO09296.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:07:01 Download gff for
BO09296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
xl6-PA | 1..777 | 18..792 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:09:28 Download gff for
BO09296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10203-PA | 1..777 | 18..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:26:21 Download gff for
BO09296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
x16-RA | 264..1046 | 13..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:06 Download gff for
BO09296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
x16-RA | 264..1046 | 13..800 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:06 Download gff for
BO09296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6915042..6915400 | 13..373 | 99 | <- | Plus |
2L | 6919524..6919944 | 374..798 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:26:21 Download gff for
BO09296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6915042..6915400 | 13..373 | 99 | <- | Plus |
arm_2L | 6919524..6919944 | 374..798 | 98 | <- | Plus |
BO09296.5prime Sequence
806 bp (751 high quality bases) assembled on 2006-01-18
> BO09296.5prime
GAAGTTATCAGTCGACATGTCGCGCCATCCGAGCGATAGAAAGGTGTACG
TGGGCGATCTGGGCAACAATGCCCGGAAGAACGACCTGGAGTATGTATTT
GGAGCGTACGGCAGTTTGCGCAGCGTCTGGATAGCCCGCAATCCGCCGGG
CTTCGCCTTCGTGGAGTTTGAGAGTGCCCGCGATGCGGCGGATGCGGTGC
GCGGATTGGACGGACGGACGGTTTGCGGGCGCCGAGCCCGTGTGGAATTG
TCCACCGGAAAGTATGCTAGGTCCGGCGGTGGTGGTGGCGGAGGTGGTGG
AGGCGGTGGTGGTGGAGGACTCGGAGGACGCGACCGAGGCGGCGGTGGTC
GTGGGGACGATAAGTGCTACGAGTGCGGCGGACGGGGGCATTTCGCTCGC
CACTGTCGCGAAAGGAAGGCCAGGCAGCGACGCAGAAGCAACTCATTCAG
CAGATCTCGGAGCACATCGCGACGCAGGCGCACTCGCTCCAAGTCCGGAA
CTCGATCCCGCAGTCGCTCCGCCGGCTCGGTGGGCCGTCGCTCCGGCCGC
TCGAACGGACGGGACGAGAACGGATCGGCGTCGAGGTACAGCGACCACGA
GCGCAACGGCAGTGGAGCGGTAGATTCACCGCCGCCGCCAAAACGGCGCT
ATGAGGATGAGGACGATGACCGGGTTAGGGGATCGCCGCGGTCGCGTTCC
CGATCTCGATCGGCGTCGCCAGCGGTGCGCCGTGGATCGCCGCCCAGGCG
TCGTGGTGACTCGTCCGCCTCACGATCCGTTTCAAGGGACGCAAGCTTTC
TAGACC
BO09296.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10203-PA | 777 | xl6-RA | 1..774 | 17..790 | 3870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:33:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
x16-RA | 1707 | CG10203-RA | 269..1042 | 17..790 | 3870 | 100 | Plus |
x16-RB | 1784 | CG10203-RB | 269..1039 | 17..790 | 3815 | 99.6 | Plus |
Rbp1-like-RC | 1456 | CG1987-RC | 298..354 | 116..172 | 180 | 87.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:33:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6919524..6919942 | 435..17 | 2095 | 100 | Minus |
2L | 23513712 | 2L | 6915046..6915403 | 790..433 | 1790 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 09:33:45 has no hits.
BO09296.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:07:03 Download gff for
BO09296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
xl6-PA | 1..777 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:09:29 Download gff for
BO09296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10203-PA | 1..777 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:24:00 Download gff for
BO09296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
x16-RA | 264..1046 | 9..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:31:54 Download gff for
BO09296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
x16-RA | 264..1046 | 9..796 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:31:54 Download gff for
BO09296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6915042..6915400 | 436..796 | 99 | <- | Minus |
2L | 6919524..6919944 | 11..435 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:24:00 Download gff for
BO09296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6915042..6915400 | 436..796 | 99 | <- | Minus |
arm_2L | 6919524..6919944 | 11..435 | 98 | <- | Minus |
BO09296.complete Sequence
808 bp (808 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631467
> BO09296.complete
GAAGTTATCAGTCGACATGTCGCGCCATCCGAGCGATAGAAAGGTGTACG
TGGGCGATCTGGGCAACAATGCCCGGAAGAACGACCTGGAGTATGTATTT
GGAGCGTACGGCAGTTTGCGCAGCGTCTGGATAGCCCGCAATCCGCCGGG
CTTCGCCTTCGTGGAGTTTGAGAGTGCCCGCGATGCGGCGGATGCGGTGC
GCGGATTGGACGGACGGACGGTTTGCGGGCGCCGAGCCCGTGTGGAATTG
TCCACCGGAAAGTATGCTAGGTCCGGCGGTGGTGGTGGCGGAGGTGGTGG
AGGCGGTGGTGGTGGAGGACTCGGAGGACGCGACCGAGGCGGCGGTGGTC
GTGGGGACGATAAGTGCTACGAGTGCGGCGGACGGGGGCATTTCGCTCGC
CACTGTCGCGAAAGGAAGGCCAGGCAGCGACGCAGAAGCAACTCATTCAG
CAGATCTCGGAGCACATCGCGACGCAGGCGCACTCGCTCCAAGTCCGGAA
CTCGATCCCGCAGTCGCTCCGCCGGCTCGGTGGGCCGTCGCTCCGGCCGC
TCGAACGGACGGGACGAGAACGGATCGGCGTCGAGGTACAGCGACCACGA
GCGCAACGGCAGTGGAGCGGTAGATTCACCGCCGCCGCCAAAACGGCGCT
ATGAGGATGAGGACGATGACCGGGTTAGGGGATCGCCGCGGTCGCGTTCC
CGATCTCGATCGGCGTCGCCAGCGGTGCGCCGTGGATCGCCGCCCAGGCG
TCGTGGTGACTCGTCCGCCTCACGATCCGTTTCAAGGGACGCAAGCTTTC
TAGACCAT
BO09296.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:34:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
x16-RA | 777 | CG10203-PA | 1..774 | 17..790 | 3870 | 100 | Plus |
x16-RB | 774 | CG10203-PB | 1..771 | 17..790 | 3790 | 99.6 | Plus |
Rbp1-like-RC | 477 | CG1987-PC | 109..165 | 116..172 | 180 | 87.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:34:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
x16-RA | 1707 | CG10203-RA | 269..1042 | 17..790 | 3870 | 100 | Plus |
x16-RB | 1784 | CG10203-RB | 269..1039 | 17..790 | 3790 | 99.6 | Plus |
Rbp1-like-RC | 1456 | CG1987-RC | 298..354 | 116..172 | 180 | 87.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:34:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6919524..6919942 | 435..17 | 2095 | 100 | Minus |
2L | 23513712 | 2L | 6915046..6915403 | 790..433 | 1790 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:34:28 has no hits.
BO09296.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:19 Download gff for
BO09296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
xl6-RA | 1..777 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:22 Download gff for
BO09296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
xl6-RA | 328..1110 | 9..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:49 Download gff for
BO09296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
x16-RA | 269..1042 | 17..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:19 Download gff for
BO09296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
xl6-RA | 328..1110 | 9..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:21 Download gff for
BO09296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
x16-RA | 269..1042 | 17..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:21 Download gff for
BO09296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6915042..6915400 | 436..792 | 99 | <- | Minus |
2L | 6919524..6919942 | 17..435 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:49 Download gff for
BO09296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6915042..6915400 | 436..792 | 99 | <- | Minus |
arm_2L | 6919524..6919942 | 17..435 | 100 | | Minus |
BO09296.pep Sequence
Translation from 16 to 808
> BO09296.pep
MSRHPSDRKVYVGDLGNNARKNDLEYVFGAYGSLRSVWIARNPPGFAFVE
FESARDAADAVRGLDGRTVCGRRARVELSTGKYARSGGGGGGGGGGGGGG
GLGGRDRGGGGRGDDKCYECGGRGHFARHCRERKARQRRRSNSFSRSRST
SRRRRTRSKSGTRSRSRSAGSVGRRSGRSNGRDENGSASRYSDHERNGSG
AVDSPPPPKRRYEDEDDDRVRGSPRSRSRSRSASPAVRRGSPPRRRGDSS
ASRSVSRDASFLDH
BO09296.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:47:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
x16-PA | 258 | CG10203-PA | 1..258 | 1..258 | 1361 | 100 | Plus |
x16-PB | 257 | CG10203-PB | 1..257 | 1..258 | 1344 | 99.6 | Plus |
Rbp1-like-PC | 158 | CG1987-PC | 12..157 | 9..163 | 403 | 55.5 | Plus |
Rbp1-like-PA | 158 | CG1987-PA | 12..157 | 9..163 | 403 | 55.5 | Plus |
Rbp1-like-PB | 247 | CG1987-PB | 12..176 | 9..164 | 373 | 47.3 | Plus |