Clone Sequence Records
BO09301.3prime Sequence
890 bp (809 high quality bases) assembled on 2006-01-18
> BO09301.3prime
ATGGTCTAGAAAGCTTGCCTTAAAATTAACTTTCTTTAGTCTCAGCGACT
TAATGGGTCTGACAATGCTCCTTCGCTCCTCGCGATGCTTTTTCATCTCC
GCCTCGCGCTTCTTGGCATGGAACTGTGACTTCTTCTGCTTGTTCACTTC
GAATGTCATCTGACGATTGCCCAGGGAGCGACCCACATTGGTGACCTGGC
CCTCCAGCTGGGACATGACCCTTACGCGATCCTGCAAGCTCGCTTTTTTG
ATGCGCTGCTGCAGTAGACTGCTGCCTTGATGTTGATCCAAGGGGGTCAT
GGTGAAACGGTTGCCATTGGTGGTGGGTTGTTGGCTGTGTCCATTCGTCT
GCGGTCTTTTTGCGGTATCCGAAATTTCATCCGGCTGCTGCTCGTCATCT
TCTAGCTCCTCCTCTTCCTCACGTTGTCGCTTCACCTGTTTGTACGCCTG
CTTCATTTCCTTGACATACTCCCTTCGGTCATCATCGTCAGATGAGGCCT
CATCTCCGCTGTCATCCTTCGTTTCGCCATCGCTCTTCTCGAAGCCAAAT
AGGTCCTCGTCATTATCGCTTTCCTCGCGCTGCTGTGCCTCGTCCGCGTG
CAACTCCGCCACATGAGCCACCTCCACGCGCTTCTTGAGTTCCTTGGCCT
TGGATTTATCCAGACGGTTCAGAACAGGAGCCAGCAGACGATACTCCTCG
GCAGACTTGTTAACTTCAAAGTCGGCATTCTCAAACATGGCCTTGAAACG
CGAGTCCTCCAGCAGGCTGGGCACATTTCGCTGCTTGGCACTGTTGGAAG
GATTGGCTTGCTCGTTCATAATCTTGAGAGCCAACTCTTTGTTGACTTTG
GGCAGCTTGGATTCGATTTGCAGGCGGGACTTGCGCTCAC
BO09301.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7516-PA | 2166 | CG7516-RA | 1292..2163 | 890..19 | 4335 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:53:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)34Fd-RA | 2321 | CG7516-RA | 1380..2251 | 890..19 | 4345 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:53:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14352664..14353535 | 19..890 | 4345 | 99.9 | Plus |
Blast to na_te.dros performed 2015-01-31 14:53:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 1699..1779 | 451..369 | 112 | 62.7 | Minus |
BO09301.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:07:03 Download gff for
BO09301.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7516-PA | 1292..2166 | 18..890 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:09:30 Download gff for
BO09301.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7516-PA | 1292..2166 | 18..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:10:24 Download gff for
BO09301.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)34Fd-RA | 1380..2251 | 19..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:32:19 Download gff for
BO09301.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)34Fd-RA | 1380..2251 | 19..890 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:32:19 Download gff for
BO09301.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14352664..14353535 | 19..890 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:10:24 Download gff for
BO09301.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14352664..14353535 | 19..890 | 99 | | Plus |
BO09301.5prime Sequence
873 bp (836 high quality bases) assembled on 2006-01-18
> BO09301.5prime
GAAGTTATCAGTCGACATGTTCGTAAACGAAGTTAACGATGTGAAGATCT
ACAACCTGAGCGCCGGCAAGTCGGTGCCAGATTGGCTGACGGATCGGCGA
AAGCGGTCACAGCTCATGAAAAAAGTGGACTCCCGGAGACAGATCGAGCT
CATCCAGGACTTCGATATGCCCGGCGTCTGCACCAGCATCCGCATGAGTC
CCGACCAACAGTACATCCTGGCCACCGGCACTTACAAGCCGCGCGTCAAG
TGCTTCGAGGTGTCCAACCTGTCTATCAAATTCGAGCGCTGCTTCGACGC
CGAGGTGACCACCTTTGAGGTGATTAGCGACGACTACAGCAAGATGGTGT
TCCTGCAATGCGATCGCTATGTGGAGATCCATGCGGCCCACGGGCGGCAC
TACAGACTAAGGATACCGCGCTTTGGACGCGACATGAAGTACCACAAGCC
CAGCTGCGACATGTTCATCGTGGGAGTGGGCAGGGACATTTTCCGACTCA
ATTTGGAGCGCGGTCAGTTCCTGCAACCCTTTGAAACGGATGGCAGCTGC
CTGAACGCCTGTGAAGTGAATCCAGAGCACCATCTTCTGGTAGCCGGTAC
CAAAGAAGGCACCGTAGAAGCCTGGGATCCACGTACCAAGCAACGATGTT
CAACTTTGGATGTAGCCATGAAGTTGCCGGGCGTCAAGGAGTTTCCATCG
GTCACGGCCCTCAAATTCCGGAACGGCTTGCACATGGGAGTGGGAACTGC
TTCGGGACACGTGCTGATCTACGACATTCGCGCCAAGCAACCGTTGCTGG
TGAAGAATCATCTGAATCGACTGCCCATCAAGCGTCTGGCCTTTAATCCG
GCTCAGAATGCCGTCTATAGTTT
BO09301.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7516-PA | 2166 | CG7516-RA | 1..857 | 17..873 | 4285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:49:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)34Fd-RA | 2321 | CG7516-RA | 89..945 | 17..873 | 4285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:49:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14354471..14354873 | 485..83 | 2015 | 100 | Minus |
| 2L | 23513712 | 2L | 14354030..14354419 | 873..484 | 1950 | 100 | Minus |
| 2L | 23513712 | 2L | 14354932..14354997 | 82..17 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:49:54 has no hits.
BO09301.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:07:05 Download gff for
BO09301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7516-PA | 1..857 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:09:31 Download gff for
BO09301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7516-PA | 1..857 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:17:56 Download gff for
BO09301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)34Fd-RA | 80..945 | 8..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:08:26 Download gff for
BO09301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)34Fd-RA | 80..945 | 8..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:08:26 Download gff for
BO09301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14354030..14354418 | 485..873 | 100 | <- | Minus |
| 2L | 14354472..14354873 | 83..484 | 100 | <- | Minus |
| 2L | 14354932..14355006 | 8..82 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:17:56 Download gff for
BO09301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14354030..14354418 | 485..873 | 100 | <- | Minus |
| arm_2L | 14354472..14354873 | 83..484 | 100 | <- | Minus |
| arm_2L | 14354932..14355006 | 8..82 | 94 | | Minus |
BO09301.complete Sequence
2197 bp (2197 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631468
> BO09301.complete
GAAGTTATCAGTCGACATGTTCGTAAACGAAGTTAACGATGTGAAGATCT
ACAACCTGAGCGCCGGCAAGTCGGTGCCAGATTGGCTGACGGATCGGCGA
AAGCGGTCACAGCTCATGAAAAAAGTGGACTCCCGGAGACAGATCGAGCT
CATCCAGGACTTCGATATGCCCGGCGTCTGCACCAGCATCCGCATGAGTC
CCGACCAACAGTACATCCTGGCCACCGGCACTTACAAGCCGCGCGTCAAG
TGCTTCGAGGTGTCCAACCTGTCTATCAAATTCGAGCGCTGCTTCGACGC
CGAGGTGACCACCTTTGAGGTGATTAGCGACGACTACAGCAAGATGGTGT
TCCTGCAATGCGATCGCTATGTGGAGATCCATGCGGCCCACGGGCGGCAC
TACAGACTAAGGATACCGCGCTTTGGACGCGACATGAAGTACCACAAGCC
CAGCTGCGACATGTTCATCGTGGGAGTGGGCAGGGACATTTTCCGACTCA
ATTTGGAGCGCGGTCAGTTCCTGCAACCCTTTGAAACGGATGGCAGCTGC
CTGAACGCCTGTGAAGTGAATCCAGAGCACCATCTTCTGGTAGCCGGTAC
CAAAGAAGGCACCGTAGAAGCCTGGGATCCACGTACCAAGCAACGATGTT
CAACTTTGGATGTAGCCATGAAGTTGCCGGGCGTCAAGGAGTTTCCATCG
GTCACGGCCCTCAAATTCCGGAACGGCTTGCACATGGGAGTGGGAACTGC
TTCGGGACACGTGCTGATCTACGACATTCGCGCCAAGCAACCGTTGCTGG
TGAAGAATCATCTGAATCGACTGCCCATCAAGCGTCTGGCCTTTAATCCG
GCTCAGAATGCCGTCTATAGTTTGGACGAGGCTACACTGAAGCTGTGGGA
CGAGCAGACAGGCAAGCAGATCGCCTACGTTGAGTCGACTTCGTCATTCA
ACGATTTTTGCACCATTCCCGACACGGGCATGTTCTTCGTAGCCCAGGAG
GATGTTAAGATGATGACCTATTATGTGCCTGCAATGGGTCCAGCACCCCG
ATGGTGCTCGTTCTTGGATAACCTCACCGAGGAGATCGAATCGGAGGTCG
TGGAGAATGTGTACGATGACTATCAGTTCGTCACAGCGAAGGAGCTGGCT
GAATTGGGAATGGAGCATCTCGTTGGCAGCAATCTTCTTAAGGGTTATAT
GCACGGATACTTTATGGACGCAAGATTGTACAACAAAGCCAAGGCAGTTG
TGGAACCCTTCGCCTTCGACCGCTTCCGCAAAGATAAGATCCGCCAAGAA
ATCGAAAGTGAGCGCAAGTCCCGCCTGCAAATCGAATCCAAGCTGCCCAA
AGTCAACAAAGAGTTGGCTCTCAAGATTATGGACGAGCAAGCCAATCCTT
CCAACAGTGCCAAGCAGCGAAATGTGCCCAGCCTGCTGGAGGACTCGCGT
TTCAAGGCCATGTTTGAGAATGCCGACTTTGAAGTTAACAAGTCTGCCGA
GGAGTATCGTCTGCTGGCTCCTGTTCTGAACCGTCTGGATAAATCCAAGG
CCAAGGAACTCAAGAAGCGCGTGGAGGTGGCTCATGTGGCGGAGTTGCAC
GCGGACGAGGCACAGCAGCGCGAGGAAAGCGATAATGACGAGGACCTATT
TGGCTTCGAGAAGAGCGATGGCGAAACGAAGGATGACAGCGGAGATGAGG
CCTCATCTGACGATGATGACCGAAGGGAGTATGTCAAGGAAATGAAGCAG
GCGTACAAACAGGTGAAGCGACAACGTGAGGAAGAGGAGGAGCTAGAAGA
TGACGAGCAGCAGCCGGATGAAATTTCGGATACCGCAAAAAGACCGCAGA
CGAATGGACACAGCCAACAACCCACCACCAATGGCAACCGTTTCACCATG
ACCCCCTTGGATCAACATCAAGGCAGCAGTCTACTGCAGCAGCGCATCAA
AAAAGCGAGCTTGCAGGATCGCGTAAGGGTCATGTCCCAGCTGGAGGGCC
AGGTCACCAATGTGGGTCGCTCCCTGGGCAATCGTCAGATGACATTCGAA
GTGAACAAGCAGAAGAAGTCACAGTTCCATGCCAAGAAGCGCGAGGCGGA
GATGAAAAAGCATCGCGAGGAGCGAAGGAGCATTGTCAGACCCATTAAGT
CGCTGAGACTAAAGAAAGTTAATTTTAAGGCAAGCTTTCTAGACCAT
BO09301.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:20:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)34Fd-RA | 2166 | CG7516-PA | 1..2163 | 17..2179 | 10815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)34Fd-RA | 2321 | CG7516-RA | 89..2251 | 17..2179 | 10815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14352664..14353637 | 2179..1206 | 4870 | 100 | Minus |
| 2L | 23513712 | 2L | 14353697..14354419 | 1206..484 | 3615 | 100 | Minus |
| 2L | 23513712 | 2L | 14354471..14354873 | 485..83 | 2015 | 100 | Minus |
| 2L | 23513712 | 2L | 14354932..14354997 | 82..17 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:20:18 has no hits.
BO09301.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:16 Download gff for
BO09301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7516-RA | 1..2166 | 17..2180 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:15 Download gff for
BO09301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7516-RA | 75..2246 | 8..2179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:18 Download gff for
BO09301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)34Fd-RA | 94..2251 | 22..2181 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:17 Download gff for
BO09301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7516-RA | 75..2246 | 8..2179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:05 Download gff for
BO09301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)34Fd-RA | 94..2251 | 22..2181 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:05 Download gff for
BO09301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14352662..14353636 | 1207..2181 | 99 | <- | Minus |
| 2L | 14353697..14354418 | 485..1206 | 100 | <- | Minus |
| 2L | 14354472..14354873 | 83..484 | 100 | <- | Minus |
| 2L | 14354932..14354992 | 22..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:18 Download gff for
BO09301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14354932..14354992 | 22..82 | 100 | | Minus |
| arm_2L | 14352662..14353636 | 1207..2181 | 99 | <- | Minus |
| arm_2L | 14353697..14354418 | 485..1206 | 100 | <- | Minus |
| arm_2L | 14354472..14354873 | 83..484 | 100 | <- | Minus |
BO09301.pep Sequence
Translation from 16 to 2197
> BO09301.pep
MFVNEVNDVKIYNLSAGKSVPDWLTDRRKRSQLMKKVDSRRQIELIQDFD
MPGVCTSIRMSPDQQYILATGTYKPRVKCFEVSNLSIKFERCFDAEVTTF
EVISDDYSKMVFLQCDRYVEIHAAHGRHYRLRIPRFGRDMKYHKPSCDMF
IVGVGRDIFRLNLERGQFLQPFETDGSCLNACEVNPEHHLLVAGTKEGTV
EAWDPRTKQRCSTLDVAMKLPGVKEFPSVTALKFRNGLHMGVGTASGHVL
IYDIRAKQPLLVKNHLNRLPIKRLAFNPAQNAVYSLDEATLKLWDEQTGK
QIAYVESTSSFNDFCTIPDTGMFFVAQEDVKMMTYYVPAMGPAPRWCSFL
DNLTEEIESEVVENVYDDYQFVTAKELAELGMEHLVGSNLLKGYMHGYFM
DARLYNKAKAVVEPFAFDRFRKDKIRQEIESERKSRLQIESKLPKVNKEL
ALKIMDEQANPSNSAKQRNVPSLLEDSRFKAMFENADFEVNKSAEEYRLL
APVLNRLDKSKAKELKKRVEVAHVAELHADEAQQREESDNDEDLFGFEKS
DGETKDDSGDEASSDDDDRREYVKEMKQAYKQVKRQREEEEELEDDEQQP
DEISDTAKRPQTNGHSQQPTTNGNRFTMTPLDQHQGSSLLQQRIKKASLQ
DRVRVMSQLEGQVTNVGRSLGNRQMTFEVNKQKKSQFHAKKREAEMKKHR
EERRSIVRPIKSLRLKKVNFKASFLDH
BO09301.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:00:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)34Fd-PA | 721 | CG7516-PA | 1..721 | 1..721 | 3742 | 100 | Plus |
