Clone Sequence Records
BO09304.3prime Sequence
835 bp (833 high quality bases) assembled on 2006-01-18
> BO09304.3prime
ATGGTCTAGAAAGCTTGCCTTGTTTCCGCCCCCACCCCATCCGAGGAATC
CCTTGACAAAGCCGGTAATGGAGGCTCCTTTCTTGCCGGGCGATTCAAGT
TTGCCCTCCAGCGAGGGAAGCTCCACGTAGGTCATAGCCAGGTCAAAGAA
AATCGGTTTGCATGGTATGGGTTCCATGTCAGGGGTTAGCTTGAACACGT
TAGGCGCCTTGGTGTGCAGGGACTGATCCTCCTTGTATAGTGACAAACGC
TCATACAGCGGTTTTGTGGTCTTCTGCGACTTGGTGGTGGTTCCGGACTC
CTCGCTGTTGTCATCCTCCAGCACACTGTATGCATGGGCGGAGAACTTGC
ATCCGTCAATGGCGGACACGACCTTTTTGAGTTCCTCCTGCAGCTGAAAC
TCCGGGCTACTCTTGCCTTTCAGCGCCTCGGTGGCGTAGTTAGATGCGCG
TTCGTAAAGCGCCACGGCTTCTTTCCATTTCTTTATGTCGATGAGTGTGA
GCGCAATGTAGTAGCAGCGGAAGGCCTTGAAGGTGATGGCCAGGTTCTCC
ACCTCGCTTTGGTACGTGGCGTCGTCCTCCAAACCGTTTATCTGCTGCAT
TTCCGTCACGTTCTGCAGGATGATCTCGTAAAGACGGGCCAAATCCTGGG
GTCGGACGCGTTTGCCGTCACCCACATTTTGTTGAGACTGCAGGTTGGGA
TCGTAAAAGTTGAGCTTAGCCTGTTCCACTAGGCAAAGATTACGCTGCAG
TGTACGGCTATGGCGAATATAACTTAAATATGCCAGTAGATATTGTACGC
CGGATACGGTCTGACCGGTGGTTAACGAACGCAGC
BO09304.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5064-PA | 1815 | CG5064-RA | 996..1812 | 835..19 | 4085 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:16:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Srp68-RA | 2132 | CG5064-RA | 1074..1890 | 835..19 | 4085 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:16:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8976455..8977159 | 723..19 | 3525 | 100 | Minus |
| 3L | 28110227 | 3L | 8976285..8976400 | 835..720 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:16:14 has no hits.
BO09304.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:07:08 Download gff for
BO09304.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5064-PA | 996..1815 | 16..835 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:09:35 Download gff for
BO09304.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5064-PA | 996..1815 | 16..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:35:40 Download gff for
BO09304.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp68-RA | 1074..1895 | 14..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:07:28 Download gff for
BO09304.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp68-RA | 1074..1895 | 14..835 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:07:28 Download gff for
BO09304.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8976285..8976399 | 721..835 | 100 | -> | Minus |
| 3L | 8976458..8977164 | 14..720 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:35:40 Download gff for
BO09304.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8969385..8969499 | 721..835 | 100 | -> | Minus |
| arm_3L | 8969558..8970264 | 14..720 | 99 | | Minus |
BO09304.5prime Sequence
883 bp (875 high quality bases) assembled on 2006-01-18
> BO09304.5prime
GAAGTTATCAGTCGACATGGTCGTGCAAGAAGATAATCCAAATACTGGGG
ACGTTCAGGAAAAGACGGAGACTGCTCCGGTGGCAGAGCCCTCCAAGATC
TTCACGGTGGAGATTCTGCACATGATTAAGGATGCCCAGCAACAACACGG
CCTGCGCCACGGCGACTTCCAGAGGTACCGCGGATACTGCAGCCGCCGCA
TCCGTCGATTGAGGAAGGCCCTGAAGTACCCCCAGGGCGACAAGCGGCAC
TTCAAAAGACGCGACGTGACCATTGGCCAATTGACAGGCAAGAAGGCGGA
CGAGCGTTTCATCCACATCCCATTGATCTGCGCCGAGCGGGCCTGGGCGT
ATGCCATGCAGCTCAAGCAGGAGTCCAATACGGAGCCGCGAAAGCGTTTC
CATCTGGTCAACAAGCTGCGCAGGGCCTGTTTCTATGCCCTCCAGCTCCA
GGAGTTGTGTAATACGGAGGCTTTCGATGCGCGCACTAAGCTAGAGTGCG
AAGCCTATGTTGCCTGGATGCACGGAACCCTGCACTTTGAGCTGCAGCTA
TGGAAAACCGCTGGCGAGCACCTAAAGCGCGCCCAAGTGGTGTACGAAAA
CCTGGGCAAGGCTCTGCCCGAAGATGAACAAGAGCTTTACCGCGCTAAGG
TTAATGAATTTACGCCCAATCTGCGCTACTGCGCCTACAACATCAGCGGT
GGCGCCAGTGGCGGCAAGATCGACGAGATCCTGGAGCTGCGCGCTCAGGG
AGTGCTTGAGAATCTTGACGTACTGGTCAGTCAGACAAAGACGGAGAGCA
GCGAGGGCCTGCAGACGATCGACTGGCGCGGTCGCAAGGTCACCGTGCGT
CCGGAGAAGGTGCGTTTGTTCCTGCTCAGTGCT
BO09304.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5064-PA | 1815 | CG5064-RA | 1..867 | 17..883 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Srp68-RA | 2132 | CG5064-RA | 79..945 | 17..883 | 4335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8975737..8976156 | 464..883 | 2100 | 100 | Plus |
| 3L | 28110227 | 3L | 8975325..8975674 | 114..463 | 1750 | 100 | Plus |
| 3L | 28110227 | 3L | 8975124..8975220 | 17..113 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:39:34 has no hits.
BO09304.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:07:09 Download gff for
BO09304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5064-PA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:09:37 Download gff for
BO09304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5064-PA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:36:57 Download gff for
BO09304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp68-RA | 74..945 | 10..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:04:49 Download gff for
BO09304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp68-RA | 74..945 | 10..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:04:49 Download gff for
BO09304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8975119..8975220 | 10..113 | 96 | -> | Plus |
| 3L | 8975325..8975674 | 114..463 | 100 | -> | Plus |
| 3L | 8975737..8976156 | 464..883 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:36:57 Download gff for
BO09304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8968219..8968320 | 10..113 | 96 | -> | Plus |
| arm_3L | 8968425..8968774 | 114..463 | 100 | -> | Plus |
| arm_3L | 8968837..8969256 | 464..883 | 100 | | Plus |
BO09304.complete Sequence
1846 bp (1846 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631469
> BO09304.complete
GAAGTTATCAGTCGACATGGTCGTGCAAGAAGATAATCCAAATACTGGGG
ACGTTCAGGAAAAGACGGAGACTGCTCCGGTGGCAGAGCCCTCCAAGATC
TTCACGGTGGAGATTCTGCACATGATTAAGGATGCCCAGCAACAACACGG
CCTGCGCCACGGCGACTTCCAGAGGTACCGCGGATACTGCAGCCGCCGCA
TCCGTCGATTGAGGAAGGCCCTGAAGTACCCCCAGGGCGACAAGCGGCAC
TTCAAAAGACGCGACGTGACCATTGGCCAATTGACAGGCAAGAAGGCGGA
CGAGCGTTTCATCCACATCCCATTGATCTGCGCCGAGCGGGCCTGGGCGT
ATGCCATGCAGCTCAAGCAGGAGTCCAATACGGAGCCGCGAAAGCGTTTC
CATCTGGTCAACAAGCTGCGCAGGGCCTGTTTCTATGCCCTCCAGCTCCA
GGAGTTGTGTAATACGGAGGCTTTCGATGCGCGCACTAAGCTAGAGTGCG
AAGCCTATGTTGCCTGGATGCACGGAACCCTGCACTTTGAGCTGCAGCTA
TGGAAAACCGCTGGCGAGCACCTAAAGCGCGCCCAAGTGGTGTACGAAAA
CCTGGGCAAGGCTCTGCCCGAAGATGAACAAGAGCTTTACCGCGCTAAGG
TTAATGAATTTACGCCCAATCTGCGCTACTGCGCCTACAACATCAGCGGT
GGCGCCAGTGGCGGCAAGATCGACGAGATCCTGGAGCTGCGCGCTCAGGG
AGTGCTTGAGAATCTTGACGTACTGGTCAGTCAGACAAAGACGGAGAGCA
GCGAGGGCCTGCAGACGATCGACTGGCGCGGTCGCAAGGTCACCGTGCGT
CCGGAGAAGGTGCGTTTGTTCCTGCTCAGTGCTCAGGAGTTGGACAAGTC
GCTGGCCAAGACCACCAAGCAGGATGCCAAGATAGAATTGATTGAGCGTA
TTTTGATGGACTGCAAGGATGCCATCCAGGCCGTTCGCGACGAAATCAAA
CAGGATCCCAAGCTGCGTTCGTTAACCACCGGTCAGACCGTATCCGGCGT
ACAATATCTACTGGCATATTTAAGTTATATTCGCCATAGCCGTACACTGC
AGCGTAATCTTTGCCTAGTGGAACAGGCTAAGCTCAACTTTTACGATCCC
AACCTGCAGTCTCAACAAAATGTGGGTGACGGCAAACGCGTCCGACCCCA
GGATTTGGCCCGTCTTTACGAGATCATCCTGCAGAACGTGACGGAAATGC
AGCAGATAAACGGTTTGGAGGACGACGCCACGTACCAAAGCGAGGTGGAG
AACCTGGCCATCACCTTCAAGGCCTTCCGCTGCTACTACATTGCGCTCAC
ACTCATCGACATAAAGAAATGGAAAGAAGCCGTGGCGCTTTACGAACGCG
CATCTAACTACGCCACCGAGGCGCTGAAAGGCAAGAGTAGCCCGGAGTTT
CAGCTGCAGGAGGAACTCAAAAAGGTCGTGTCCGCCATTGACGGATGCAA
GTTCTCCGCCCATGCATACAGTGTGCTGGAGGATGACAACAGCGAGGAGT
CCGGAACCACCACCAAGTCGCAGAAGACCACAAAACCGCTGTATGAGCGT
TTGTCACTATACAAGGAGGATCAGTCCCTGCACACCAAGGCGCCTAACGT
GTTCAAGCTAACCCCTGACATGGAACCCATACCATGCAAACCGATTTTCT
TTGACCTGGCTATGACCTACGTGGAGCTTCCCTCGCTGGAGGGCAAACTT
GAATCGCCCGGCAAGAAAGGAGCCTCCATTACCGGCTTTGTCAAGGGATT
CCTCGGATGGGGTGGGGGCGGAAACAAGGCAAGCTTTCTAGACCAT
BO09304.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:56:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Srp68-RA | 1815 | CG5064-PA | 1..1812 | 17..1828 | 9060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:56:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Srp68-RA | 2132 | CG5064-RA | 79..1890 | 17..1828 | 9060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:56:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8976455..8977159 | 1124..1828 | 3525 | 100 | Plus |
| 3L | 28110227 | 3L | 8975737..8976400 | 464..1127 | 3320 | 100 | Plus |
| 3L | 28110227 | 3L | 8975325..8975674 | 114..463 | 1750 | 100 | Plus |
| 3L | 28110227 | 3L | 8975124..8975220 | 17..113 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:56:36 has no hits.
BO09304.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:18 Download gff for
BO09304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp68-RA | 1..1815 | 17..1831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:16 Download gff for
BO09304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp68-RA | 72..1893 | 10..1833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:47 Download gff for
BO09304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp68-RA | 79..1890 | 17..1830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:18 Download gff for
BO09304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp68-RA | 72..1893 | 10..1833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:53 Download gff for
BO09304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp68-RA | 79..1890 | 17..1830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:53 Download gff for
BO09304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8975124..8975220 | 17..113 | 100 | -> | Plus |
| 3L | 8975325..8975674 | 114..463 | 100 | -> | Plus |
| 3L | 8975737..8976399 | 464..1126 | 100 | -> | Plus |
| 3L | 8976458..8977159 | 1127..1830 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:47 Download gff for
BO09304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8968224..8968320 | 17..113 | 100 | -> | Plus |
| arm_3L | 8968425..8968774 | 114..463 | 100 | -> | Plus |
| arm_3L | 8968837..8969499 | 464..1126 | 100 | -> | Plus |
| arm_3L | 8969558..8970259 | 1127..1830 | 99 | | Plus |
BO09304.pep Sequence
Translation from 16 to 1846
> BO09304.pep
MVVQEDNPNTGDVQEKTETAPVAEPSKIFTVEILHMIKDAQQQHGLRHGD
FQRYRGYCSRRIRRLRKALKYPQGDKRHFKRRDVTIGQLTGKKADERFIH
IPLICAERAWAYAMQLKQESNTEPRKRFHLVNKLRRACFYALQLQELCNT
EAFDARTKLECEAYVAWMHGTLHFELQLWKTAGEHLKRAQVVYENLGKAL
PEDEQELYRAKVNEFTPNLRYCAYNISGGASGGKIDEILELRAQGVLENL
DVLVSQTKTESSEGLQTIDWRGRKVTVRPEKVRLFLLSAQELDKSLAKTT
KQDAKIELIERILMDCKDAIQAVRDEIKQDPKLRSLTTGQTVSGVQYLLA
YLSYIRHSRTLQRNLCLVEQAKLNFYDPNLQSQQNVGDGKRVRPQDLARL
YEIILQNVTEMQQINGLEDDATYQSEVENLAITFKAFRCYYIALTLIDIK
KWKEAVALYERASNYATEALKGKSSPEFQLQEELKKVVSAIDGCKFSAHA
YSVLEDDNSEESGTTTKSQKTTKPLYERLSLYKEDQSLHTKAPNVFKLTP
DMEPIPCKPIFFDLAMTYVELPSLEGKLESPGKKGASITGFVKGFLGWGG
GGNKASFLDH
BO09304.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:00:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Srp68-PA | 604 | CG5064-PA | 1..604 | 1..604 | 3130 | 100 | Plus |
