Clone BO09305 Report

Search the DGRC for BO09305

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:93
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptCG6412-RA
Protein status:BO09305.pep: validated full length
Sequenced Size:988

Clone Sequence Records

BO09305.3prime Sequence

931 bp (844 high quality bases) assembled on 2006-01-18

> BO09305.3prime
ATGGTCTAGAAAGCTTGCATTGCTGCTCTGGTGCTGCGAGCGAATGATCG
CCTCCAGGCTGCGTTCCGTGTGCTCTCCGCACTCGAAGCGATGGTAGTCG
ACGATCTCGCAGTTGTGCTCCTGCAAAGCCTCGCCCACCGTCTTGTCCGC
ATCGAGCAGATACTCCTGGTGAATCAGGCACGTCTCATCGTCCTTGTTCT
CCGCCGGCTTGTCCTTGTCATATTCGCCGATCTTTGTCGGCTTCATGCCC
ACGATTTGCTGGCAAATGCTCTTGTGAAACTCAAAGTCCAGCAGGGGGTG
CGTGGATCGGTAGGCTACGATCGCTCCGTACTTGCCCACCTGGGTGATGC
CTTCCGTGGTGCCCACATTGGTGGGTGCGGGATGGGCGTAGCCCACCAGC
TTCAGGTCGTTGTTAGCCTTAAAGCACAATGCGCGCCGGATGGTGGCATT
CTCCCCGATGGCGCCGATCAGCAGAGCCAGGTGGTCGCCCAACGTGCGTC
CCTCCTCCGTGCGCAAGTTTCTGAGGGCGTCCGCATCAAAGCCAAGCTTC
CACAGATCTCCATCGAAGTCCGTCAAGTCCGTGTATTGCAGACACATGCA
GGCGACGTGGTCAACGAACCGCTTGAAGGTATCGTTCCTGGCTACGAAAT
CCGTCTCGCAATTCAGCTCGACCATGGCGCCCCGGTTTCCGCGGATGAGC
ACTCCAATCAGACCATGTGCAGTGGCTCGATCTGCGACCTTGGTGGCCTT
CGACCAGCCGAGGGTCTGGGCCTGCTCGTGCAGCCACTTTTCAGCCAATC
CGACGTCGTTGTTGTGCTTCTCCAGCGCCTTCTTGCAATTGGCGAAGGTG
TATCCGGTTTTCTTCCTCAGCGCCGGCAGGGCACTCTTTCTCAGGCCACC
GGATCCGCCAGAGCCGGCATAAAGCTGCCGC

BO09305.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6412-PA 957 CG6412-RA 85..954 888..19 4325 99.8 Minus
CG6412-PA 957 CG6412-RA 42..81 931..892 200 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:03:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG6412-RA 1526 CG6412-RA 480..1392 931..19 4505 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17499402..17499931 19..548 2650 100 Plus
2L 23513712 2L 17500035..17500284 547..796 1250 100 Plus
2L 23513712 2L 17500491..17500627 795..931 625 97.1 Plus
Blast to na_te.dros performed on 2015-02-10 19:03:36 has no hits.

BO09305.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:07:10 Download gff for BO09305.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6412-PA 42..957 15..931 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:09:38 Download gff for BO09305.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6412-PA 42..957 15..931 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:55:44 Download gff for BO09305.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6412-RA 480..1397 12..931 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:36 Download gff for BO09305.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6412-RA 480..1397 12..931 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:36 Download gff for BO09305.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 17499397..17499929 12..546 99 <- Plus
2L 17500035..17500283 547..795 100 <- Plus
2L 17500492..17500627 796..931 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:55:44 Download gff for BO09305.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17499397..17499929 12..546 99 <- Plus
arm_2L 17500035..17500283 547..795 100 <- Plus
arm_2L 17500492..17500627 796..931 97   Plus

BO09305.5prime Sequence

842 bp (833 high quality bases) assembled on 2006-01-18

> BO09305.5prime
GAAGTTATCAGTCGACATGCTGCTACAAAGGTTTTTCACACGCGCACTTC
ACTCCACGCGGCAGCTTTATGCCGGCTCTGGCGGATCCGGTGGCCTGGAG
AAGAGTGCCCTGGCGGCGCTGAGGAAGAAAACCGGATACACCTTCGCCAA
TTGCAAGAAGGCGCTGGAGAAGCACAACAACGACGTCGGATTGGCTGAAA
AGTGGCTGCACGAGCAGGCCCAGACCCTCGGCTGGTCGAAGGCCACCAAG
GTCGCAGATCGAGCCACTGCACATGGTCTGATTGGAGTGCTCATCCGCGG
AAACCGGGGCGCCATGGTCGAGCTGAATTGCGAGACGGATTTCGTAGCCA
GGAACGATACCTTCAAGCGGTTCGTTGACCACGTCGCCTGCATGTGTCTG
CAATACACGGACTTGACGGACTTCGATGGAGATCTGTGGAAGCTTGGCTT
TGATGCGGACGCCCTCAGAAACTTGCGCACGGAGGAGGGACGCACGTTGG
GCGACCACCTGGCTCTGCTGATCGGCGCCATCGGGGAGAATGCCACCATC
CGGCGCGCATTGTGCTTTAAGGCTAACAACGACCTGAAGCTGGTGGGCTA
CGCCCATCCCGCACCCACCAATGTGGGCACCACGGAAGGCATCACCCAGG
TGGGCAAGTACGGAGCGATCGTAGCCTACCGATCCACGCACCCCCTGCTG
GACTTTGAGTTTCACAAGAGCATTTGCCAGCAAATCGTGGGCATGAAGCC
GACAAAGATCGGCGAATATGACAAGGACAAGCCGGCGGAGAACAAGGACG
ATGAGACGTGCCTGATTCACCAGGAGTATCTGCTCGATGCGG

BO09305.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6412-PA 957 CG6412-RA 1..826 17..842 4130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6412-RA 1526 CG6412-RA 439..1264 17..842 4130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:20:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17499530..17499931 842..441 2010 100 Minus
2L 23513712 2L 17500035..17500284 442..193 1250 100 Minus
2L 23513712 2L 17500491..17500668 194..17 890 100 Minus
Blast to na_te.dros performed on 2015-02-11 12:20:30 has no hits.

BO09305.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:07:11 Download gff for BO09305.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6412-PA 1..826 17..842 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:09:39 Download gff for BO09305.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6412-PA 1..826 17..842 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:23:44 Download gff for BO09305.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6412-RA 439..1264 17..842 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:27:40 Download gff for BO09305.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6412-RA 439..1264 17..842 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:27:40 Download gff for BO09305.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 17499530..17499929 443..842 100 <- Minus
2L 17500035..17500283 194..442 100 <- Minus
2L 17500492..17500668 17..193 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:23:44 Download gff for BO09305.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17499530..17499929 443..842 100 <- Minus
arm_2L 17500035..17500283 194..442 100 <- Minus
arm_2L 17500492..17500668 17..193 100   Minus

BO09305.complete Sequence

988 bp (988 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631470

> BO09305.complete
GAAGTTATCAGTCGACATGCTGCTACAAAGGTTTTTCACACGCGCACTTC
ACTCCACGCGGCAGCTTTATGCCGGCTCTGGCGGATCCGGTGGCCTGGAG
AAGAGTGCCCTGGCGGCGCTGAGGAAGAAAACCGGATACACCTTCGCCAA
TTGCAAGAAGGCGCTGGAGAAGCACAACAACGACGTCGGATTGGCTGAAA
AGTGGCTGCACGAGCAGGCCCAGACCCTCGGCTGGTCGAAGGCCACCAAG
GTCGCAGATCGAGCCACTGCACATGGTCTGATTGGAGTGCTCATCCGCGG
AAACCGGGGCGCCATGGTCGAGCTGAATTGCGAGACGGATTTCGTAGCCA
GGAACGATACCTTCAAGCGGTTCGTTGACCACGTCGCCTGCATGTGTCTG
CAATACACGGACTTGACGGACTTCGATGGAGATCTGTGGAAGCTTGGCTT
TGATGCGGACGCCCTCAGAAACTTGCGCACGGAGGAGGGACGCACGTTGG
GCGACCACCTGGCTCTGCTGATCGGCGCCATCGGGGAGAATGCCACCATC
CGGCGCGCATTGTGCTTTAAGGCTAACAACGACCTGAAGCTGGTGGGCTA
CGCCCATCCCGCACCCACCAATGTGGGCACCACGGAAGGCATCACCCAGG
TGGGCAAGTACGGAGCGATCGTAGCCTACCGATCCACGCACCCCCTGCTG
GACTTTGAGTTTCACAAGAGCATTTGCCAGCAAATCGTGGGCATGAAGCC
GACAAAGATCGGCGAATATGACAAGGACAAGCCGGCGGAGAACAAGGACG
ATGAGACGTGCCTGATTCACCAGGAGTATCTGCTCGATGCGGACAAGACG
GTGGGCGAGGCTTTGCAGGAGCACAACTGCGAGATCGTCGACTACCATCG
CTTCGAGTGCGGAGAGCACACGGAACGCAGCCTGGAGGCGATCATTCGCT
CGCAGCACCAGAGCAGCAATGCAAGCTTTCTAGACCAT

BO09305.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG6412-RA 957 CG6412-PA 1..954 17..970 4770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG6412-RA 1526 CG6412-RA 439..1392 17..970 4770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17499402..17499931 970..441 2650 100 Minus
2L 23513712 2L 17500035..17500284 442..193 1250 100 Minus
2L 23513712 2L 17500491..17500668 194..17 890 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:53:34 has no hits.

BO09305.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:11 Download gff for BO09305.complete
Subject Subject Range Query Range Percent Splice Strand
CG6412-RA 1..957 17..974 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:04 Download gff for BO09305.complete
Subject Subject Range Query Range Percent Splice Strand
CG6412-RA 442..1400 17..977 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:27 Download gff for BO09305.complete
Subject Subject Range Query Range Percent Splice Strand
CG6412-RA 439..1392 17..972 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:11 Download gff for BO09305.complete
Subject Subject Range Query Range Percent Splice Strand
CG6412-RA 442..1400 17..977 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:03 Download gff for BO09305.complete
Subject Subject Range Query Range Percent Splice Strand
CG6412-RA 439..1392 17..972 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:03 Download gff for BO09305.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17499400..17499929 443..972 99 <- Minus
2L 17500035..17500283 194..442 100 <- Minus
2L 17500492..17500668 17..193 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:27 Download gff for BO09305.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17499400..17499929 443..972 99 <- Minus
arm_2L 17500035..17500283 194..442 100 <- Minus
arm_2L 17500492..17500668 17..193 100   Minus

BO09305.pep Sequence

Translation from 16 to 988

> BO09305.pep
MLLQRFFTRALHSTRQLYAGSGGSGGLEKSALAALRKKTGYTFANCKKAL
EKHNNDVGLAEKWLHEQAQTLGWSKATKVADRATAHGLIGVLIRGNRGAM
VELNCETDFVARNDTFKRFVDHVACMCLQYTDLTDFDGDLWKLGFDADAL
RNLRTEEGRTLGDHLALLIGAIGENATIRRALCFKANNDLKLVGYAHPAP
TNVGTTEGITQVGKYGAIVAYRSTHPLLDFEFHKSICQQIVGMKPTKIGE
YDKDKPAENKDDETCLIHQEYLLDADKTVGEALQEHNCEIVDYHRFECGE
HTERSLEAIIRSQHQSSNASFLDH

BO09305.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG6412-PA 318 CG6412-PA 1..318 1..318 1684 100 Plus