Clone Sequence Records
BO09305.3prime Sequence
931 bp (844 high quality bases) assembled on 2006-01-18
> BO09305.3prime
ATGGTCTAGAAAGCTTGCATTGCTGCTCTGGTGCTGCGAGCGAATGATCG
CCTCCAGGCTGCGTTCCGTGTGCTCTCCGCACTCGAAGCGATGGTAGTCG
ACGATCTCGCAGTTGTGCTCCTGCAAAGCCTCGCCCACCGTCTTGTCCGC
ATCGAGCAGATACTCCTGGTGAATCAGGCACGTCTCATCGTCCTTGTTCT
CCGCCGGCTTGTCCTTGTCATATTCGCCGATCTTTGTCGGCTTCATGCCC
ACGATTTGCTGGCAAATGCTCTTGTGAAACTCAAAGTCCAGCAGGGGGTG
CGTGGATCGGTAGGCTACGATCGCTCCGTACTTGCCCACCTGGGTGATGC
CTTCCGTGGTGCCCACATTGGTGGGTGCGGGATGGGCGTAGCCCACCAGC
TTCAGGTCGTTGTTAGCCTTAAAGCACAATGCGCGCCGGATGGTGGCATT
CTCCCCGATGGCGCCGATCAGCAGAGCCAGGTGGTCGCCCAACGTGCGTC
CCTCCTCCGTGCGCAAGTTTCTGAGGGCGTCCGCATCAAAGCCAAGCTTC
CACAGATCTCCATCGAAGTCCGTCAAGTCCGTGTATTGCAGACACATGCA
GGCGACGTGGTCAACGAACCGCTTGAAGGTATCGTTCCTGGCTACGAAAT
CCGTCTCGCAATTCAGCTCGACCATGGCGCCCCGGTTTCCGCGGATGAGC
ACTCCAATCAGACCATGTGCAGTGGCTCGATCTGCGACCTTGGTGGCCTT
CGACCAGCCGAGGGTCTGGGCCTGCTCGTGCAGCCACTTTTCAGCCAATC
CGACGTCGTTGTTGTGCTTCTCCAGCGCCTTCTTGCAATTGGCGAAGGTG
TATCCGGTTTTCTTCCTCAGCGCCGGCAGGGCACTCTTTCTCAGGCCACC
GGATCCGCCAGAGCCGGCATAAAGCTGCCGC
BO09305.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6412-PA | 957 | CG6412-RA | 85..954 | 888..19 | 4325 | 99.8 | Minus |
CG6412-PA | 957 | CG6412-RA | 42..81 | 931..892 | 200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:03:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6412-RA | 1526 | CG6412-RA | 480..1392 | 931..19 | 4505 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:03:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17499402..17499931 | 19..548 | 2650 | 100 | Plus |
2L | 23513712 | 2L | 17500035..17500284 | 547..796 | 1250 | 100 | Plus |
2L | 23513712 | 2L | 17500491..17500627 | 795..931 | 625 | 97.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:03:36 has no hits.
BO09305.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:07:10 Download gff for
BO09305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6412-PA | 42..957 | 15..931 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:09:38 Download gff for
BO09305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6412-PA | 42..957 | 15..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:55:44 Download gff for
BO09305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6412-RA | 480..1397 | 12..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:36 Download gff for
BO09305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6412-RA | 480..1397 | 12..931 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:36 Download gff for
BO09305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17499397..17499929 | 12..546 | 99 | <- | Plus |
2L | 17500035..17500283 | 547..795 | 100 | <- | Plus |
2L | 17500492..17500627 | 796..931 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:55:44 Download gff for
BO09305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17499397..17499929 | 12..546 | 99 | <- | Plus |
arm_2L | 17500035..17500283 | 547..795 | 100 | <- | Plus |
arm_2L | 17500492..17500627 | 796..931 | 97 | | Plus |
BO09305.5prime Sequence
842 bp (833 high quality bases) assembled on 2006-01-18
> BO09305.5prime
GAAGTTATCAGTCGACATGCTGCTACAAAGGTTTTTCACACGCGCACTTC
ACTCCACGCGGCAGCTTTATGCCGGCTCTGGCGGATCCGGTGGCCTGGAG
AAGAGTGCCCTGGCGGCGCTGAGGAAGAAAACCGGATACACCTTCGCCAA
TTGCAAGAAGGCGCTGGAGAAGCACAACAACGACGTCGGATTGGCTGAAA
AGTGGCTGCACGAGCAGGCCCAGACCCTCGGCTGGTCGAAGGCCACCAAG
GTCGCAGATCGAGCCACTGCACATGGTCTGATTGGAGTGCTCATCCGCGG
AAACCGGGGCGCCATGGTCGAGCTGAATTGCGAGACGGATTTCGTAGCCA
GGAACGATACCTTCAAGCGGTTCGTTGACCACGTCGCCTGCATGTGTCTG
CAATACACGGACTTGACGGACTTCGATGGAGATCTGTGGAAGCTTGGCTT
TGATGCGGACGCCCTCAGAAACTTGCGCACGGAGGAGGGACGCACGTTGG
GCGACCACCTGGCTCTGCTGATCGGCGCCATCGGGGAGAATGCCACCATC
CGGCGCGCATTGTGCTTTAAGGCTAACAACGACCTGAAGCTGGTGGGCTA
CGCCCATCCCGCACCCACCAATGTGGGCACCACGGAAGGCATCACCCAGG
TGGGCAAGTACGGAGCGATCGTAGCCTACCGATCCACGCACCCCCTGCTG
GACTTTGAGTTTCACAAGAGCATTTGCCAGCAAATCGTGGGCATGAAGCC
GACAAAGATCGGCGAATATGACAAGGACAAGCCGGCGGAGAACAAGGACG
ATGAGACGTGCCTGATTCACCAGGAGTATCTGCTCGATGCGG
BO09305.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6412-PA | 957 | CG6412-RA | 1..826 | 17..842 | 4130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:20:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6412-RA | 1526 | CG6412-RA | 439..1264 | 17..842 | 4130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:20:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17499530..17499931 | 842..441 | 2010 | 100 | Minus |
2L | 23513712 | 2L | 17500035..17500284 | 442..193 | 1250 | 100 | Minus |
2L | 23513712 | 2L | 17500491..17500668 | 194..17 | 890 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:20:30 has no hits.
BO09305.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:07:11 Download gff for
BO09305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6412-PA | 1..826 | 17..842 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:09:39 Download gff for
BO09305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6412-PA | 1..826 | 17..842 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:23:44 Download gff for
BO09305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6412-RA | 439..1264 | 17..842 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:27:40 Download gff for
BO09305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6412-RA | 439..1264 | 17..842 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:27:40 Download gff for
BO09305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17499530..17499929 | 443..842 | 100 | <- | Minus |
2L | 17500035..17500283 | 194..442 | 100 | <- | Minus |
2L | 17500492..17500668 | 17..193 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:23:44 Download gff for
BO09305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17499530..17499929 | 443..842 | 100 | <- | Minus |
arm_2L | 17500035..17500283 | 194..442 | 100 | <- | Minus |
arm_2L | 17500492..17500668 | 17..193 | 100 | | Minus |
BO09305.complete Sequence
988 bp (988 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631470
> BO09305.complete
GAAGTTATCAGTCGACATGCTGCTACAAAGGTTTTTCACACGCGCACTTC
ACTCCACGCGGCAGCTTTATGCCGGCTCTGGCGGATCCGGTGGCCTGGAG
AAGAGTGCCCTGGCGGCGCTGAGGAAGAAAACCGGATACACCTTCGCCAA
TTGCAAGAAGGCGCTGGAGAAGCACAACAACGACGTCGGATTGGCTGAAA
AGTGGCTGCACGAGCAGGCCCAGACCCTCGGCTGGTCGAAGGCCACCAAG
GTCGCAGATCGAGCCACTGCACATGGTCTGATTGGAGTGCTCATCCGCGG
AAACCGGGGCGCCATGGTCGAGCTGAATTGCGAGACGGATTTCGTAGCCA
GGAACGATACCTTCAAGCGGTTCGTTGACCACGTCGCCTGCATGTGTCTG
CAATACACGGACTTGACGGACTTCGATGGAGATCTGTGGAAGCTTGGCTT
TGATGCGGACGCCCTCAGAAACTTGCGCACGGAGGAGGGACGCACGTTGG
GCGACCACCTGGCTCTGCTGATCGGCGCCATCGGGGAGAATGCCACCATC
CGGCGCGCATTGTGCTTTAAGGCTAACAACGACCTGAAGCTGGTGGGCTA
CGCCCATCCCGCACCCACCAATGTGGGCACCACGGAAGGCATCACCCAGG
TGGGCAAGTACGGAGCGATCGTAGCCTACCGATCCACGCACCCCCTGCTG
GACTTTGAGTTTCACAAGAGCATTTGCCAGCAAATCGTGGGCATGAAGCC
GACAAAGATCGGCGAATATGACAAGGACAAGCCGGCGGAGAACAAGGACG
ATGAGACGTGCCTGATTCACCAGGAGTATCTGCTCGATGCGGACAAGACG
GTGGGCGAGGCTTTGCAGGAGCACAACTGCGAGATCGTCGACTACCATCG
CTTCGAGTGCGGAGAGCACACGGAACGCAGCCTGGAGGCGATCATTCGCT
CGCAGCACCAGAGCAGCAATGCAAGCTTTCTAGACCAT
BO09305.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:53:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6412-RA | 957 | CG6412-PA | 1..954 | 17..970 | 4770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6412-RA | 1526 | CG6412-RA | 439..1392 | 17..970 | 4770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17499402..17499931 | 970..441 | 2650 | 100 | Minus |
2L | 23513712 | 2L | 17500035..17500284 | 442..193 | 1250 | 100 | Minus |
2L | 23513712 | 2L | 17500491..17500668 | 194..17 | 890 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:53:34 has no hits.
BO09305.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:11 Download gff for
BO09305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6412-RA | 1..957 | 17..974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:04 Download gff for
BO09305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6412-RA | 442..1400 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:27 Download gff for
BO09305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6412-RA | 439..1392 | 17..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:11 Download gff for
BO09305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6412-RA | 442..1400 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:03 Download gff for
BO09305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6412-RA | 439..1392 | 17..972 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:03 Download gff for
BO09305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17499400..17499929 | 443..972 | 99 | <- | Minus |
2L | 17500035..17500283 | 194..442 | 100 | <- | Minus |
2L | 17500492..17500668 | 17..193 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:27 Download gff for
BO09305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17499400..17499929 | 443..972 | 99 | <- | Minus |
arm_2L | 17500035..17500283 | 194..442 | 100 | <- | Minus |
arm_2L | 17500492..17500668 | 17..193 | 100 | | Minus |
BO09305.pep Sequence
Translation from 16 to 988
> BO09305.pep
MLLQRFFTRALHSTRQLYAGSGGSGGLEKSALAALRKKTGYTFANCKKAL
EKHNNDVGLAEKWLHEQAQTLGWSKATKVADRATAHGLIGVLIRGNRGAM
VELNCETDFVARNDTFKRFVDHVACMCLQYTDLTDFDGDLWKLGFDADAL
RNLRTEEGRTLGDHLALLIGAIGENATIRRALCFKANNDLKLVGYAHPAP
TNVGTTEGITQVGKYGAIVAYRSTHPLLDFEFHKSICQQIVGMKPTKIGE
YDKDKPAENKDDETCLIHQEYLLDADKTVGEALQEHNCEIVDYHRFECGE
HTERSLEAIIRSQHQSSNASFLDH
BO09305.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6412-PA | 318 | CG6412-PA | 1..318 | 1..318 | 1684 | 100 | Plus |