Clone Sequence Records
BO09318.3prime Sequence
915 bp (800 high quality bases) assembled on 2006-01-18
> BO09318.3prime
ATGGTCTAGAAAGCTTGCCGCATTGTGATGCGGTGGGATGACCACCCAGC
CTTCTTCCACGGACTCAGAGCCTCCGCACACCGATCCGGGCAGCAGTCCA
CAGCCCTCATCCTGCAGGAAATGCATAGGCGGATGTGAGTGTGGATGCTG
AAGCTGATTTGGATGCGGATGAGGATGAGGTTGCGGATGATGGCCGGCCG
CAAGTTGGCGTGAAGCGTACTGCTGCTGCAGATTGTTGTAAAGACTCTGA
AGACCCTCCTTGTCCTTCATCTTGCGCAGAAGCTCCTGCTTCTGTTCGCG
CTCGGTTCGGTCCATCTGCACGATGAGCTTGTCCTTGAAGTCCTGCGCGT
AGTAGAGGTTCGTGTCGACGCTCAGGTACTCCTTGGCCATGTGTCGGTGG
TCCCGGTAGATGAGCTGCGATTCGGCATCGTTGGGTATCGGCGGCTCTGG
CTGGAGCTCCGGATCAAGAATCTCGGCCAGTGACTGTTCGGTGCCGTCGT
TCTCATCCTCGTCGGGATCCACGTCGACGTCCAACGAGTTGACAATCTCC
TGCTCATGCTCTTGCTCCTGCAGCTCCTCATCTCTTGCTTGCCAACCATT
CGCATGGCTCAGCAGTCCGTTCGAGTGGGCGTGGATGCCGCCGTTGTTGT
TGGACAGATCCGTGGTCATCATCACCGGCTTGGTGTCCGTCACCGTGAGT
CGTTCGCGGCCATCGCTCTTTGCGTTCGTGCTGCTGCTGCTGCTTTCGCT
GGGACTCAGATCAAAGCCATTCGCCTCCACGTCGAGGGTGAGCTGCTCCA
TGGGCTTGCAGGCCATCAGGATCATGCCGTTCCGGATCGTTTCGAGGCGC
TGAGTGGCCTCAGCCGACGAGGTGAGGTTGAAGCTATCGTTCCGGCTCTC
GTTGCTCTCCTCCTC
BO09318.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18492-PA | 2037 | Tak1-RA | 1138..2034 | 915..19 | 4485 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:15:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tak1-RA | 3391 | CG18492-RA | 2099..2995 | 915..19 | 4485 | 100 | Minus |
| Tak1-RB | 1650 | CG18492-RB | 551..1254 | 722..19 | 3520 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:15:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20516658..20517123 | 258..723 | 2330 | 100 | Plus |
| X | 23542271 | X | 20516304..20516545 | 19..260 | 1210 | 100 | Plus |
| X | 23542271 | X | 20521628..20521771 | 772..915 | 720 | 100 | Plus |
| X | 23542271 | X | 20521224..20521273 | 723..772 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:15:32 has no hits.
BO09318.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:07:27 Download gff for
BO09318.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tak1-PA | 1138..2037 | 18..915 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:10:02 Download gff for
BO09318.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18492-PA | 1138..2037 | 18..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:35:35 Download gff for
BO09318.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tak1-RA | 2099..2995 | 19..915 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:07:20 Download gff for
BO09318.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tak1-RA | 2099..2995 | 19..915 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:07:20 Download gff for
BO09318.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20516304..20516543 | 19..258 | 100 | <- | Plus |
| X | 20516659..20517122 | 259..722 | 100 | <- | Plus |
| X | 20521224..20521272 | 723..771 | 100 | <- | Plus |
| X | 20521628..20521771 | 772..915 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:35:35 Download gff for
BO09318.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20387331..20387570 | 19..258 | 100 | <- | Plus |
| arm_X | 20387686..20388149 | 259..722 | 100 | <- | Plus |
| arm_X | 20392251..20392299 | 723..771 | 100 | <- | Plus |
| arm_X | 20392655..20392798 | 772..915 | 100 | | Plus |
BO09318.5prime Sequence
961 bp (804 high quality bases) assembled on 2006-01-18
> BO09318.5prime
GAAGTTATCAGTCGACATGGCCACAGCATCGCTGGACGCACTGCAGGCAG
CCTATGTGGACTTCAGTGAGATAACACTAAGAGAGAAAGTCGGCCATGGG
TCCTACGGAGTGGTCTGCAAGGCCGTTTGGCGCGACAAGCTGGTTGCCGT
CAAGGAGTTCTTCGCCAGCGCCGAGCAGAAGGACATCGAGAAGGAGGTGA
AGCAGTTGTCGCGCGTGAAGCACCCGAACATCATCGCTCTGCACGGGATA
TCCTCGTACCAGCAGGCCACCTACCTGATAATGGAGTTCGCCGAAGGTGG
ATCGCTGCACAACTTCCTTCACGGCAAGGTGAAGCCGGCATATTCTCTGG
CCCACGCCATGAGCTGGGCGCGCCAATGTGCAGAGGGTCTGGCATATTTG
CATGCCATGACGCCAAAACCACTAATACATCGCGACGTGAAGCCGCTGAA
CCTGCTCTTGACCAACAAGGGACGCAATCTGAAGATATGCGACTTCGGCA
CGGTGGCGGACAAGTCGACCATGATGACCAACAATCGCGGCAGTGCCGCT
TGGATGGCGCCCGAGGTCTTCGAAGGCTCCAAGTATACGGAGAAGTGTGA
CATTTTTAGCTGGGCCATTGTTCTATGGGAGGTTCTGTCCAGGAAGCAGC
CCTTTAAAGGCATCGACAATGCCTACACCATCCAGTGGAAGATCTACAAG
GGTGAACGCCCGCCGCTGCTGACCACTTGCCCCAAGCGCATCGAGGACCT
GATGACCGCCTGCTGGAAAACGGTGCCCGAGGATCGCCCGTCGATGCAGT
ACATAGTGGGCGTTATGCACGAGATCGTCAAGGACTATACGGGGGCGGAC
AAGGCCCTGNAATACACGTTTGTTTATCAACAGATTGTCACAAAAGAGAG
CGACGGCACGGTGGCCGCTCAACGGATAGCCCTCATTCGCAGGAGGGGGG
ACTGAGCCCCT
BO09318.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18492-PA | 2037 | Tak1-RA | 1..907 | 17..923 | 4466 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:26:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tak1-RA | 3391 | CG18492-RA | 962..1907 | 17..961 | 4604 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:25:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20522502..20522822 | 704..384 | 1605 | 100 | Minus |
| X | 23542271 | X | 20523058..20523360 | 386..84 | 1515 | 100 | Minus |
| X | 23542271 | X | 20522264..20522446 | 883..701 | 889 | 98.9 | Minus |
| X | 23542271 | X | 20523899..20523967 | 85..17 | 345 | 100 | Minus |
| X | 23542271 | X | 20521963..20522044 | 961..881 | 270 | 91.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:25:56 has no hits.
BO09318.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:07:28 Download gff for
BO09318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tak1-PA | 1..946 | 17..961 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:10:04 Download gff for
BO09318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18492-PA | 1..946 | 17..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:24:37 Download gff for
BO09318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tak1-RA | 959..1907 | 14..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:59 Download gff for
BO09318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tak1-RA | 959..1907 | 14..961 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:59 Download gff for
BO09318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20521963..20522041 | 884..961 | 93 | <- | Minus |
| X | 20522264..20522445 | 702..883 | 98 | <- | Minus |
| X | 20522505..20522820 | 386..701 | 100 | <- | Minus |
| X | 20523059..20523358 | 86..385 | 100 | <- | Minus |
| X | 20523899..20523970 | 14..85 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:24:37 Download gff for
BO09318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20392990..20393068 | 884..961 | 93 | <- | Minus |
| arm_X | 20393291..20393472 | 702..883 | 98 | <- | Minus |
| arm_X | 20393532..20393847 | 386..701 | 100 | <- | Minus |
| arm_X | 20394086..20394385 | 86..385 | 100 | <- | Minus |
| arm_X | 20394926..20394997 | 14..85 | 98 | | Minus |
BO09318.complete Sequence
2068 bp (2068 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631471
> BO09318.complete
GAAGTTATCAGTCGACATGGCCACAGCATCGCTGGACGCACTGCAGGCAG
CCTATGTGGACTTCAGTGAGATAACACTAAGAGAGAAAGTCGGCCATGGG
TCCTACGGAGTGGTCTGCAAGGCCGTTTGGCGCGACAAGCTGGTTGCCGT
CAAGGAGTTCTTCGCCAGCGCCGAGCAGAAGGACATCGAGAAGGAGGTGA
AGCAGTTGTCGCGCGTGAAGCACCCGAACATCATCGCTCTGCACGGGATA
TCCTCGTACCAGCAGGCCACCTACCTGATAATGGAGTTCGCCGAAGGTGG
ATCGCTGCACAACTTCCTTCACGGCAAGGTGAAGCCGGCATATTCTCTGG
CCCACGCCATGAGCTGGGCGCGCCAATGTGCAGAGGGTCTGGCATATTTG
CATGCCATGACGCCAAAACCACTAATACATCGCGACGTGAAGCCGCTGAA
CCTGCTCTTGACCAACAAGGGACGCAATCTGAAGATATGCGACTTCGGCA
CGGTGGCGGACAAGTCGACCATGATGACCAACAATCGCGGCAGTGCCGCT
TGGATGGCGCCCGAGGTCTTCGAAGGCTCCAAGTATACGGAGAAGTGTGA
CATTTTTAGCTGGGCCATTGTTCTATGGGAGGTTCTGTCCAGGAAGCAGC
CCTTTAAAGGCATCGACAATGCCTACACCATCCAGTGGAAGATCTACAAG
GGTGAACGCCCGCCGCTGCTGACCACTTGCCCCAAGCGCATCGAGGACCT
GATGACCGCCTGCTGGAAAACGGTGCCCGAGGATCGCCCGTCGATGCAGT
ACATAGTGGGCGTTATGCACGAGATCGTCAAGGACTATACGGGGGCGGAC
AAGGCCCTGGAATACACGTTTGTTAATCAACAGATTGTCACCAAAGAGAG
CGACGGCACGGTGGCCGCTCAACCGGATAGCCTCAGTTCGCAGGAGGGGG
AACTGAGCCCCTCGTCCACACAGTTAACACCGACAACGGCGGCCAACGCC
AATGTGAACGCGATAGCAATATCAAAAACAACGACTAGCTCAATGACCGA
AAATACCTCATCAACATCATCGGACATCACGCCGACGAACTCGGGCCAAC
TGGACAATAATCCGCTATTCTATATGGTCACCAATCGCTGGGACGCGATT
CCCGAGGAGGAGAGCAACGAGAGCCGGAACGATAGCTTCAACCTCACCTC
GTCGGCTGAGGCCACTCAGCGCCTCGAAACGATCCGGAACGGCATGATCC
TGATGGCCTGCAAGCCCATGGAGCAGCTCACCCTCGACGTGGAGGCGAAT
GGCTTTGATCTGAGTCCCAGCGAAAGCAGCAGCAGCAGCACGAACGCAAA
GAGCGATGGCCGCGAACGACTCACGGTGACGGACACCAAGCCGGTGATGA
TGACCACGGATCTGTCCAACAACAACGGCGGCATCCACGCCCACTCGAAC
GGACTGCTGAGCCATGCGAATGGTTGGCAAGCAAGAGATGAGGAGCTGCA
GGAGCAAGAGCATGAGCAGGAGATTGTCAACTCGTTGGACGTCGACGTGG
ATCCCGACGAGGATGAGAACGACGGCACCGAACAGTCACTGGCCGAGATT
CTTGATCCGGAGCTCCAGCCAGAGCCGCCGATACCCAACGATGCCGAATC
GCAGCTCATCTACCGGGACCACCGACACATGGCCAAGGAGTACCTGAGCG
TCGACACGAACCTCTACTACGCGCAGGACTTCAAGGACAAGCTCATCGTG
CAGATGGACCGAACCGAGCGCGAACAGAAGCAGGAGCTTCTGCGCAAGAT
GAAGGACAAGGAGGGTCTTCAGAGTCTTTACAACAATCTGCAGCAGCAGT
ACGCTTCACGCCAACTTGCGGCCGGCCATCATCCGCAACCTCATCCTCAT
CCGCATCCAAATCAGCTTCAGCATCCACACTCACATCCGCCTATGCATTT
CCTGCAGGATGAGGGCTGTGGACTGCTGCCCGGATCGGTGTGCGGAGGCT
CTGAGTCCGTGGAAGAAGGCTGGGTGGTCATCCCACCGCATCACAATGCG
GCAAGCTTTCTAGACCAT
BO09318.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:04:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tak1-RA | 2037 | CG18492-PA | 1..2034 | 17..2050 | 10170 | 100 | Plus |
| Tak1-RB | 777 | CG18492-PB | 71..774 | 1347..2050 | 3520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tak1-RA | 3391 | CG18492-RA | 962..2995 | 17..2050 | 10170 | 100 | Plus |
| Tak1-RB | 1650 | CG18492-RB | 551..1254 | 1347..2050 | 3520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20516658..20517123 | 1811..1346 | 2330 | 100 | Minus |
| X | 23542271 | X | 20521628..20522044 | 1297..881 | 2085 | 100 | Minus |
| X | 23542271 | X | 20522502..20522822 | 704..384 | 1605 | 100 | Minus |
| X | 23542271 | X | 20523058..20523360 | 386..84 | 1515 | 100 | Minus |
| X | 23542271 | X | 20516304..20516545 | 2050..1809 | 1210 | 100 | Minus |
| X | 23542271 | X | 20522264..20522446 | 883..701 | 915 | 100 | Minus |
| X | 23542271 | X | 20523899..20523967 | 85..17 | 345 | 100 | Minus |
| X | 23542271 | X | 20521224..20521273 | 1346..1297 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:04:34 has no hits.
BO09318.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:19 Download gff for
BO09318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tak1-RA | 1..2037 | 17..2051 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:18 Download gff for
BO09318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tak1-RA | 957..2993 | 14..2050 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:18 Download gff for
BO09318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tak1-RA | 962..2995 | 17..2052 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:19 Download gff for
BO09318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tak1-RA | 957..2993 | 14..2050 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:55 Download gff for
BO09318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tak1-RA | 962..2995 | 17..2052 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:55 Download gff for
BO09318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20523059..20523358 | 86..385 | 100 | <- | Minus |
| X | 20523899..20523967 | 17..85 | 100 | | Minus |
| X | 20522264..20522445 | 702..883 | 100 | <- | Minus |
| X | 20522505..20522820 | 386..701 | 100 | <- | Minus |
| X | 20516302..20516543 | 1811..2052 | 99 | <- | Minus |
| X | 20516659..20517122 | 1347..1810 | 100 | <- | Minus |
| X | 20521224..20521272 | 1298..1346 | 100 | <- | Minus |
| X | 20521628..20522041 | 884..1297 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:18 Download gff for
BO09318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20393291..20393472 | 702..883 | 100 | <- | Minus |
| arm_X | 20387329..20387570 | 1811..2052 | 99 | <- | Minus |
| arm_X | 20387686..20388149 | 1347..1810 | 100 | <- | Minus |
| arm_X | 20392251..20392299 | 1298..1346 | 100 | <- | Minus |
| arm_X | 20392655..20393068 | 884..1297 | 100 | <- | Minus |
| arm_X | 20393532..20393847 | 386..701 | 100 | <- | Minus |
| arm_X | 20394086..20394385 | 86..385 | 100 | <- | Minus |
| arm_X | 20394926..20394994 | 17..85 | 100 | | Minus |
BO09318.pep Sequence
Translation from 16 to 2068
> BO09318.pep
MATASLDALQAAYVDFSEITLREKVGHGSYGVVCKAVWRDKLVAVKEFFA
SAEQKDIEKEVKQLSRVKHPNIIALHGISSYQQATYLIMEFAEGGSLHNF
LHGKVKPAYSLAHAMSWARQCAEGLAYLHAMTPKPLIHRDVKPLNLLLTN
KGRNLKICDFGTVADKSTMMTNNRGSAAWMAPEVFEGSKYTEKCDIFSWA
IVLWEVLSRKQPFKGIDNAYTIQWKIYKGERPPLLTTCPKRIEDLMTACW
KTVPEDRPSMQYIVGVMHEIVKDYTGADKALEYTFVNQQIVTKESDGTVA
AQPDSLSSQEGELSPSSTQLTPTTAANANVNAIAISKTTTSSMTENTSST
SSDITPTNSGQLDNNPLFYMVTNRWDAIPEEESNESRNDSFNLTSSAEAT
QRLETIRNGMILMACKPMEQLTLDVEANGFDLSPSESSSSSTNAKSDGRE
RLTVTDTKPVMMTTDLSNNNGGIHAHSNGLLSHANGWQARDEELQEQEHE
QEIVNSLDVDVDPDEDENDGTEQSLAEILDPELQPEPPIPNDAESQLIYR
DHRHMAKEYLSVDTNLYYAQDFKDKLIVQMDRTEREQKQELLRKMKDKEG
LQSLYNNLQQQYASRQLAAGHHPQPHPHPHPNQLQHPHSHPPMHFLQDEG
CGLLPGSVCGGSESVEEGWVVIPPHHNAASFLDH
BO09318.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:00:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tak1-PA | 678 | CG18492-PA | 1..678 | 1..678 | 3571 | 100 | Plus |
| Tak1-PB | 258 | CG18492-PB | 25..258 | 445..678 | 1271 | 100 | Plus |
| Takl2-PB | 281 | CG4803-PB | 8..270 | 14..273 | 644 | 47.1 | Plus |
| Takl1-PA | 393 | CG31421-PA | 5..277 | 14..278 | 544 | 41.6 | Plus |
| slpr-PD | 1148 | CG2272-PD | 113..389 | 3..270 | 365 | 30.5 | Plus |
