Clone BO09320 Report

Search the DGRC for BO09320

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:93
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG6461-RA
Protein status:BO09320.pep: validated full length
Sequenced Size:1771

Clone Sequence Records

BO09320.3prime Sequence

889 bp (815 high quality bases) assembled on 2006-01-18

> BO09320.3prime
ATGGTCTAGAAAGCTTGCATGCTGCATCTTGTTGGTTTTGGCCAGAGTGA
GGGCGCTGCCGATGCGACGGCGATCATAGAATGGCTCCGGCTGCTCCAGC
GCCCCAATGGCGGTCACTGCTGCAAAGCTGGAGCCGACGGGCTCCTCGTA
CATCTCGTGGCCCACCTGCTTCAGGTAGTCGGTAACGCTGCTGTCCACCT
CCTGCTCATAGCTCACGCGCATGGGAGCCAACTGATGATGGAGGCGGCCA
TTGTTCACGGCCGCGGTGAGGCTCTCCTTGCGTAGCAGGTACTTCATGAT
CACAGCTGCCACGCTGGTGGTGATGCGAGTGCCACCTGCTGCTCCGACCA
GCAAACGTACATTGCCTTCCTGGTCAACAATAATGCACGGACTCATCGAG
GACATGGGACGCTTGCCGGGATAAATGTAGTTGGCCGGCGAGGCGGGCAC
ACCGAAGCCATTGATCACGCCCGGCGTGGAGAAGTCGTCCATCTCGTCGT
TCAGAATGATTCCCGTCTGGGTGGAAGCCACCTTGGAGCCGAAATAGTTA
TTGATGGTACTGGTGATGGACACGGCGTCTCCATTGGTGGCCAAGACATT
CATGTGGGCGGTGCCATGGTCCTCCTCCACGGTGAAGTTGGCGCCATAGT
AGAGGTAGTCCTCCGAAGTGCTATTGTCGTGGATCAGCTTCCTTACGCTC
TCCAGGAACTCCGGCTTGAGCATCTCCTCCAGGGTGGCATTGATGGACGC
GGCGCTCACGGGATCGGCATACATATCACCCAGATTGGTGCGCTGGCCAT
AGGCGTGTTTAAAGGCCTCCACCACGCGCTGCCAATAGATCGGCTCATTG
TCCGTATAGAGATCGGCCATCAGGTTGAGGATGAAGGCC

BO09320.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6461-PA 1740 CG6461-RA 867..1737 889..19 4355 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
Ggt-1-RB 2212 CG6461-RB 1156..2026 889..19 4355 100 Minus
Ggt-1-RA 2396 CG6461-RA 1340..2210 889..19 4355 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18507476..18507820 545..889 1725 100 Plus
X 23542271 X 18506069..18506353 19..303 1425 100 Plus
X 23542271 X 18506414..18506656 302..544 1215 100 Plus
Blast to na_te.dros performed on 2015-02-03 08:57:39 has no hits.

BO09320.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:07:31 Download gff for BO09320.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6461-PA 867..1740 18..889 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:10:08 Download gff for BO09320.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6461-PA 867..1740 18..889 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:43:03 Download gff for BO09320.3prime
Subject Subject Range Query Range Percent Splice Strand
Ggt-1-RA 1178..2048 19..889 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:57:19 Download gff for BO09320.3prime
Subject Subject Range Query Range Percent Splice Strand
Ggt-1-RA 1340..2210 19..889 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:57:19 Download gff for BO09320.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18506069..18506353 19..303 100 <- Plus
X 18506416..18506656 304..544 100 <- Plus
X 18507476..18507820 545..889 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:43:03 Download gff for BO09320.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18400102..18400386 19..303 100 <- Plus
arm_X 18400449..18400689 304..544 100 <- Plus
arm_X 18401509..18401853 545..889 100   Plus

BO09320.5prime Sequence

950 bp (861 high quality bases) assembled on 2006-01-18

> BO09320.5prime
GAAGTTATCAGTCGACATGAGGATTGTGTGGAGTAAGAAGCTCTTGCTAT
GGCTACTGCTGGCTGCCCTCATGGTGACGGCGTTGACTCTGGGCTTGGTC
TTCGGTCTGAAGAATCGGGACACGCTGTACATCAGCGGAGCCGTGGTGTC
CAATGGCATCGGATGTGCTGCGGTCGGCGGTGAAATGCTGACCGATGGCG
GTTCCGCCGTGGATGCAGCCATTGCTACGCTGCTGTGCGAGGGCCTGCTA
TTGCCGCACTCAATGGGCATTGGCGGTGGCTTCGTGGCCACCATATATAC
GCGAAGTAGCCGCAAGGTGGAGACGGTGATTGCCAGGGAATCGGCACCGG
CGGCCGCGCACAAGGACATGTTCGTGGGCGAGACGTCGATTACGGGCGCC
AAATCGGGTGCGGTGCCCGGCGAGATTCTTGGCTACTGGGAGATGCATCG
TCGCTATGGCATCCTGCCCTGGAAACGCCTCTTCGAGCCGTCCATTAAGC
TGGCCCGCGAGGGTCATGTTGTTTCGCGCTATCTGGCCGCCGCCATCCAA
TCCAAGCTGGATAACATTAAGGCAGATCCCGGGCTCTCGGCCGTGTTCCT
CAACGCAACCGGTGATCCCCACTTGGAGGGCGATTACATGAAGCGTCCCG
CGCTGGCCGACACGCTGGAGCGGATTGCCGAGAATGGAGCCAAGGAGTTC
TACGATGGCGGCGAGACGGGTCGCAAGTTCGTCGAGGATATCCAGAAGAT
GGGCGGCATCATTACGGAGCAGGACCTGCGCGATTACACGGTGCGCTGGG
AGAGCGATGGACACGTGTCGGCCCATGTGAGTGGCACGTACACGCTCTAT
TCCACGCCCATGCCCAGCAGCGGACCCGTTCTGGGCCTCATCCTCAACCT
GATGGGCGATCTCTATACGGACAATGAGCCGATCTATTGGCAGCGCGTGG

BO09320.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6461-PA 1740 CG6461-RA 1..934 17..950 4595 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
Ggt-1-RB 2212 CG6461-RB 290..1223 17..950 4625 99.7 Plus
Ggt-1-RA 2396 CG6461-RA 474..1407 17..950 4625 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18507753..18508683 950..20 4610 99.7 Minus
Blast to na_te.dros performed on 2015-02-11 10:38:53 has no hits.

BO09320.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:07:32 Download gff for BO09320.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6461-PA 1..934 17..950 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:10:09 Download gff for BO09320.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6461-PA 1..934 17..950 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:59:02 Download gff for BO09320.5prime
Subject Subject Range Query Range Percent Splice Strand
Ggt-1-RA 308..1245 14..950 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:20:13 Download gff for BO09320.5prime
Subject Subject Range Query Range Percent Splice Strand
Ggt-1-RA 470..1407 14..950 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:20:13 Download gff for BO09320.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18507753..18508694 8..950 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:59:02 Download gff for BO09320.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18401786..18402727 8..950 99   Minus

BO09320.complete Sequence

1771 bp (1771 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631472

> BO09320.complete
GAAGTTATCAGTCGACATGAGGATTGTGTGGAGTAAGAAGCTCTTGCTAT
GGCTACTGCTGGCTGCCCTCATGGTGACGGCGTTGACTCTGGGCTTGGTC
TTCGGTCTGAAGAATCGGGACACGCTGTACATCAGCGGAGCCGTGGTGTC
CAATGGCATCGGATGTGCTGCGGTCGGCGGTGAAATGCTGACCGATGGCG
GTTCCGCCGTGGATGCAGCCATTGCTACGCTGCTGTGCGAGGGCCTGCTA
TTGCCGCACTCAATGGGCATTGGCGGTGGCTTCGTGGCCACCATATATAC
GCGAAGTAGCCGCAAGGTGGAGACGGTGATTGCCAGGGAATCGGCACCGG
CGGCCGCGCACAAGGACATGTTCGTGGGCGAGACGTCGATTACGGGCGCC
AAATCGGGTGCGGTGCCCGGCGAGATTCTTGGCTACTGGGAGATGCATCG
TCGCTATGGCATCCTGCCCTGGAAACGCCTCTTCGAGCCGTCCATTAAGC
TGGCCCGCGAGGGTCATGTTGTTTCGCGCTATCTGGCCGCCGCCATCCAA
TCCAAGCTGGATAACATTAAGGCAGATCCCGGGCTCTCGGCCGTGTTCCT
CAACGCAACCGGTGATCCCCACTTGGAGGGCGATTACATGAAGCGTCCCG
CGCTGGCCGACACGCTGGAGCGGATTGCCGAGAATGGAGCCAAGGAGTTC
TACGATGGCGGCGAGACGGGTCGCAAGTTCGTCGAGGATATCCAGAAGAT
GGGCGGCATCATTACGGAGCAGGACCTGCGCGATTACACGGTGCGCTGGG
AGAGCGATGGACACGTGTCGGCCCATGTGAGTGGCACGTACACGCTCTAT
TCCACGCCCATGCCCAGCAGCGGACCCGTTCTGGCCTTCATCCTCAACCT
GATGGCCGATCTCTATACGGACAATGAGCCGATCTATTGGCAGCGCGTGG
TGGAGGCCTTTAAACACGCCTATGGCCAGCGCACCAATCTGGGTGATATG
TATGCCGATCCCGTGAGCGCCGCGTCCATCAATGCCACCCTGGAGGAGAT
GCTCAAGCCGGAGTTCCTGGAGAGCGTAAGGAAGCTGATCCACGACAATA
GCACTTCGGAGGACTACCTCTACTATGGCGCCAACTTCACCGTGGAGGAG
GACCATGGCACCGCCCACATGAATGTCTTGGCCACCAATGGAGACGCCGT
GTCCATCACCAGTACCATCAATAACTATTTCGGCTCCAAGGTGGCTTCCA
CCCAGACGGGAATCATTCTGAACGACGAGATGGACGACTTCTCCACGCCG
GGCGTGATCAATGGCTTCGGTGTGCCCGCCTCGCCGGCCAACTACATTTA
TCCCGGCAAGCGTCCCATGTCCTCGATGAGTCCGTGCATTATTGTTGACC
AGGAAGGCAATGTACGTTTGCTGGTCGGAGCAGCAGGTGGCACTCGCATC
ACCACCAGCGTGGCAGCTGTGATCATGAAGTACCTGCTACGCAAGGAGAG
CCTCACCGCGGCCGTGAACAATGGCCGCCTCCATCATCAGTTGGCTCCCA
TGCGCGTGAGCTATGAGCAGGAGGTGGACAGCAGCGTTACCGACTACCTG
AAGCAGGTGGGCCACGAGATGTACGAGGAGCCCGTCGGCTCCAGCTTTGC
AGCAGTGACCGCCATTGGGGCGCTGGAGCAGCCGGAGCCATTCTATGATC
GCCGTCGCATCGGCAGCGCCCTCACTCTGGCCAAAACCAACAAGATGCAG
CATGCAAGCTTTCTAGACCAT

BO09320.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:03:43
Subject Length Description Subject Range Query Range Score Percent Strand
Ggt-1-RB 1740 CG6461-PB 1..1737 17..1753 8685 100 Plus
Ggt-1-RA 1740 CG6461-PA 1..1737 17..1753 8685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:45
Subject Length Description Subject Range Query Range Score Percent Strand
Ggt-1-RB 2212 CG6461-RB 290..2026 17..1753 8685 100 Plus
Ggt-1-RA 2396 CG6461-RA 474..2210 17..1753 8685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18507476..18508683 1227..20 6040 100 Minus
X 23542271 X 18506069..18506353 1753..1469 1425 100 Minus
X 23542271 X 18506414..18506656 1470..1228 1215 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:03:42 has no hits.

BO09320.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:10 Download gff for BO09320.complete
Subject Subject Range Query Range Percent Splice Strand
CG6461-RA 1..1740 17..1754 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:05 Download gff for BO09320.complete
Subject Subject Range Query Range Percent Splice Strand
CG6461-RA 308..2048 14..1753 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:37 Download gff for BO09320.complete
Subject Subject Range Query Range Percent Splice Strand
Ggt-1-RA 312..2048 17..1755 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:10 Download gff for BO09320.complete
Subject Subject Range Query Range Percent Splice Strand
CG6461-RA 308..2048 14..1753 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:10:13 Download gff for BO09320.complete
Subject Subject Range Query Range Percent Splice Strand
Ggt-1-RA 474..2210 17..1755 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:10:13 Download gff for BO09320.complete
Subject Subject Range Query Range Percent Splice Strand
X 18506416..18506656 1228..1468 100 <- Minus
X 18506067..18506353 1469..1755 99 <- Minus
X 18507476..18508686 17..1227 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:37 Download gff for BO09320.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18400100..18400386 1469..1755 99 <- Minus
arm_X 18400449..18400689 1228..1468 100 <- Minus
arm_X 18401509..18402719 17..1227 99   Minus

BO09320.pep Sequence

Translation from 16 to 1771

> BO09320.pep
MRIVWSKKLLLWLLLAALMVTALTLGLVFGLKNRDTLYISGAVVSNGIGC
AAVGGEMLTDGGSAVDAAIATLLCEGLLLPHSMGIGGGFVATIYTRSSRK
VETVIARESAPAAAHKDMFVGETSITGAKSGAVPGEILGYWEMHRRYGIL
PWKRLFEPSIKLAREGHVVSRYLAAAIQSKLDNIKADPGLSAVFLNATGD
PHLEGDYMKRPALADTLERIAENGAKEFYDGGETGRKFVEDIQKMGGIIT
EQDLRDYTVRWESDGHVSAHVSGTYTLYSTPMPSSGPVLAFILNLMADLY
TDNEPIYWQRVVEAFKHAYGQRTNLGDMYADPVSAASINATLEEMLKPEF
LESVRKLIHDNSTSEDYLYYGANFTVEEDHGTAHMNVLATNGDAVSITST
INNYFGSKVASTQTGIILNDEMDDFSTPGVINGFGVPASPANYIYPGKRP
MSSMSPCIIVDQEGNVRLLVGAAGGTRITTSVAAVIMKYLLRKESLTAAV
NNGRLHHQLAPMRVSYEQEVDSSVTDYLKQVGHEMYEEPVGSSFAAVTAI
GALEQPEPFYDRRRIGSALTLAKTNKMQHASFLDH

BO09320.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
Ggt-1-PB 579 CG6461-PB 1..579 1..579 2977 100 Plus
Ggt-1-PA 579 CG6461-PA 1..579 1..579 2977 100 Plus
CG17636-PA 571 CG17636-PA 6..565 7..571 1576 55.3 Plus
CG17636-PC 585 CG17636-PC 20..579 7..571 1576 55.3 Plus
CG17636-PB 501 CG17636-PB 1..495 72..571 1426 55.2 Plus