Clone Sequence Records
BO09323.3prime Sequence
840 bp (763 high quality bases) assembled on 2006-01-18
> BO09323.3prime
ATGGTCTAGAAAGCTTGCTACAGTCGTGTAATGCGCCTTGCAGTGAACAA
TAAATTCGGACACGGGATCGTTGTCGCCCTCGCCGCGCATTGTACCGGTG
ATCTCCTCGTTCTCCACCATCGGCAGGAACAGCTGCACGAACTCCGGCGA
GTAGGGATGTGTGATAGTCTCCAGCACCTCGGTGACAAAGTATCGTATTA
GCGAAATGTCTGTGTCCTCGATGGCGCAGCACTGCTTTATGTATCTGAGA
ACGGGTACAACGCAGCCGCGCGTCAGCAGGTTAACCATTCGGTCCAGGAT
CATTTTCTTCATTTCCAATTGAACGAGAATCTCCAGCTCATCCTGCTTGG
ACTCAAATAAGCGGATGAGCAGGAAGAGGATCTGCTGCTGCAAGGTGGGA
TGAACGGCGGCCACTTCATCCAGTACCGCCAAGTGCGTGGGACAGCTGTC
TGTGGAGAGCTTGAAATATGAAGGCTCCATAACAACGTTTTCGATCCACC
GAATGACACCAACTCCCACCACAGGATATTTGATGCAATTATACAGCGTT
TGCAACTCGGCGATTAGCTCGGTGGATCCCTGGTCCACATTACAAATGGT
GTGTGCCTTTTCGATAGCCTGAATGGTGCTCTTTAGCTCCTCCTTGTTTA
GCATGCGCTCAGTCATTGGTCGCTTTTTGGCCGGCTGGTCGATGACCGCG
GACGCGTAGGCTAGCAGAAACATATACTTCGGTTTGTGCTCGGGATTGAT
TTTTAACGCCGGAACGAAAGAGCGCGTCTACCAGTAACTCCAGAAACTGG
GGGTTTCGTATCAAGTCGATGGGCGGTGGATCGGAACCGG
BO09323.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9984-PA | 1737 | TH1-RA | 1000..1734 | 753..19 | 3675 | 100 | Minus |
| CG9984-PA | 1737 | TH1-RA | 914..1003 | 840..751 | 425 | 98.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:16:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TH1-RB | 1967 | CG9984-RB | 998..1818 | 840..19 | 4070 | 99.8 | Minus |
| TH1-RA | 2297 | CG9984-RA | 998..1818 | 840..19 | 4070 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:15:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16389396..16389877 | 48..529 | 2410 | 100 | Plus |
| X | 23542271 | X | 16389946..16390255 | 530..840 | 1490 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:15:57 has no hits.
BO09323.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:07:36 Download gff for
BO09323.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TH1-PA | 914..1737 | 18..840 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:10:18 Download gff for
BO09323.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9984-PA | 914..1737 | 18..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:35:36 Download gff for
BO09323.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TH1-RA | 998..1824 | 11..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:07:25 Download gff for
BO09323.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TH1-RA | 998..1824 | 11..840 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:07:25 Download gff for
BO09323.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16389396..16389877 | 48..529 | 100 | <- | Plus |
| X | 16389946..16390255 | 530..840 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:35:36 Download gff for
BO09323.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16283429..16283910 | 48..529 | 100 | <- | Plus |
| arm_X | 16283979..16284288 | 530..840 | 99 | | Plus |
BO09323.5prime Sequence
789 bp (730 high quality bases) assembled on 2006-01-18
> BO09323.5prime
GAAGTTATCAGTCGACATGGAAGTGGAATACGACGACTCTGGTTGGCAGG
GCCGCGCCAAAGGACAAACCAATCCGGAGGAAACGCTTGAGGACAATCCG
CAGAAGACGATACAGGAATGCCTGGAGAAGTTCCTCACACCGGACTACAT
CATGGAGCCGGGGATATTTACGCAGCTGAAGCGCTACTTTCAGTCGGGCG
GATCTCCGGAGGAGGTTATATCGATGCTATCCGAGAACTACAAGGCGGTG
GCCCAGATGGCCAACCTGCTTGCGGAATGGCTCATCCTGGCGGGCGTCAA
GGTTACCGAAGTCCAGGCCATGGTGGAGAATCATCTCAAGGAAATGATTC
TTAAGTCCTTCGATCCCAAGAAGGCGGACACCATATTCACGGAGGAGGGT
GAGACGCCCGACTGGCTAACCGAGATGATCGACCACTATACGTGGCGCTC
GCTAATCTACCGACTGGCCGAAGAATATCCCGATTGTCTAATGCTGAACT
TTACAATCAAGTTGATCTCGGACGCGGGCTTCCAGAGCGAGATCACTTCC
ATTTCGACAGCGGCACAGCAGATTGAGGTTTTCTCGCGGGTTCTAAAGAC
CTCGATCGTCAAATTTCTAAACAATCCGGATGATGTGCACGGTGCCATTC
AGGAGTGCGCACGAATGGTCTGCCATGGCCAGCACACTTACGTATACTCC
CAGGTGCTCATCCAGGTCCTCAGCCAGGAGCAGAAGGGTGGGTTCAACAT
GAAGCGGCTCTCTCAGGAAATTATTAAATACGCCCTGCA
BO09323.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9984-PA | 1737 | TH1-RA | 1..773 | 17..789 | 3865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:40:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TH1-RB | 1967 | CG9984-RB | 85..857 | 17..789 | 3865 | 100 | Plus |
| TH1-RA | 2297 | CG9984-RA | 85..857 | 17..789 | 3865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:40:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16390466..16391177 | 789..78 | 3560 | 100 | Minus |
| X | 23542271 | X | 16391291..16391354 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:40:05 has no hits.
BO09323.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:07:38 Download gff for
BO09323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TH1-PA | 1..772 | 17..788 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:10:19 Download gff for
BO09323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9984-PA | 1..772 | 17..788 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:26:34 Download gff for
BO09323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TH1-RA | 78..856 | 10..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:57:31 Download gff for
BO09323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TH1-RA | 78..856 | 10..788 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:57:31 Download gff for
BO09323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16390467..16391175 | 80..788 | 100 | <- | Minus |
| X | 16391292..16391361 | 10..79 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:26:34 Download gff for
BO09323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16284500..16285208 | 80..788 | 100 | <- | Minus |
| arm_X | 16285325..16285394 | 10..79 | 94 | | Minus |
BO09323.complete Sequence
1768 bp (1768 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631473
> BO09323.complete
GAAGTTATCAGTCGACATGGAAGTGGAATACGACGACTCTGGTTGGCAGG
GCCGCGCCAAAGGACAAACCAATCCGGAGGAAACGCTTGAGGACAATCCG
CAGAAGACGATACAGGAATGCCTGGAGAAGTTCCTCACACCGGACTACAT
CATGGAGCCGGGGATATTTACGCAGCTGAAGCGCTACTTTCAGTCGGGCG
GATCTCCGGAGGAGGTTATATCGATGCTATCCGAGAACTACAAGGCGGTG
GCCCAGATGGCCAACCTGCTTGCGGAATGGCTCATCCTGGCGGGCGTCAA
GGTTACCGAAGTCCAGGCCATGGTGGAGAATCATCTCAAGGAAATGATTC
TTAAGTCCTTCGATCCCAAGAAGGCGGACACCATATTCACGGAGGAGGGT
GAGACGCCCGACTGGCTAACCGAGATGATCGACCACTATACGTGGCGCTC
GCTAATCTACCGACTGGCCGAAGAATATCCCGATTGTCTAATGCTGAACT
TTACAATCAAGTTGATCTCGGACGCGGGCTTCCAGAGCGAGATCACTTCC
ATTTCGACAGCGGCACAGCAGATTGAGGTTTTCTCGCGGGTTCTAAAGAC
CTCGATCGTCAAATTTCTAAACAATCCGGATGATGTGCACGGTGCCATTC
AGGAGTGCGCACGAATGGTCTGCCATGGCCAGCACACTTACGTATACTCC
CAGGTGCTCATCCAGGTCCTCAGCCAGGAGCAGAAGGGTGGGTTCAACAT
GAAGCGGCTCTCTCAGGAAATTATTAAATACGCCCTGCAGAACAATCAAA
ATGTAACGCCTATTACAATGGCCCTGAATGGTTCGGCAGTCTATCCGCAA
GCATGTCAAGCCCTAACTTCCATGCTCACCCGCAATACACTGAATCCCGC
CGATATCACCGTGCTGTTTCGCAACTACTCCGGTTCCGATCCACCGCCCA
TCGACTTGATACGAAACCCCCAGTTTCTGGAGCTACTGGTAGACGCGCTC
TTTCGTTCCGGCGTTAAAATCAATCCCGAGCACAAACCGAAGTATATGTT
TCTGCTAGCCTACGCGTCCGCGGTCATCGACCAGCCGGCCAAAAAGCGAC
CAATGACTGAGCGCATGCTAAACAAGGAGGAGCTAAAGAGCACCATTCAG
GCTATCGAAAAGGCACACACCATTTGTAATGTGGACCAGGGATCCACCGA
GCTAATCGCCGAGTTGCAAACGCTGTATAATTGCATCAAATATCCTGTGG
TGGGAGTTGGTGTCATTCGGTGGATCGAAAACGTTGTTATGGAGCCTTCA
TATTTCAAGCTCTCCACAGACAGCTGTCCCACGCACTTGGCGGTACTGGA
TGAAGTGGCCGCCGTTCATCCCACCTTGCAGCAGCAGATCCTCTTCCTGC
TCATCCGCTTATTTGAGTCCAAGCAGGATGAGCTGGAGATTCTCGTTCAA
TTGGAAATGAAGAAAATGATCCTGGACCGAATGGTTAACCTGCTGACGCG
CGGCTGCGTTGTACCCGTTCTCAGATACATAAAGCAGTGCTGCGCCATCG
AGGACACAGACATTTCGCTAATACGATACTTTGTCACCGAGGTGCTGGAG
ACTATCACACATCCCTACTCGCCGGAGTTCGTGCAGCTGTTCCTGCCGAT
GGTGGAGAACGAGGAGATCACCGGTACAATGCGCGGCGAGGGCGACAACG
ATCCCGTGTCCGAATTTATTGTTCACTGCAAGGCGCATTACACGACTGTA
GCAAGCTTTCTAGACCAT
BO09323.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:08:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TH1-RB | 1737 | CG9984-PB | 1..1734 | 17..1750 | 8670 | 100 | Plus |
| TH1-RA | 1737 | CG9984-PA | 1..1734 | 17..1750 | 8670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:08:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TH1-RB | 1967 | CG9984-RB | 85..1818 | 17..1750 | 8670 | 100 | Plus |
| TH1-RA | 2297 | CG9984-RA | 85..1818 | 17..1750 | 8670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:08:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16390453..16391177 | 802..78 | 3580 | 99.6 | Minus |
| X | 23542271 | X | 16389396..16389877 | 1721..1240 | 2410 | 100 | Minus |
| X | 23542271 | X | 16389946..16390392 | 1239..793 | 2235 | 100 | Minus |
| X | 23542271 | X | 16391291..16391354 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 02:08:06 has no hits.
BO09323.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:12 Download gff for
BO09323.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TH1-RA | 1..1737 | 17..1751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:08 Download gff for
BO09323.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TH1-RA | 50..1796 | 10..1758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:15 Download gff for
BO09323.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TH1-RA | 85..1818 | 17..1752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:12 Download gff for
BO09323.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TH1-RA | 50..1796 | 10..1758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:38:04 Download gff for
BO09323.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TH1-RA | 85..1818 | 17..1752 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:38:04 Download gff for
BO09323.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16389297..16389327 | 1722..1752 | 93 | <- | Minus |
| X | 16389396..16389877 | 1240..1721 | 100 | <- | Minus |
| X | 16389946..16390392 | 793..1239 | 100 | <- | Minus |
| X | 16390463..16391175 | 80..792 | 100 | <- | Minus |
| X | 16391292..16391354 | 17..79 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:15 Download gff for
BO09323.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16283330..16283360 | 1722..1752 | 93 | <- | Minus |
| arm_X | 16283429..16283910 | 1240..1721 | 100 | <- | Minus |
| arm_X | 16283979..16284425 | 793..1239 | 100 | <- | Minus |
| arm_X | 16284496..16285208 | 80..792 | 100 | <- | Minus |
| arm_X | 16285325..16285387 | 17..79 | 100 | | Minus |
BO09323.pep Sequence
Translation from 16 to 1768
> BO09323.pep
MEVEYDDSGWQGRAKGQTNPEETLEDNPQKTIQECLEKFLTPDYIMEPGI
FTQLKRYFQSGGSPEEVISMLSENYKAVAQMANLLAEWLILAGVKVTEVQ
AMVENHLKEMILKSFDPKKADTIFTEEGETPDWLTEMIDHYTWRSLIYRL
AEEYPDCLMLNFTIKLISDAGFQSEITSISTAAQQIEVFSRVLKTSIVKF
LNNPDDVHGAIQECARMVCHGQHTYVYSQVLIQVLSQEQKGGFNMKRLSQ
EIIKYALQNNQNVTPITMALNGSAVYPQACQALTSMLTRNTLNPADITVL
FRNYSGSDPPPIDLIRNPQFLELLVDALFRSGVKINPEHKPKYMFLLAYA
SAVIDQPAKKRPMTERMLNKEELKSTIQAIEKAHTICNVDQGSTELIAEL
QTLYNCIKYPVVGVGVIRWIENVVMEPSYFKLSTDSCPTHLAVLDEVAAV
HPTLQQQILFLLIRLFESKQDELEILVQLEMKKMILDRMVNLLTRGCVVP
VLRYIKQCCAIEDTDISLIRYFVTEVLETITHPYSPEFVQLFLPMVENEE
ITGTMRGEGDNDPVSEFIVHCKAHYTTVASFLDH
BO09323.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:00:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TH1-PB | 578 | CG9984-PB | 1..578 | 1..578 | 2990 | 100 | Plus |
| TH1-PA | 578 | CG9984-PA | 1..578 | 1..578 | 2990 | 100 | Plus |
