Clone BO09325 Report

Search the DGRC for BO09325

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:93
Well:25
Vector:pDNR-Dual
Associated Gene/Transcriptclt-RA
Protein status:BO09325.pep: validated full length
Sequenced Size:1720

Clone Sequence Records

BO09325.5prime Sequence

887 bp (846 high quality bases) assembled on 2006-01-18

> BO09325.5prime
GAAGTTATCAGTCGACATGCTTCTTCGTCCGTGTGGAAGACTAATCTTTA
CCAGGTTTTGCAGCAGCATGAAGGTGAAAGTGCCAGTGAAACAAGGCGTT
TTGGTGGGCCGGCAAAAGAAGCTGGTCAATGGATTGGAGTACAACAGTTT
CCTGGGTGTTCCCTACGCGGAACCACCAGTGGGAGAGCTTCGTTTCCGCA
GCCCGCGGCCATTGGAGCGCTTTCAAAAGCAGGAGCTGGACTGCAGCAAG
GAGGGCAACGTGTCTTACCAGCGAGATCCGTTTACTTTGGAGGTGGCCGG
CTCCGAGGACTGCCTTTTCCTTAATGTATATGCACCTAAAGTCAAAAGTA
CGCGGACTCCTTTACCCGTGATGGTCTGGATTCATGGTGGAGGCTTCTTC
TTCGGCAACGGCAACAGTGACTTCCACTTTCCCGCCAAGCTCATGGAGCA
GGAGGTCATTGTGGTCACCCTGAATTACCGACTTGGAGCGCTTGGTTTCC
TTAGTCTGCCCGAGGAGGGAATACACGGCAATATGGGGCTTAAGGATCAA
CGTCTGGCCCTCGAATGGGTGCAGGAGAACATAGCCAGCTTCAATGGCGA
TCCGAATAACGTAACGCTCTTCGGCGAGAGTGCGGGCGGTTCTTCAGTAC
ATCTGCACACTTTTGCCCGGCATGCCAAGCGACTATTCCACAAGGCTATC
ATGCAGAGTGGAACAGCGAACATGGAATGGGTTTTCCAGAACGAGGCACC
TGCCAAGACCCGACGACTGGCTGAACTCCTGGGTGGTGGTGATTTTGGCG
GCGACAGCAAAGCACTTTTGACCTTCCTGCAGTCAGAGAAGGCAACACCC
ACTGCCTTTTTGGCTAACACATTGAAAGTCTTAAGCC

BO09325.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG9858-PA 1689 clt-RA 1..871 17..887 4330 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
clt-RA 1844 CG9858-RA 108..978 17..887 4340 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:24:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21617927..21618390 887..424 2305 99.8 Minus
2R 25286936 2R 21618454..21618677 423..200 1120 100 Minus
2R 25286936 2R 21618737..21618864 199..72 640 100 Minus
2R 25286936 2R 21618914..21618972 75..17 295 100 Minus
Blast to na_te.dros performed on 2015-02-11 13:24:45 has no hits.

BO09325.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:07:41 Download gff for BO09325.5prime
Subject Subject Range Query Range Percent Splice Strand
clt-PA 1..871 17..887 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:10:24 Download gff for BO09325.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9858-PA 1..871 17..887 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:23:25 Download gff for BO09325.5prime
Subject Subject Range Query Range Percent Splice Strand
clt-RA 103..978 8..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:55:22 Download gff for BO09325.5prime
Subject Subject Range Query Range Percent Splice Strand
clt-RA 103..978 8..887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:55:22 Download gff for BO09325.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21617927..21618390 424..887 99 <- Minus
2R 21618454..21618677 200..423 100 <- Minus
2R 21618737..21618862 74..199 100 <- Minus
2R 21618916..21618977 8..73 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:23:25 Download gff for BO09325.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17505432..17505895 424..887 99 <- Minus
arm_2R 17505959..17506182 200..423 100 <- Minus
arm_2R 17506242..17506367 74..199 100 <- Minus
arm_2R 17506421..17506482 8..73 93   Minus

BO09325.3prime Sequence

891 bp (836 high quality bases) assembled on 2006-01-18

> BO09325.3prime
ATGGTCTAGAAAGCTTGCAAGTTTAGCTCTCACAGCTTCGAAATTTTCGC
TCCTGTATCTCCGGTACATGCTCCTCCAAAAGTCCATTCTTTCGCCATCC
GGATTGCTGCACATCTTCAGCTCCCGATCGATTAGCAGGCAGTCGAGTTG
GATGGGCTCGCCATTGTGTGGCTTCTTGACTGGTTTCCAAATGGGCGAAG
GTTTTCCATCGCGCGCGAAGTTCGCCCACATTTCACATAGCCGTTCCGTG
ACCATCAAGTCATCCCTATTCATCTCGGTCTCGTCACCTGCCATCTGGAA
CAGGTAGCAAATATCATCGGCATGAGCCACTCCACGCAGGTCTTCGTTTT
GGAAGATCTTCTTGTACAGATTACGACCGCCCACATAGTCCAAGCGATAG
AAGTACAGAGGAGATTGCGTTTGGCAGCTAGCGTGAATCTCCACTGCGCG
CTGCAGATCCATGCTGAAATGATAGTCGGAGAACAGGTCCACCAGGTTAT
CCATGTTTTCCTTAGACAGCGCCTGCCCGTTAAAGAAGAAGGCTCGTATG
TCGGAAGCAGCTTCCTGTGCCTCTGGAGCCTGTGGATCTAGCACCAGATT
GCGGGGAACCAACCTGGCCAAGTCATCTTCGTAGGCCTCCAGTTTTTGCT
TCGCCTTTACTACAATAGCCAACCCCTCGGCGGAGTTGTAACCCATTATC
ACTGGCATACTGCCGAGGCAGTCTTTTTTGTGCATCAGCTCCATGATGTC
CTGCTCAAGAAAACGATCCGGACTGCTGCTGTCCTCCACTACTGGCTTGA
ATGCAAAGGGCAGGTGACGTCGTCGCTCATCGGGGCTTAAGACTTTCAAT
GTGTTAGCCAAAATGGCAGTGGGTGTTGCCTTCTCTGACTG

BO09325.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG9858-PA 1689 clt-RA 814..1686 891..19 4365 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
clt-RA 1844 CG9858-RA 921..1793 891..19 4365 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21617112..21617984 19..891 4365 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:34:32 has no hits.

BO09325.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:07:40 Download gff for BO09325.3prime
Subject Subject Range Query Range Percent Splice Strand
clt-PA 814..1689 15..891 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:10:23 Download gff for BO09325.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9858-PA 814..1689 15..891 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:07:24 Download gff for BO09325.3prime
Subject Subject Range Query Range Percent Splice Strand
clt-RA 921..1798 12..891 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:28:11 Download gff for BO09325.3prime
Subject Subject Range Query Range Percent Splice Strand
clt-RA 921..1798 12..891 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:28:11 Download gff for BO09325.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21617107..21617984 12..891 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:07:24 Download gff for BO09325.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17504612..17505489 12..891 99   Plus

BO09325.complete Sequence

1720 bp (1720 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631474

> BO09325.complete
GAAGTTATCAGTCGACATGCTTCTTCGTCCGTGTGGAAGACTAATCTTTA
CCAGGTTTTGCAGCAGCATGAAGGTGAAAGTGCCAGTGAAACAAGGCGTT
TTGGTGGGCCGGCAAAAGAAGCTGGTCAATGGATTGGAGTACAACAGTTT
CCTGGGTGTTCCCTACGCGGAACCACCAGTGGGAGAGCTTCGTTTCCGCA
GCCCGCGGCCATTGGAGCGCTTTCAAAAGCAGGAGCTGGACTGCAGCAAG
GAGGGCAACGTGTCTTACCAGCGAGATCCGTTTACTTTGGAGGTGGCCGG
CTCCGAGGACTGCCTTTTCCTTAATGTATATGCACCTAAAGTCAAAAGTA
CGCGGACTCCTTTACCCGTGATGGTCTGGATTCATGGTGGAGGCTTCTTC
TTCGGCAACGGCAACAGTGACTTCCACTTTCCCGCCAAGCTCATGGAGCA
GGAGGTCATTGTGGTCACCCTGAATTACCGACTTGGAGCGCTTGGTTTCC
TTAGTCTGCCCGAGGAGGGAATACACGGCAATATGGGGCTTAAGGATCAA
CGTCTGGCCCTCGAATGGGTGCAGGAGAACATAGCCAGCTTCAATGGCGA
TCCGAATAACGTAACGCTCTTCGGCGAGAGTGCGGGCGGTTCTTCAGTAC
ATCTGCACACTTTTGCCCGGCATGCCAAGCGACTATTCCACAAGGCTATC
ATGCAGAGTGGAACAGCGAACATGGAATGGGTTTTCCAGAACGAGGCACC
TGCCAAGACCCGACGACTGGCTGAACTCCTGGGTGGTGGTGATTTTGGCG
GCGACAGCAAAGCACTTTTGACCTTCCTGCAGTCAGAGAAGGCAACACCC
ACTGCCATTTTGGCTAACACATTGAAAGTCTTAAGCCCCGATGAGCGACG
ACGTCACCTGCCCTTTGCATTCAAGCCAGTAGTGGAGGACAGCAGCAGTC
CGGATCGTTTTCTTGAGCAGGACATCATGGAGCTGATGCACAAAAAAGAC
TGCCTCGGCAGTATGCCAGTGATAATGGGTTACAACTCCGCCGAGGGGTT
GGCTATTGTAGTAAAGGCGAAGCAAAAACTGGAGGCCTACGAAGATGACT
TGGCCAGGTTGGTTCCCCGCAATCTGGTGCTAGATCCACAGGCTCCAGAG
GCACAGGAAGCTGCTTCCGACATACGAGCCTTCTTCTTTAACGGGCAGGC
GCTGTCTAAGGAAAACATGGATAACCTGGTGGACCTGTTCTCCGACTATC
ATTTCAGCATGGATCTGCAGCGCGCAGTGGAGATTCACGCTAGCTGCCAA
ACGCAATCTCCTCTGTACTTCTATCGCTTGGACTATGTGGGCGGTCGTAA
TCTGTACAAGAAGATCTTCCAAAACGAAGACCTGCGTGGAGTGGCTCATG
CCGATGATATTTGCTACCTGTTCCAGATGGCAGGTGACGAGACCGAGATG
AATAGGGATGACTTGATGGTCACGGAACGGCTATGTGAAATGTGGGCGAA
CTTCGCGCGCGATGGAAAACCTTCGCCCATTTGGAAACCAGTCAAGAAGC
CACACAATGGCGAGCCCATCCAACTCGACTGCCTGCTAATCGATCGGGAG
CTGAAGATGTGCAGCAATCCGGATGGCGAAAGAATGGACTTTTGGAGGAG
CATGTACCGGAGATACAGGAGCGAAAATTTCGAAGCTGTGAGAGCTAAAC
TTGCAAGCTTTCTAGACCAT

BO09325.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
clt-RA 1689 CG9858-PA 1..1686 17..1702 8430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:37
Subject Length Description Subject Range Query Range Score Percent Strand
clt-RA 1844 CG9858-RA 108..1793 17..1702 8430 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21617112..21618390 1702..424 6395 100 Minus
2R 25286936 2R 21618454..21618677 423..200 1120 100 Minus
2R 25286936 2R 21618737..21618864 199..72 640 100 Minus
2R 25286936 2R 21618914..21618972 75..17 295 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:04:35 has no hits.

BO09325.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:13 Download gff for BO09325.complete
Subject Subject Range Query Range Percent Splice Strand
clt-RA 1..1689 17..1706 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:10 Download gff for BO09325.complete
Subject Subject Range Query Range Percent Splice Strand
clt-RA 83..1778 8..1709 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:44:15 Download gff for BO09325.complete
Subject Subject Range Query Range Percent Splice Strand
clt-RA 108..1793 17..1704 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:17:56 Download gff for BO09325.complete
Subject Subject Range Query Range Percent Splice Strand
clt-RA 108..1793 17..1704 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:17:56 Download gff for BO09325.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21617110..21618390 424..1704 99 <- Minus
2R 21618454..21618677 200..423 100 <- Minus
2R 21618737..21618862 74..199 100 <- Minus
2R 21618916..21618972 17..73 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:44:15 Download gff for BO09325.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17504615..17505895 424..1704 99 <- Minus
arm_2R 17505959..17506182 200..423 100 <- Minus
arm_2R 17506242..17506367 74..199 100 <- Minus
arm_2R 17506421..17506477 17..73 100   Minus

BO09325.pep Sequence

Translation from 16 to 1720

> BO09325.pep
MLLRPCGRLIFTRFCSSMKVKVPVKQGVLVGRQKKLVNGLEYNSFLGVPY
AEPPVGELRFRSPRPLERFQKQELDCSKEGNVSYQRDPFTLEVAGSEDCL
FLNVYAPKVKSTRTPLPVMVWIHGGGFFFGNGNSDFHFPAKLMEQEVIVV
TLNYRLGALGFLSLPEEGIHGNMGLKDQRLALEWVQENIASFNGDPNNVT
LFGESAGGSSVHLHTFARHAKRLFHKAIMQSGTANMEWVFQNEAPAKTRR
LAELLGGGDFGGDSKALLTFLQSEKATPTAILANTLKVLSPDERRRHLPF
AFKPVVEDSSSPDRFLEQDIMELMHKKDCLGSMPVIMGYNSAEGLAIVVK
AKQKLEAYEDDLARLVPRNLVLDPQAPEAQEAASDIRAFFFNGQALSKEN
MDNLVDLFSDYHFSMDLQRAVEIHASCQTQSPLYFYRLDYVGGRNLYKKI
FQNEDLRGVAHADDICYLFQMAGDETEMNRDDLMVTERLCEMWANFARDG
KPSPIWKPVKKPHNGEPIQLDCLLIDRELKMCSNPDGERMDFWRSMYRRY
RSENFEAVRAKLASFLDH

BO09325.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:00:55
Subject Length Description Subject Range Query Range Score Percent Strand
clt-PA 562 CG9858-PA 1..562 1..562 2963 100 Plus
alpha-Est2-PB 566 CG2505-PB 26..562 13..549 766 37.2 Plus
alpha-Est2-PA 566 CG2505-PA 26..562 13..549 766 37.2 Plus
CG6018-PA 566 CG6018-PA 34..562 21..549 747 35.8 Plus
alpha-Est7-PA 572 CG1112-PA 33..564 20..547 747 35.3 Plus