Clone BO09331 Report

Search the DGRC for BO09331

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:93
Well:31
Vector:pDNR-Dual
Associated Gene/Transcriptyellow-b-RA
Protein status:BO09331.pep: validated full length
Sequenced Size:1393

Clone Sequence Records

BO09331.3prime Sequence

955 bp (827 high quality bases) assembled on 2006-01-18

> BO09331.3prime
ATGGTCTAGAAAGCTTGCGATTCTAAAGCTCATCAGCAAACATAAGGCAA
TCAGCATAAGGGAGCTGAGGTTCCTAAGGGAAGAAGCCGAATTGGACTTC
AGTTTGATGTTAGTATTGAGAATATCCCCCAGTTTGTTGATTACATCTGG
CAGAGGGGAAGTTCTAATTTCACAGGCTGTATTCTCAATGGCCTCCTTAA
CACTGGCAGTCAGGATACGGAAGTTTATTGAGCCGGCGTACAGTTCATCG
TAGATGAAGACGGGTAGCTGATTGGATAGGACCCATAGACGTTTCTGATC
ATCAACCTTGATGTCACTGGGGAACACCAAGGTATCATTGTTCATGTGGA
TGCGGCTCTGGGAACTGTGACTAAAGTCTGTGGCAGTGCGCCAGCAGGCG
ACTTCGTTCAGATTGGGCAGGGCGTAGAATAGGACTCCGGTATCCGGATC
CAAGAACTCGGCTCCAGCCTGGGTGTTCGGTCCTCTGGAGCCCAGCACCT
TGAATTCTCGATAAATCATCGGCGAAGTGGCCAGGGTCTTGTTACGCAAT
ATCGATGTATCCACCGAGAATTCCGTAGTGGAGCAGAGGGGATGGAAGTA
CAATGTGGCATAGCCCGTTTCCAGGGGCTTCGATAGAGCCAGTCCGTATA
GGCCATCATCCCATTGAAACTCAATGCCATTGATGCTGAAGTTACCGGCC
ATTGGATCTGGGTGGAAGAAGTGATGCTGCACACGCCACGATTCCTCATC
CTTCCATGAGTAAACCACCAAGCCGGGACTGCCCAAATCGGCTGCGTAGG
CAAAGGTATTCTCACAGTCAGAGTCCTCCACCGCCAGATTGGCCAGTAAA
GATCCCTGCTTTCACTGACCGGCGGGCAAAACGTGTCGTCTCACCAAATC
ATCATTGTGCAGATCGTAGACCAGCAGCTGGGCTGCCTCATAGATCTTGG
TCTGC

BO09331.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17914-PA 1362 yellow-b-RA 423..1359 955..19 4560 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-b-RB 1839 CG17914-RB 682..1618 955..19 4610 99.5 Minus
yellow-b-RA 1659 CG17914-RA 502..1438 955..19 4610 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:13:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16757126..16758062 955..19 4610 99.5 Minus
Blast to na_te.dros performed on 2015-02-11 23:14:03 has no hits.

BO09331.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:07:48 Download gff for BO09331.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17914-PA 423..1362 18..955 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:10:33 Download gff for BO09331.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17914-PA 423..1362 18..955 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:33:10 Download gff for BO09331.3prime
Subject Subject Range Query Range Percent Splice Strand
yellow-b-RA 502..1444 11..955 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:35:58 Download gff for BO09331.3prime
Subject Subject Range Query Range Percent Splice Strand
yellow-b-RA 502..1444 11..955 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:35:58 Download gff for BO09331.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16757126..16758061 20..955 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:33:10 Download gff for BO09331.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16757126..16758061 20..955 99 <- Minus

BO09331.5prime Sequence

900 bp (850 high quality bases) assembled on 2006-01-18

> BO09331.5prime
GAAGTTATCAGTCGACATGCTGCGATTCAGATTAGGCCTGCTACTTCTGT
GGGCGGTCTCTGCCCTGGCGAACGACAATCTTCGCGTAGCGTACGAGTGG
CGGGAAATGGACTTCAAGTACGCCAATCCAGACCAAAGATGGTCGGCCAT
CGAGCGGGGCGAGTTCAAGCCGGCCAATGTGATACCCTTTGGCCTGGAGG
TTGCCGGCCACCGACTCTTTGTCACCCTGCCCAGATGGAGGGACGGAGTG
CCGGCCTCGTTGGCCTACCTTGATCTTAATGATACCTCCAGCAAGGGTCC
AGCCTTGAAGCCATTCCCCAGCTGGCAGGCTCACAATCTCCAGGAAGCCG
AACCGGAATTGGTTTCTCCATTCCGCGTGCGAGCCGATAGATGCGGACGC
CTGTGGGTGCTCGACTCTAGGATCTCCGGAGTCCTGGAGCAGACCAAGAT
CTATGGAGCAGCCCAGCTGCTGGTCTACGATCTGCACAATGATGATTTGT
TGAGACGACACGTTTTGCCCGCCGGTCAGTTGAAGCAGGGATCTTTACTG
GCCAATCTGGCGGTGGAGGACTCTGACTGTGAGAATACCTTTGCCTACGC
AGCCGATTTGGGCAGTCCCGGCTTGGTGGTTTACTCATGGAAGGATGAGG
AATCGTGGCGTGTGCAGCATCACTTCTTCCACCCAGATCCAATGGCCGGT
AACTTCAGCATCAATGGCATTGAGTTTCAATGGGATGATGGCCTATACGG
ACTGGCTCTATCGAAGCCCCTGGAAACGGGCTATGCCACATTGTACTTCC
ATCCCCTCTGCTCCACTACGGAATTCTCGGTGGATACATCGATATTGCGT
AACAAGACCCTGGCCACTTCGCCGATGATTTATCGAGAATTCAAGGTGCT

BO09331.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG17914-PA 1362 yellow-b-RA 1..884 17..900 4420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-b-RB 1839 CG17914-RB 257..1143 14..900 4435 100 Plus
yellow-b-RA 1659 CG17914-RA 77..963 14..900 4435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16756968..16757587 281..900 3100 100 Plus
2L 23513712 2L 16755696..16755963 14..281 1340 100 Plus
Blast to na_te.dros performed on 2015-02-13 07:38:02 has no hits.

BO09331.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:07:49 Download gff for BO09331.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17914-PA 1..884 17..900 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:10:34 Download gff for BO09331.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17914-PA 1..884 17..900 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:48:37 Download gff for BO09331.5prime
Subject Subject Range Query Range Percent Splice Strand
yellow-b-RA 69..963 5..900 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:56:32 Download gff for BO09331.5prime
Subject Subject Range Query Range Percent Splice Strand
yellow-b-RA 69..963 5..900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:56:32 Download gff for BO09331.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16755688..16755963 5..281 98 -> Plus
2L 16756969..16757587 282..900 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:48:37 Download gff for BO09331.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16755688..16755963 5..281 98 -> Plus
arm_2L 16756969..16757587 282..900 100   Plus

BO09331.complete Sequence

1393 bp (1393 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631476

> BO09331.complete
GAAGTTATCAGTCGACATGCTGCGATTCAGATTAGGCCTGCTACTTCTGT
GGGCGGTCTCTGCCCTGGCGAACGACAATCTTCGCGTAGCGTACGAGTGG
CGGGAAATGGACTTCAAGTACGCCAATCCAGACCAAAGATGGTCGGCCAT
CGAGCGGGGCGAGTTCAAGCCGGCCAATGTGATACCCTTTGGCCTGGAGG
TTGCCGGCCACCGACTCTTTGTCACCCTGCCCAGATGGAGGGACGGAGTG
CCGGCCTCGTTGGCCTACCTTGATCTTAATGATACCTCCAGCAAGGGTCC
AGCCTTGAAGCCATTCCCCAGCTGGCAGGCTCACAATCTCCAGGAAGCCG
AACCGGAATTGGTTTCTCCATTCCGCGTGCGAGCCGATAGATGCGGACGC
CTGTGGGTGCTCGACTCTAGGATCTCCGGAGTCCTGGAGCAGACCAAGAT
CTATGGAGCAGCCCAGCTGCTGGTCTACGATCTGCACAATGATGATTTGT
TGAGACGACACGTTTTGCCCGCCGGTCAGTTGAAGCAGGGATCTTTACTG
GCCAATCTGGCGGTGGAGGACTCTGACTGTGAGAATACCTTTGCCTACGC
AGCCGATTTGGGCAGTCCCGGCTTGGTGGTTTACTCATGGAAGGATGAGG
AATCGTGGCGTGTGCAGCATCACTTCTTCCACCCAGATCCAATGGCCGGT
AACTTCAGCATCAATGGCATTGAGTTTCAATGGGATGATGGCCTATACGG
ACTGGCTCTATCGAAGCCCCTGGAAACGGGCTATGCCACATTGTACTTCC
ATCCCCTCTGCTCCACTACGGAATTCTCGGTGGATACATCGATATTGCGT
AACAAGACCCTGGCCACTTCGCCGATGATTTATCGAGAATTCAAGGTGCT
GGGCTCCAGAGGACCGAACACCCAGGCTGGAGCCGAGTTCTTGGATCCGG
ATACCGGAGTCCTATTCTACGCCCTGCCCAATCTGAACGAAGTCGCCTGC
TGGCGCACTGCCACAGACTTTAGTCACAGTTCCCAGAGCCGCATCCACAT
GAACAATGATACCTTGGTGTTCCCCAGTGACATCAAGGTTGATGATCAGA
AACGTCTATGGGTCCTATCCAATCAGCTACCCGTCTTCATCTACGATGAA
CTGTACGCCGGCTCAATAAACTTCCGTATCCTGACTGCCAGTGTTAAGGA
GGCCATTGAGAATACAGCCTGTGAAATTAGAACTTCCCCTCTGCCAGATG
TAATCAACAAACTGGGGGATATTCTCAATACTAACATCAAACTGAAGTCC
AATTCGGCTTCTTCCCTTAGGAACCTCAGCTCCCTTATGCTGATTGCCTT
ATGTTTGCTGATGAGCTTTAGAATCGCAAGCTTTCTAGACCAT

BO09331.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-b-RB 1362 CG17914-PB 1..1359 17..1375 6795 100 Plus
yellow-b-RA 1362 CG17914-PA 1..1359 17..1375 6795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-b-RB 1839 CG17914-RB 257..1618 14..1375 6810 100 Plus
yellow-b-RA 1659 CG17914-RA 77..1438 14..1375 6810 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16756968..16758062 281..1375 5475 100 Plus
2L 23513712 2L 16755696..16755963 14..281 1340 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:50:44 has no hits.

BO09331.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:59 Download gff for BO09331.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-b-RA 1..1362 17..1376 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:43 Download gff for BO09331.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-b-RA 69..1444 5..1383 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:13 Download gff for BO09331.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-b-RA 80..1438 17..1377 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:59 Download gff for BO09331.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-b-RA 69..1444 5..1383 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:55 Download gff for BO09331.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-b-RA 80..1438 17..1377 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:55 Download gff for BO09331.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16755699..16755963 17..281 100 -> Plus
2L 16756969..16758062 282..1377 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:13 Download gff for BO09331.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16755699..16755963 17..281 100 -> Plus
arm_2L 16756969..16758062 282..1377 99   Plus

BO09331.pep Sequence

Translation from 16 to 1393

> BO09331.pep
MLRFRLGLLLLWAVSALANDNLRVAYEWREMDFKYANPDQRWSAIERGEF
KPANVIPFGLEVAGHRLFVTLPRWRDGVPASLAYLDLNDTSSKGPALKPF
PSWQAHNLQEAEPELVSPFRVRADRCGRLWVLDSRISGVLEQTKIYGAAQ
LLVYDLHNDDLLRRHVLPAGQLKQGSLLANLAVEDSDCENTFAYAADLGS
PGLVVYSWKDEESWRVQHHFFHPDPMAGNFSINGIEFQWDDGLYGLALSK
PLETGYATLYFHPLCSTTEFSVDTSILRNKTLATSPMIYREFKVLGSRGP
NTQAGAEFLDPDTGVLFYALPNLNEVACWRTATDFSHSSQSRIHMNNDTL
VFPSDIKVDDQKRLWVLSNQLPVFIYDELYAGSINFRILTASVKEAIENT
ACEIRTSPLPDVINKLGDILNTNIKLKSNSASSLRNLSSLMLIALCLLMS
FRIASFLDH

BO09331.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-b-PB 453 CG17914-PB 1..453 1..453 2379 100 Plus
yellow-b-PA 453 CG17914-PA 1..453 1..453 2379 100 Plus
yellow-c-PB 438 CG4182-PB 6..438 1..404 840 37.6 Plus
yellow-c-PA 438 CG4182-PA 6..438 1..404 840 37.6 Plus
y-PA 541 CG3757-PA 25..410 22..407 772 37.5 Plus