Clone Sequence Records
BO09331.3prime Sequence
955 bp (827 high quality bases) assembled on 2006-01-18
> BO09331.3prime
ATGGTCTAGAAAGCTTGCGATTCTAAAGCTCATCAGCAAACATAAGGCAA
TCAGCATAAGGGAGCTGAGGTTCCTAAGGGAAGAAGCCGAATTGGACTTC
AGTTTGATGTTAGTATTGAGAATATCCCCCAGTTTGTTGATTACATCTGG
CAGAGGGGAAGTTCTAATTTCACAGGCTGTATTCTCAATGGCCTCCTTAA
CACTGGCAGTCAGGATACGGAAGTTTATTGAGCCGGCGTACAGTTCATCG
TAGATGAAGACGGGTAGCTGATTGGATAGGACCCATAGACGTTTCTGATC
ATCAACCTTGATGTCACTGGGGAACACCAAGGTATCATTGTTCATGTGGA
TGCGGCTCTGGGAACTGTGACTAAAGTCTGTGGCAGTGCGCCAGCAGGCG
ACTTCGTTCAGATTGGGCAGGGCGTAGAATAGGACTCCGGTATCCGGATC
CAAGAACTCGGCTCCAGCCTGGGTGTTCGGTCCTCTGGAGCCCAGCACCT
TGAATTCTCGATAAATCATCGGCGAAGTGGCCAGGGTCTTGTTACGCAAT
ATCGATGTATCCACCGAGAATTCCGTAGTGGAGCAGAGGGGATGGAAGTA
CAATGTGGCATAGCCCGTTTCCAGGGGCTTCGATAGAGCCAGTCCGTATA
GGCCATCATCCCATTGAAACTCAATGCCATTGATGCTGAAGTTACCGGCC
ATTGGATCTGGGTGGAAGAAGTGATGCTGCACACGCCACGATTCCTCATC
CTTCCATGAGTAAACCACCAAGCCGGGACTGCCCAAATCGGCTGCGTAGG
CAAAGGTATTCTCACAGTCAGAGTCCTCCACCGCCAGATTGGCCAGTAAA
GATCCCTGCTTTCACTGACCGGCGGGCAAAACGTGTCGTCTCACCAAATC
ATCATTGTGCAGATCGTAGACCAGCAGCTGGGCTGCCTCATAGATCTTGG
TCTGC
BO09331.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17914-PA | 1362 | yellow-b-RA | 423..1359 | 955..19 | 4560 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:14:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-b-RB | 1839 | CG17914-RB | 682..1618 | 955..19 | 4610 | 99.5 | Minus |
yellow-b-RA | 1659 | CG17914-RA | 502..1438 | 955..19 | 4610 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:13:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16757126..16758062 | 955..19 | 4610 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:14:03 has no hits.
BO09331.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:07:48 Download gff for
BO09331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17914-PA | 423..1362 | 18..955 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:10:33 Download gff for
BO09331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17914-PA | 423..1362 | 18..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:33:10 Download gff for
BO09331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-b-RA | 502..1444 | 11..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:35:58 Download gff for
BO09331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-b-RA | 502..1444 | 11..955 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:35:58 Download gff for
BO09331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16757126..16758061 | 20..955 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:33:10 Download gff for
BO09331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16757126..16758061 | 20..955 | 99 | <- | Minus |
BO09331.5prime Sequence
900 bp (850 high quality bases) assembled on 2006-01-18
> BO09331.5prime
GAAGTTATCAGTCGACATGCTGCGATTCAGATTAGGCCTGCTACTTCTGT
GGGCGGTCTCTGCCCTGGCGAACGACAATCTTCGCGTAGCGTACGAGTGG
CGGGAAATGGACTTCAAGTACGCCAATCCAGACCAAAGATGGTCGGCCAT
CGAGCGGGGCGAGTTCAAGCCGGCCAATGTGATACCCTTTGGCCTGGAGG
TTGCCGGCCACCGACTCTTTGTCACCCTGCCCAGATGGAGGGACGGAGTG
CCGGCCTCGTTGGCCTACCTTGATCTTAATGATACCTCCAGCAAGGGTCC
AGCCTTGAAGCCATTCCCCAGCTGGCAGGCTCACAATCTCCAGGAAGCCG
AACCGGAATTGGTTTCTCCATTCCGCGTGCGAGCCGATAGATGCGGACGC
CTGTGGGTGCTCGACTCTAGGATCTCCGGAGTCCTGGAGCAGACCAAGAT
CTATGGAGCAGCCCAGCTGCTGGTCTACGATCTGCACAATGATGATTTGT
TGAGACGACACGTTTTGCCCGCCGGTCAGTTGAAGCAGGGATCTTTACTG
GCCAATCTGGCGGTGGAGGACTCTGACTGTGAGAATACCTTTGCCTACGC
AGCCGATTTGGGCAGTCCCGGCTTGGTGGTTTACTCATGGAAGGATGAGG
AATCGTGGCGTGTGCAGCATCACTTCTTCCACCCAGATCCAATGGCCGGT
AACTTCAGCATCAATGGCATTGAGTTTCAATGGGATGATGGCCTATACGG
ACTGGCTCTATCGAAGCCCCTGGAAACGGGCTATGCCACATTGTACTTCC
ATCCCCTCTGCTCCACTACGGAATTCTCGGTGGATACATCGATATTGCGT
AACAAGACCCTGGCCACTTCGCCGATGATTTATCGAGAATTCAAGGTGCT
BO09331.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17914-PA | 1362 | yellow-b-RA | 1..884 | 17..900 | 4420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:38:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-b-RB | 1839 | CG17914-RB | 257..1143 | 14..900 | 4435 | 100 | Plus |
yellow-b-RA | 1659 | CG17914-RA | 77..963 | 14..900 | 4435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:38:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16756968..16757587 | 281..900 | 3100 | 100 | Plus |
2L | 23513712 | 2L | 16755696..16755963 | 14..281 | 1340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:38:02 has no hits.
BO09331.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:07:49 Download gff for
BO09331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17914-PA | 1..884 | 17..900 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:10:34 Download gff for
BO09331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17914-PA | 1..884 | 17..900 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:48:37 Download gff for
BO09331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-b-RA | 69..963 | 5..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:56:32 Download gff for
BO09331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-b-RA | 69..963 | 5..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:56:32 Download gff for
BO09331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16755688..16755963 | 5..281 | 98 | -> | Plus |
2L | 16756969..16757587 | 282..900 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:48:37 Download gff for
BO09331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16755688..16755963 | 5..281 | 98 | -> | Plus |
arm_2L | 16756969..16757587 | 282..900 | 100 | | Plus |
BO09331.complete Sequence
1393 bp (1393 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631476
> BO09331.complete
GAAGTTATCAGTCGACATGCTGCGATTCAGATTAGGCCTGCTACTTCTGT
GGGCGGTCTCTGCCCTGGCGAACGACAATCTTCGCGTAGCGTACGAGTGG
CGGGAAATGGACTTCAAGTACGCCAATCCAGACCAAAGATGGTCGGCCAT
CGAGCGGGGCGAGTTCAAGCCGGCCAATGTGATACCCTTTGGCCTGGAGG
TTGCCGGCCACCGACTCTTTGTCACCCTGCCCAGATGGAGGGACGGAGTG
CCGGCCTCGTTGGCCTACCTTGATCTTAATGATACCTCCAGCAAGGGTCC
AGCCTTGAAGCCATTCCCCAGCTGGCAGGCTCACAATCTCCAGGAAGCCG
AACCGGAATTGGTTTCTCCATTCCGCGTGCGAGCCGATAGATGCGGACGC
CTGTGGGTGCTCGACTCTAGGATCTCCGGAGTCCTGGAGCAGACCAAGAT
CTATGGAGCAGCCCAGCTGCTGGTCTACGATCTGCACAATGATGATTTGT
TGAGACGACACGTTTTGCCCGCCGGTCAGTTGAAGCAGGGATCTTTACTG
GCCAATCTGGCGGTGGAGGACTCTGACTGTGAGAATACCTTTGCCTACGC
AGCCGATTTGGGCAGTCCCGGCTTGGTGGTTTACTCATGGAAGGATGAGG
AATCGTGGCGTGTGCAGCATCACTTCTTCCACCCAGATCCAATGGCCGGT
AACTTCAGCATCAATGGCATTGAGTTTCAATGGGATGATGGCCTATACGG
ACTGGCTCTATCGAAGCCCCTGGAAACGGGCTATGCCACATTGTACTTCC
ATCCCCTCTGCTCCACTACGGAATTCTCGGTGGATACATCGATATTGCGT
AACAAGACCCTGGCCACTTCGCCGATGATTTATCGAGAATTCAAGGTGCT
GGGCTCCAGAGGACCGAACACCCAGGCTGGAGCCGAGTTCTTGGATCCGG
ATACCGGAGTCCTATTCTACGCCCTGCCCAATCTGAACGAAGTCGCCTGC
TGGCGCACTGCCACAGACTTTAGTCACAGTTCCCAGAGCCGCATCCACAT
GAACAATGATACCTTGGTGTTCCCCAGTGACATCAAGGTTGATGATCAGA
AACGTCTATGGGTCCTATCCAATCAGCTACCCGTCTTCATCTACGATGAA
CTGTACGCCGGCTCAATAAACTTCCGTATCCTGACTGCCAGTGTTAAGGA
GGCCATTGAGAATACAGCCTGTGAAATTAGAACTTCCCCTCTGCCAGATG
TAATCAACAAACTGGGGGATATTCTCAATACTAACATCAAACTGAAGTCC
AATTCGGCTTCTTCCCTTAGGAACCTCAGCTCCCTTATGCTGATTGCCTT
ATGTTTGCTGATGAGCTTTAGAATCGCAAGCTTTCTAGACCAT
BO09331.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:50:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-b-RB | 1362 | CG17914-PB | 1..1359 | 17..1375 | 6795 | 100 | Plus |
yellow-b-RA | 1362 | CG17914-PA | 1..1359 | 17..1375 | 6795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:50:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-b-RB | 1839 | CG17914-RB | 257..1618 | 14..1375 | 6810 | 100 | Plus |
yellow-b-RA | 1659 | CG17914-RA | 77..1438 | 14..1375 | 6810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:50:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16756968..16758062 | 281..1375 | 5475 | 100 | Plus |
2L | 23513712 | 2L | 16755696..16755963 | 14..281 | 1340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:50:44 has no hits.
BO09331.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:59 Download gff for
BO09331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-b-RA | 1..1362 | 17..1376 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:43 Download gff for
BO09331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-b-RA | 69..1444 | 5..1383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:13 Download gff for
BO09331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-b-RA | 80..1438 | 17..1377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:59 Download gff for
BO09331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-b-RA | 69..1444 | 5..1383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:55 Download gff for
BO09331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-b-RA | 80..1438 | 17..1377 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:55 Download gff for
BO09331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16755699..16755963 | 17..281 | 100 | -> | Plus |
2L | 16756969..16758062 | 282..1377 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:13 Download gff for
BO09331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16755699..16755963 | 17..281 | 100 | -> | Plus |
arm_2L | 16756969..16758062 | 282..1377 | 99 | | Plus |
BO09331.pep Sequence
Translation from 16 to 1393
> BO09331.pep
MLRFRLGLLLLWAVSALANDNLRVAYEWREMDFKYANPDQRWSAIERGEF
KPANVIPFGLEVAGHRLFVTLPRWRDGVPASLAYLDLNDTSSKGPALKPF
PSWQAHNLQEAEPELVSPFRVRADRCGRLWVLDSRISGVLEQTKIYGAAQ
LLVYDLHNDDLLRRHVLPAGQLKQGSLLANLAVEDSDCENTFAYAADLGS
PGLVVYSWKDEESWRVQHHFFHPDPMAGNFSINGIEFQWDDGLYGLALSK
PLETGYATLYFHPLCSTTEFSVDTSILRNKTLATSPMIYREFKVLGSRGP
NTQAGAEFLDPDTGVLFYALPNLNEVACWRTATDFSHSSQSRIHMNNDTL
VFPSDIKVDDQKRLWVLSNQLPVFIYDELYAGSINFRILTASVKEAIENT
ACEIRTSPLPDVINKLGDILNTNIKLKSNSASSLRNLSSLMLIALCLLMS
FRIASFLDH
BO09331.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-b-PB | 453 | CG17914-PB | 1..453 | 1..453 | 2379 | 100 | Plus |
yellow-b-PA | 453 | CG17914-PA | 1..453 | 1..453 | 2379 | 100 | Plus |
yellow-c-PB | 438 | CG4182-PB | 6..438 | 1..404 | 840 | 37.6 | Plus |
yellow-c-PA | 438 | CG4182-PA | 6..438 | 1..404 | 840 | 37.6 | Plus |
y-PA | 541 | CG3757-PA | 25..410 | 22..407 | 772 | 37.5 | Plus |