Clone Sequence Records
BO09332.3prime Sequence
900 bp (832 high quality bases) assembled on 2006-01-18
> BO09332.3prime
ATGGTCTAGAAAGCTTGCACTGAACAAATTTATAGATACCAAACAGACGC
ATAAAATTGACCAAATGAAGACGAAAACTAGCCAGGCACTGGACTTGAAA
GGACTTTTAAAACGATTGACTACGCCGCTTCCCAGGAGCTCTGAGCAAGT
GCGTCTCGCAAAGTAAACCAAGAAAACGGGGATAATGTATTGAATGCCAG
TGCCTGCGTAGGTGCCAGTAAATGCCACCAAACTGGATAAACTTTCAGTG
AAATAGGTGATACAAAAAGGCGGAATTATGGCGAGCAAAGGGAAGCACAG
GCGTAGGATAACGCTATAGGATTCATATTGCGACATGTCTAGGAATAGAG
ATTGAAGGTTGTTCTTCAGCGTTATGGCAACAATGGGAAAACTGGTTGAC
AGGGTAAATATGGGAAAAAGTGCAAGGAAGTAATCAATGCAAATCAATAG
ACCTGACCAAAAGTCTACGTAGGCCACATCGTAGGGCAAAAAATCTAATG
TGTAAAGGTCTTCGATTCGTTCGAAGGCAAAAATGCCTGTCATGGCCAGT
AGAATGTAAAATGCACAAATGATTATGTAGTCAATGGATAGAATTTTGGA
AACCATTGACTTGTGTCTGATGGGCGCCAGCAAACTGGGCAGTGAGTGGT
GGCACATGAAGGAGTAAACACAGGCGCCGAAAAGAGAGGGAATTCCATAT
ACATTAAAGGTCGCTGGATGACCTTTGGCACCTCTGGAAATCAAAAGTTT
TAGCGATATGCAGATCATCAGGGTAAAAGCCATCCACCGAAAAGCAGCGG
TCAGCATCTGCAGGTACTTCGTTTTCTGCACATTAAAGTACACAAATGGA
CCAAAGATCAATGTGAATCCTATGAGCAACACCCTGTACATGTTCAAGCG
BO09332.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5262-PA | 1530 | CG5262-RA | 646..1527 | 900..19 | 4410 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:27:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5262-RB | 2033 | CG5262-RB | 758..1639 | 900..19 | 4410 | 100 | Minus |
| CG5262-RA | 1895 | CG5262-RA | 758..1639 | 900..19 | 4410 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:27:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20428356..20429117 | 19..780 | 3810 | 100 | Plus |
| 3L | 28110227 | 3L | 20429169..20429289 | 780..900 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:27:27 has no hits.
BO09332.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:07:50 Download gff for
BO09332.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5262-PA | 646..1530 | 15..900 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:10:36 Download gff for
BO09332.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5262-PA | 646..1530 | 15..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:27:52 Download gff for
BO09332.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5262-RA | 758..1649 | 8..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:37:55 Download gff for
BO09332.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5262-RA | 758..1649 | 8..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:37:55 Download gff for
BO09332.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20428346..20429116 | 8..779 | 99 | <- | Plus |
| 3L | 20429169..20429289 | 780..900 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:27:52 Download gff for
BO09332.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20421446..20422216 | 8..779 | 99 | <- | Plus |
| arm_3L | 20422269..20422389 | 780..900 | 100 | | Plus |
BO09332.5prime Sequence
908 bp (817 high quality bases) assembled on 2006-01-18
> BO09332.5prime
GAAGTTATCAGTCGACATGCCTCGCCTTGTCAATGGCCGCGAAGCCGCGC
CCACGTACTCGAATCTGGTTGGCTTCATATTCATTTTCAATCTAATCGTT
GGAACCGGAGCGCTGACGCTACCCGGAGTCTTTGCCAGGGCAGGATGGAT
GCTTTCCCTGATCGTCATTGTTCTGCTGGCCATCATCAGTTACATGACGG
TCACTTTTATCATAGAAGCAATGGCTTGTGCGAATGCAATCAGGAATTGG
CAGACTCTGCAGGCCCTGCGCCAAAGTCGCAGTTCCGCCGAAAACAGTGA
AAACGATGATAATGCTGATGATGTTTCGCTGGCATCGGGAGCCGAGCAAG
TTGGCGATTTCGAGCGGGTTCCGCTGACCATCCAAAACCGGGAGTTCCAC
TACTATCAGCTGTCCCACAAATTCGAACTTGGCGAAATGGCGACACTATT
CTTTAATGAGTTTGGCCGCGTAATGTTCTATCTCTGCCTGATTGTTTATC
TTTACGGGGATCTGAGCATATATTCCGCCGCCGTGGCAAGAAGTCTGCGT
GACGTCGTATGTGACCAAACAAATGGAACGGATACTAATAACTTGATGTA
TTGGCCCGGAGACTTTGAGAACAATACATCTCTGGCCTGCTGGAAGGAAC
ACACGATATCTCGCTTGAACATGTACAGGGTGTTGCTCATAGGATTCACA
TTGATCTTTGGTCCATTTGTGTACTTTAATGTGCAGAAAACGAAGTACCT
GCAGATGCTGACCGCTGCTTTTCGGTGGATGGCTTTTACCCTGATGATCT
GCATATCGCTAAAACTTTTGATTTCCAGAGGTGCCAAAGGTCATCCAGCG
ACCTTTAATGTATATGGAATTCCCTCTCTTTTCGGCGCCTGTGTTTACTC
CTTCATGT
BO09332.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5262-PA | 1530 | CG5262-RA | 1..892 | 17..908 | 4460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:38:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5262-RB | 2033 | CG5262-RB | 113..1004 | 17..908 | 4460 | 100 | Plus |
| CG5262-RA | 1895 | CG5262-RA | 113..1004 | 17..908 | 4460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:38:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20429516..20430010 | 561..67 | 2475 | 100 | Minus |
| 3L | 28110227 | 3L | 20429169..20429390 | 782..561 | 1110 | 100 | Minus |
| 3L | 28110227 | 3L | 20428991..20429117 | 908..782 | 635 | 100 | Minus |
| 3L | 28110227 | 3L | 20430311..20430363 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:38:40 has no hits.
BO09332.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:07:51 Download gff for
BO09332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5262-PA | 1..892 | 17..908 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:10:37 Download gff for
BO09332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5262-PA | 1..892 | 17..908 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:59:00 Download gff for
BO09332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5262-RA | 107..1004 | 11..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:19:55 Download gff for
BO09332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5262-RA | 107..1004 | 11..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:19:55 Download gff for
BO09332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20428991..20429116 | 783..908 | 100 | <- | Minus |
| 3L | 20429169..20429389 | 562..782 | 100 | <- | Minus |
| 3L | 20429516..20430009 | 68..561 | 100 | <- | Minus |
| 3L | 20430313..20430369 | 11..67 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:59:00 Download gff for
BO09332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20422091..20422216 | 783..908 | 100 | <- | Minus |
| arm_3L | 20422269..20422489 | 562..782 | 100 | <- | Minus |
| arm_3L | 20422616..20423109 | 68..561 | 100 | <- | Minus |
| arm_3L | 20423413..20423469 | 11..67 | 94 | | Minus |
BO09332.complete Sequence
1561 bp (1561 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631477
> BO09332.complete
GAAGTTATCAGTCGACATGCCTCGCCTTGTCAATGGCCGCGAAGCCGCGC
CCACGTACTCGAATCTGGTTGGCTTCATATTCATTTTCAATCTAATCGTT
GGAACCGGAGCGCTGACGCTACCCGGAGTCTTTGCCAGGGCAGGATGGAT
GCTTTCCCTGATCGTCATTGTTCTGCTGGCCATCATCAGTTACATGACGG
TCACTTTTATCATAGAAGCAATGGCTTGTGCGAATGCAATCAGGAATTGG
CAGACTCTGCAGGCCCTGCGCCAAAGTCGCAGTTCCGCCGAAAACAGTGA
AAACGATGATAATGCTGATGATGTTTCGCTGGCATCGGGAGCCGAGCAAG
TTGGCGATTTCGAGCGGGTTCCGCTGACCATCCAAAACCGGGAGTTCCAC
TACTATCAGCTGTCCCACAAATTCGAACTTGGCGAAATGGCGACACTATT
CTTTAATGAGTTTGGCCGCGTAATGTTCTATCTCTGCCTGATTGTTTATC
TTTACGGGGATCTGAGCATATATTCCGCCGCCGTGGCAAGAAGTCTGCGT
GACGTCGTATGTGACCAAACAAATGGAACGGATACTAATAACTTGATGTA
TTGGCCCGGAGACTTTGAGAACAATACATCTCTGGCCTGCTGGAAGGAAC
ACACGATATCTCGCTTGAACATGTACAGGGTGTTGCTCATAGGATTCACA
TTGATCTTTGGTCCATTTGTGTACTTTAATGTGCAGAAAACGAAGTACCT
GCAGATGCTGACCGCTGCTTTTCGGTGGATGGCTTTTACCCTGATGATCT
GCATATCGCTAAAACTTTTGATTTCCAGAGGTGCCAAAGGTCATCCAGCG
ACCTTTAATGTATATGGAATTCCCTCTCTTTTCGGCGCCTGTGTTTACTC
CTTCATGTGCCACCACTCACTGCCCAGTTTGCTGGCGCCCATCAGACACA
AGTCAATGGTTTCCAAAATTCTATCCATTGACTACATAATCATTTGTGCA
TTTTACATTCTACTGGCCATGACAGGCATTTTTGCCTTCGAACGAATCGA
AGACCTTTACACATTAGATTTTTTGCCCTACGATGTGGCCTACGTAGACT
TTTGGTCAGGTCTATTGATTTGCATTGATTACTTCCTTGCACTTTTTCCC
ATATTTACCCTGTCAACCAGTTTTCCCATTGTTGCCATAACGCTGAAGAA
CAACCTTCAATCTCTATTCCTAGACATGTCGCAATATGAATCCTATAGCG
TTATCCTACGCCTGTGCTTCCCTTTGCTCGCCATAATTCCGCCTTTTTGT
ATCACCTATTTCACTGAAAGTTTATCCAGTTTGGTGGCATTTACTGGCAC
CTACGCAGGCACTGGCATTCAATACATTATCCCCGTTTTCTTGGTTTACT
TTGCGAGACGCACTTGCTCAGAGCTCCTGGGAAGCGGCGTAGTCAATCGT
TTTAAAAGTCCTTTCAAGTCCAGTGCCTGGCTAGTTTTCGTCTTCATTTG
GTCAATTTTATGCGTCTGTTTGGTATCTATAAATTTGTTCAGTGCAAGCT
TTCTAGACCAT
BO09332.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:20:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5262-RB | 1530 | CG5262-PB | 1..1527 | 17..1543 | 7635 | 100 | Plus |
| CG5262-RA | 1530 | CG5262-PA | 1..1527 | 17..1543 | 7635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5262-RB | 2033 | CG5262-RB | 113..1639 | 17..1543 | 7635 | 100 | Plus |
| CG5262-RA | 1895 | CG5262-RA | 113..1639 | 17..1543 | 7635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20428356..20429117 | 1543..782 | 3810 | 100 | Minus |
| 3L | 28110227 | 3L | 20429516..20430010 | 561..67 | 2475 | 100 | Minus |
| 3L | 28110227 | 3L | 20429169..20429390 | 782..561 | 1110 | 100 | Minus |
| 3L | 28110227 | 3L | 20430311..20430363 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:20:27 has no hits.
BO09332.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:00 Download gff for
BO09332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5262-RA | 1..1530 | 17..1547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:45 Download gff for
BO09332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5262-RA | 116..1658 | 11..1554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:22 Download gff for
BO09332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5262-RA | 113..1639 | 17..1545 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:00 Download gff for
BO09332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5262-RA | 116..1658 | 11..1554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:09 Download gff for
BO09332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5262-RA | 113..1639 | 17..1545 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:09 Download gff for
BO09332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20428354..20429116 | 783..1545 | 99 | <- | Minus |
| 3L | 20429169..20429389 | 562..782 | 100 | <- | Minus |
| 3L | 20429516..20430009 | 68..561 | 100 | <- | Minus |
| 3L | 20430313..20430363 | 17..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:22 Download gff for
BO09332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20421454..20422216 | 783..1545 | 99 | <- | Minus |
| arm_3L | 20422269..20422489 | 562..782 | 100 | <- | Minus |
| arm_3L | 20422616..20423109 | 68..561 | 100 | <- | Minus |
| arm_3L | 20423413..20423463 | 17..67 | 100 | | Minus |
BO09332.pep Sequence
Translation from 16 to 1561
> BO09332.pep
MPRLVNGREAAPTYSNLVGFIFIFNLIVGTGALTLPGVFARAGWMLSLIV
IVLLAIISYMTVTFIIEAMACANAIRNWQTLQALRQSRSSAENSENDDNA
DDVSLASGAEQVGDFERVPLTIQNREFHYYQLSHKFELGEMATLFFNEFG
RVMFYLCLIVYLYGDLSIYSAAVARSLRDVVCDQTNGTDTNNLMYWPGDF
ENNTSLACWKEHTISRLNMYRVLLIGFTLIFGPFVYFNVQKTKYLQMLTA
AFRWMAFTLMICISLKLLISRGAKGHPATFNVYGIPSLFGACVYSFMCHH
SLPSLLAPIRHKSMVSKILSIDYIIICAFYILLAMTGIFAFERIEDLYTL
DFLPYDVAYVDFWSGLLICIDYFLALFPIFTLSTSFPIVAITLKNNLQSL
FLDMSQYESYSVILRLCFPLLAIIPPFCITYFTESLSSLVAFTGTYAGTG
IQYIIPVFLVYFARRTCSELLGSGVVNRFKSPFKSSAWLVFVFIWSILCV
CLVSINLFSASFLDH
BO09332.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5262-PB | 509 | CG5262-PB | 1..509 | 1..509 | 2643 | 100 | Plus |
| CG5262-PA | 509 | CG5262-PA | 1..509 | 1..509 | 2643 | 100 | Plus |
