Clone Sequence Records
BO09333.3prime Sequence
956 bp (856 high quality bases) assembled on 2006-01-18
> BO09333.3prime
ATGGTCTAGAAAGCTTGCAATCAGAGAGCTTTGCGCCCACTGAGCAACCT
CTGTGGGAAGGGCCTGGTATCGCTGCATACAGTGGTGAATCTGGCTGTAT
GTCAGCGCCAGCTTATGCATCTCAAACTCTTTCTGCACCTTACCTACGCC
CCCTCCAGCTCCACCGGTGAGCGGCATGATCAGCTCTGCGATGCGTAAAT
GCTCGAAGGCCTTCAGGACAATGGACCGCTCCACGGCCTGCATTGTGGTG
GACACTTTGGCAAACTTGGAAAAGCGCGCGTAAATGATCTCGAAGTTGAA
GGAATCGCGATCGTAAATCTGCGAATGGTGCTTGATGGCGATGATCAGGC
ACAGCTCTAGGACTGAGAGCCCGCAAAGCAGCTCTATCTTGTCGTCGCCC
TCAAACTGTGATCCCACTGCAGCCATTTTTTCGGCTGTGATGTGGGGAGA
TTGCGGTCGGAGATGTGCCACCAGGCGGAATAGGAAGTTCTTGAGATAGG
CCTCGCTAATGTCGAAGTCATGGAGCGCTTGGAGGGTGCTTCTTGCCTGC
TGAGTGGCCAGGACTTTGCATATTTGCTTGTTCCAGGCATCGCGTAGTCT
GGGCGAAAAGCCGTACTCCCCGGGGTCAAAATGGTTGCGGGAGAAGTAAA
GTGCCCCCGACTGGATGTTTTGTAGGTTATAGATTTTCTCCGCCGCCAGC
AACAGTGAATTGCCGGTCGGGAGGGACAGTAGATCCCTGCACAGGTCAAC
GTAATCCTCAAAGCGCCGCAAGCTGGGAAAGAGAAAGACCTGCCGGTGCG
AGAAACGCGACTTGACCCGCTTCTCCAGCAGCTCGATCACGTCGAGGCGA
CAGGTAACGCCAAGTACACAGATGGGCGCCTGGGCTGACTGGGAGACGTC
GAAAAAGTTGTAGAGCAGGGTCTGGTTGTGGTGAGCACAGAAAAGGTCGA
ACTCCT
BO09333.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2917-PA | 1380 | Orc4-RA | 440..1377 | 956..19 | 4615 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:27:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc4-RA | 1615 | CG2917-RA | 562..1499 | 956..19 | 4645 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:27:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24795856..24796793 | 19..956 | 4645 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:27:15 has no hits.
BO09333.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:07:52 Download gff for
BO09333.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc4-PA | 440..1380 | 18..956 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:10:39 Download gff for
BO09333.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2917-PA | 440..1380 | 18..956 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:27:50 Download gff for
BO09333.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc4-RA | 562..1503 | 13..956 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:37:53 Download gff for
BO09333.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc4-RA | 562..1503 | 13..956 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:37:53 Download gff for
BO09333.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24795849..24796793 | 13..956 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:27:50 Download gff for
BO09333.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20683372..20684316 | 13..956 | 99 | | Plus |
BO09333.5prime Sequence
902 bp (789 high quality bases) assembled on 2006-01-18
> BO09333.5prime
GAAGTTATCAGTCGACATGCCGGAGGCGGATAGGGAGCTGGTCAGCATCA
GGCGCTTCCTGAAGGAGCGCCTCCAGCGAGACTACACCACCTTGAGGGGC
TACGCAAAGGAGCGGTCCAATGTGCGCCTATTGCTGCAACGCACAGCTGA
AATGGGGGAATCCAACTCCTTGCTGCTCCTTGGGCCGCGGGGATCCGGAA
AGACAACGCTCATCAACTCCGTGCTGGCCGATTTGCTGCCCAATAAATCG
TTCGGGGAAAACACTCTCATCGTCCACCTGGACGGTAATCTGCACACGGA
CGACCGAGTGGCCCTGAAGTCCATCACTGTGCAGATGCAGCTGGAGAACG
CTGCGGATGGGAAAGTGTTCGGATCGTTCGCCGAGAACCTCGCCTTCCTG
CTGCAATGCCTCAAGGCGGGTGGCAAGCATTCCAAGAGCGTGATCTTTAT
TCTCGAGGAGTTCGACCTCTTCTGTGCTCACCACAACCAGACCCTGCTCT
ACAACCTCTTCGACGTCTCCCAGTCAGCCCAGGCGCCCATCTGTGTACTT
GGCGTTACCTGTCGCCTCGACGTGATCGAGCTGCTGGAGAAGCGGGTCAA
GTCGCGTTTCTCGCACCGGCAGGTCTTTCTCTTTCCCAGCTTGCGGCGCT
TTGAGGATTACGTTGACCTGTGCAGGGATCTACTGTCCCTCCCGACCGGC
AATTCACTGTTGCTGGCGGCGGAGAAAATCTATAACCTACAAAACATCCA
GTCGGGGGCACTTTACTTCTCCCGCAACCATTTTGACCCCGGGGAGTACG
GCTTTTCGCCCAGACTACGCGATGCCTGGAACAAGCAAATATGCAAAGTC
CTGGCCACTCAGCAGGCAAGAAGCACCCTCCAAGCGCTCCATGACTTCGA
CA
BO09333.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2917-PA | 1380 | Orc4-RA | 1..886 | 17..902 | 4430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:49:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc4-RA | 1615 | CG2917-RA | 123..1008 | 17..902 | 4430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:49:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24796347..24797041 | 902..208 | 3475 | 100 | Minus |
| 2R | 25286936 | 2R | 24797101..24797292 | 208..17 | 960 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:49:50 has no hits.
BO09333.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:07:53 Download gff for
BO09333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc4-PA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:10:40 Download gff for
BO09333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2917-PA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:17:54 Download gff for
BO09333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc4-RA | 116..1007 | 10..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:08:03 Download gff for
BO09333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc4-RA | 116..1007 | 10..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:08:03 Download gff for
BO09333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24796348..24797040 | 209..901 | 100 | <- | Minus |
| 2R | 24797101..24797299 | 10..208 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:17:54 Download gff for
BO09333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20683871..20684563 | 209..901 | 100 | <- | Minus |
| arm_2R | 20684624..20684822 | 10..208 | 98 | | Minus |
BO09333.complete Sequence
1411 bp (1411 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631478
> BO09333.complete
GAAGTTATCAGTCGACATGCCGGAGGCGGATAGGGAGCTGGTCAGCATCA
GGCGCTTCCTGAAGGAGCGCCTCCAGCGAGACTACACCACCTTGAGGGGC
TACGCAAAGGAGCGGTCCAATGTGCGCCTATTGCTGCAACGCACAGCTGA
AATGGGGGAATCCAACTCCTTGCTGCTCCTTGGGCCGCGGGGATCCGGAA
AGACAACGCTCATCAACTCCGTGCTGGCCGATTTGCTGCCCAATAAATCG
TTCGGGGAAAACACTCTCATCGTCCACCTGGACGGTAATCTGCACACGGA
CGACCGAGTGGCCCTGAAGTCCATCACTGTGCAGATGCAGCTGGAGAACG
CTGCGGATGGGAAAGTGTTCGGATCGTTCGCCGAGAACCTCGCCTTCCTG
CTGCAATGCCTCAAGGCGGGTGGCAAGCATTCCAAGAGCGTGATCTTTAT
TCTCGAGGAGTTCGACCTCTTCTGTGCTCACCACAACCAGACCCTGCTCT
ACAACCTCTTCGACGTCTCCCAGTCAGCCCAGGCGCCCATCTGTGTACTT
GGCGTTACCTGTCGCCTCGACGTGATCGAGCTGCTGGAGAAGCGGGTCAA
GTCGCGTTTCTCGCACCGGCAGGTCTTTCTCTTTCCCAGCTTGCGGCGCT
TTGAGGATTACGTTGACCTGTGCAGGGATCTACTGTCCCTCCCGACCGGC
AATTCACTGTTGCTGGCGGCGGAGAAAATCTATAACCTACAAAACATCCA
GTCGGGGGCACTTTACTTCTCCCGCAACCATTTTGACCCCGGGGAGTACG
GCTTTTCGCCCAGACTACGCGATGCCTGGAACAAGCAAATATGCAAAGTC
CTGGCCACTCAGCAGGCAAGAAGCACCCTCCAAGCGCTCCATGACTTCGA
CATTAGCGAGGCCTATCTCAAGAACTTCCTATTCCGCCTGGTGGCACATC
TCCGACCGCAATCTCCCCACATCACAGCCGAAAAAATGGCTGCAGTGGGA
TCACAGTTTGAGGGCGACGACAAGATAGAGCTGCTTTGCGGGCTCTCAGT
CCTAGAGCTGTGCCTGATCATCGCCATCAAGCACCATTCGCAGATTTACG
ATCGCGATTCCTTCAACTTCGAGATCATTTACGCGCGCTTTTCCAAGTTT
GCCAAAGTGTCCACCACAATGCAGGCCGTGGAGCGGTCCATTGTCCTGAA
GGCCTTCGAGCATTTACGCATCGCAGAGCTGATCATGCCGCTCACCGGTG
GAGCTGGAGGGGGCGTAGGTAAGGTGCAGAAAGAGTTTGAGATGCATAAG
CTGGCGCTGACATACAGCCAGATTCACCACTGTATGCAGCGATACCAGGC
CCTTCCCACAGAGGTTGCTCAGTGGGCGCAAAGCTCTCTGATTGCAAGCT
TTCTAGACCAT
BO09333.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:32:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc4-RA | 1380 | CG2917-PA | 1..1377 | 17..1393 | 6885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:32:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc4-RA | 1615 | CG2917-RA | 123..1499 | 17..1393 | 6885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:32:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24795856..24797041 | 1393..208 | 5930 | 100 | Minus |
| 2R | 25286936 | 2R | 24797101..24797292 | 208..17 | 960 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:32:19 has no hits.
BO09333.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:01 Download gff for
BO09333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc4-RA | 1..1380 | 17..1394 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:48 Download gff for
BO09333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc4-RA | 106..1493 | 10..1399 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:17:25 Download gff for
BO09333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc4-RA | 123..1499 | 17..1395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:02 Download gff for
BO09333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc4-RA | 106..1493 | 10..1399 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:38 Download gff for
BO09333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc4-RA | 123..1499 | 17..1395 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:38 Download gff for
BO09333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24797101..24797292 | 17..208 | 100 | | Minus |
| 2R | 24795852..24797040 | 209..1395 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:17:25 Download gff for
BO09333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20683375..20684563 | 209..1395 | 99 | <- | Minus |
| arm_2R | 20684624..20684815 | 17..208 | 100 | | Minus |
BO09333.pep Sequence
Translation from 16 to 1411
> BO09333.pep
MPEADRELVSIRRFLKERLQRDYTTLRGYAKERSNVRLLLQRTAEMGESN
SLLLLGPRGSGKTTLINSVLADLLPNKSFGENTLIVHLDGNLHTDDRVAL
KSITVQMQLENAADGKVFGSFAENLAFLLQCLKAGGKHSKSVIFILEEFD
LFCAHHNQTLLYNLFDVSQSAQAPICVLGVTCRLDVIELLEKRVKSRFSH
RQVFLFPSLRRFEDYVDLCRDLLSLPTGNSLLLAAEKIYNLQNIQSGALY
FSRNHFDPGEYGFSPRLRDAWNKQICKVLATQQARSTLQALHDFDISEAY
LKNFLFRLVAHLRPQSPHITAEKMAAVGSQFEGDDKIELLCGLSVLELCL
IIAIKHHSQIYDRDSFNFEIIYARFSKFAKVSTTMQAVERSIVLKAFEHL
RIAELIMPLTGGAGGGVGKVQKEFEMHKLALTYSQIHHCMQRYQALPTEV
AQWAQSSLIASFLDH
BO09333.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc4-PA | 459 | CG2917-PA | 1..459 | 1..459 | 2342 | 100 | Plus |
