Clone Sequence Records
BO09339.3prime Sequence
863 bp (853 high quality bases) assembled on 2006-01-18
> BO09339.3prime
ATGGTCTAGAAAGCTTGCGATTCGGGCGAGTTGAGCAGTTGTCGAGGATC
CGGCGGAGACGCAAAGTTCGGCGCCGTGGTTGCTTCCACCCTCCCGGGAA
ATGCTCTTCACGTGGATGTGGCTCTTGAGCATTGCAGCACGAAGAACAAG
CATGCGGGTATGACGCTGGTACTGCTTGCCCATGATCAAAGCCCGCTCAA
AGGTGCTGTTCCTTTGATCCGCCTCCTTGGCGAACAGGATCTTATTGTGG
GAGTCAATACGCGCCTGGATCTGTCCGTCTAATATCAACTGCATCACCTC
GTTCTCCAGATCGCCCACCGACGAGTTAAATGCCATGGCCATTTTGTGCA
TATCAGCTGACATATAGGGGCTAAAGTACTGGATTAGCGCGCGATTGCGT
ATCTTGGTATACAGAGTGGTTACATGGGGCGCAATGTACATGTCAACCAG
CAGGTTGTCCCTAATCTCATCCAGAAGCGTCAGACATGAGGCGTATTTAC
TTTCGTAGAACTTGAAAATAATATCCCTGAGTTGGGGCTCCAGTTCTAAG
AACAATTTAAAGGATGTAGAGGCGATGACCAGACGCTTAAGCTCCTGTCG
ATCAAAGGTGGCCAGGGCGCAGAGGCCACCATAGACCGCCACATTGCTGG
TGGAGATCATTTCGGGAAAGTCGCAGTGATCGAAGTTAGCATTGAGGAAA
TGCTTAGCGGCCACCTTATATTTCTTTTGCTGCAGTTCCGCCAGACCAGC
AGCGCATTCAAGGCGAGTATGAACCTGGGCATTAGCCTCCTTGGAGCCCT
CGGCGAAGTCCGGGGTGCTTTCCGCCTTGGATATGTAGCTCATCACATGG
GCCCATTTCTGGA
BO09339.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3889-PA | 1578 | CSN1b-RA | 731..1575 | 863..19 | 4200 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:11:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CSN1b-RA | 1802 | CG3889-RA | 867..1711 | 863..19 | 4210 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:11:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18903148..18903992 | 19..863 | 4210 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:11:15 has no hits.
BO09339.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:08:02 Download gff for
BO09339.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN1b-PA | 732..1578 | 18..862 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:10:52 Download gff for
BO09339.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3889-PA | 732..1578 | 18..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:48:54 Download gff for
BO09339.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN1b-RA | 868..1717 | 13..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:24 Download gff for
BO09339.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN1b-RA | 868..1717 | 13..862 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:24 Download gff for
BO09339.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18903144..18903991 | 15..862 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:48:54 Download gff for
BO09339.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18896244..18897091 | 15..862 | 99 | | Plus |
BO09339.5prime Sequence
891 bp (823 high quality bases) assembled on 2006-01-18
> BO09339.5prime
GAAGTTATCAGTCGACATGCCCGTGCTGCCGATGCCACCACTCATGCAGA
ACGCCGTGGAGCCGATGCAAGTGGACATCGCGCCGCCGAACGAGGACAAC
GAAAACAACGAGGAGCAGCAGATTGTGGTGGAGAACCCCAGCATCGATCT
CGAAGTGTACGCCAACCAATATGCCGGGATCGTGCGGCTCCATCGCCTAA
TTTATGTGGCGGACGTCTGCCCGGTTTTAGCCGTGGAGGCTCTGAAAATG
GCCATTACTTACGTTCAAACCACCTACAACGTAAATCTCTACCAAGTGCT
GCACAAGCGCTTGAGTGATCTAAACGCTGGAAATGCGCCTGCGCCACCAG
CAAATGCTGGCGGAGATCAGGCAGGAGCAGCGGCTCCCGGTCCCCTGGCA
GCTGCTCCCCTTCCGGATATCGCGGCACAACCTGTGGCTCAGGCTCAAGG
ACAGGCTCAACCCGCTGTCGAAAAGGATGCCTTCGCCTACGATGCCGCTT
GGGTAGACACCAAGATGAAGAAGGCGGCTCTTAAGCTGGAGAAACTGGAC
TCAGACCTCAAGAACTACAAGTCCAATTCGATCAAGGAGAGCATCCGGAG
GGGCCACGATGACCTGGCTGACCACTACCTCAGTTGTGGCGACCTCACCA
ATGCCCTGAAGTGCTATTCTCGGGCCAGAGACTACTGCACTAGTGGCAAG
CATGTGGTAAACATGTGCCTTAACGTGATCAAGGTGTCAATTTATCTCCA
GAATTGGGCCCATGTGATGAGCTACATATCCAAGGCGGAAAGCACCCCGG
ACTTCGCCGAGGGCTCCAAGGAGGCTAATGCCCAGGTTCATACTCGCCCT
TGATGCGCTGCTGGTCTGGCGGAACTGCAGCAAAGAAATAT
BO09339.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3889-PA | 1578 | CSN1b-RA | 1..832 | 17..848 | 4160 | 100 | Plus |
CG3889-PA | 1578 | CSN1b-RA | 837..868 | 853..884 | 160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:18:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CSN1b-RA | 1802 | CG3889-RA | 137..1012 | 17..891 | 4310 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:18:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18903855..18904691 | 884..48 | 4140 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:18:38 has no hits.
BO09339.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:08:03 Download gff for
BO09339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN1b-PA | 1..876 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:10:53 Download gff for
BO09339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3889-PA | 1..876 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:26:02 Download gff for
BO09339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN1b-RA | 133..1012 | 9..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:38:14 Download gff for
BO09339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN1b-RA | 133..1012 | 9..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:38:14 Download gff for
BO09339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18903847..18904689 | 50..891 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:26:02 Download gff for
BO09339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18896947..18897789 | 50..891 | 99 | <- | Minus |
BO09339.complete Sequence
1609 bp (1609 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631479
> BO09339.complete
GAAGTTATCAGTCGACATGCCCGTGCTGCCGATGCCACCACTCATGCAGA
ACGCCGTGGAGCCGATGCAAGTGGACATCGCGCCGCCGAACGAGGACAAC
GAAAACAACGAGGAGCAGCAGATTGTGGTGGAGAACCCCAGCATCGATCT
CGAAGTGTACGCCAACCAATATGCCGGGATCGTGCGGCTCCATCGCCTAA
TTTATGTGGCGGACGTCTGCCCGGTTTTAGCCGTGGAGGCTCTGAAAATG
GCCATTACTTACGTTCAAACCACCTACAACGTAAATCTCTACCAAGTGCT
GCACAAGCGCTTGAGTGATCTAAACGCTGGAAATGCGCCTGCGCCACCAG
CAAATGCTGGCGGAGATCAGGCAGGAGCAGCGGCTCCCGGTCCCCTGGCA
GCTGCTCCCCTTCCGGATATCGCGGCACAACCTGTGGCTCAGGCTCAAGG
ACAGGCTCAACCCGCTGTCGAAAAGGATGCCTTCGCCTACGATGCCGCTT
GGGTAGACACCAAGATGAAGAAGGCGGCTCTTAAGCTGGAGAAACTGGAC
TCAGACCTCAAGAACTACAAGTCCAATTCGATCAAGGAGAGCATCCGGAG
GGGCCACGATGACCTGGCTGACCACTACCTCAGTTGTGGCGACCTCACCA
ATGCCCTGAAGTGCTATTCTCGGGCCAGAGACTACTGCACTAGTGGCAAG
CATGTGGTAAACATGTGCCTTAACGTGATCAAGGTGTCAATTTATCTCCA
GAATTGGGCCCATGTGATGAGCTACATATCCAAGGCGGAAAGCACCCCGG
ACTTCGCCGAGGGCTCCAAGGAGGCTAATGCCCAGGTTCATACTCGCCTT
GAATGCGCTGCTGGTCTGGCGGAACTGCAGCAAAAGAAATATAAGGTGGC
CGCTAAGCATTTCCTCAATGCTAACTTCGATCACTGCGACTTTCCCGAAA
TGATCTCCACCAGCAATGTGGCGGTCTATGGTGGCCTCTGCGCCCTGGCC
ACCTTTGATCGACAGGAGCTTAAGCGTCTGGTCATCGCCTCTACATCCTT
TAAATTGTTCTTAGAACTGGAGCCCCAACTCAGGGATATTATTTTCAAGT
TCTACGAAAGTAAATACGCCTCATGTCTGACGCTTCTGGATGAGATTAGG
GACAACCTGCTGGTTGACATGTACATTGCGCCCCATGTAACCACTCTGTA
TACCAAGATACGCAATCGCGCGCTAATCCAGTACTTTAGCCCCTATATGT
CAGCTGATATGCACAAAATGGCCATGGCATTTAACTCGTCGGTGGGCGAT
CTGGAGAACGAGGTGATGCAGTTGATATTAGACGGACAGATCCAGGCGCG
TATTGACTCCCACAATAAGATCCTGTTCGCCAAGGAGGCGGATCAAAGGA
ACAGCACCTTTGAGCGGGCTTTGATCATGGGCAAGCAGTACCAGCGTCAT
ACCCGCATGCTTGTTCTTCGTGCTGCAATGCTCAAGAGCCACATCCACGT
GAAGAGCATTTCCCGGGAGGGTGGAAGCAACCACGGCGCCGAACTTTGCG
TCTCCGCCGGATCCTCGACAACTGCTCAACTCGCCCGAATCGCAAGCTTT
CTAGACCAT
BO09339.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:08:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CSN1b-RA | 1578 | CG3889-PA | 1..1575 | 17..1591 | 7875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:08:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CSN1b-RA | 1802 | CG3889-RA | 137..1711 | 17..1591 | 7875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:08:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18903148..18904691 | 1591..48 | 7720 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 02:08:49 has no hits.
BO09339.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:03 Download gff for
BO09339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN1b-RA | 1..1578 | 17..1592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:51 Download gff for
BO09339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN1b-RA | 220..1804 | 9..1597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:37 Download gff for
BO09339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN1b-RA | 137..1711 | 17..1593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:03 Download gff for
BO09339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN1b-RA | 220..1804 | 9..1597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:38:24 Download gff for
BO09339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN1b-RA | 137..1711 | 17..1593 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:38:24 Download gff for
BO09339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18903146..18904689 | 50..1593 | 99 | <- | Minus |
3L | 18904762..18904794 | 17..49 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:37 Download gff for
BO09339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18896246..18897789 | 50..1593 | 99 | <- | Minus |
arm_3L | 18897862..18897894 | 17..49 | 100 | | Minus |
BO09339.pep Sequence
Translation from 16 to 1609
> BO09339.pep
MPVLPMPPLMQNAVEPMQVDIAPPNEDNENNEEQQIVVENPSIDLEVYAN
QYAGIVRLHRLIYVADVCPVLAVEALKMAITYVQTTYNVNLYQVLHKRLS
DLNAGNAPAPPANAGGDQAGAAAPGPLAAAPLPDIAAQPVAQAQGQAQPA
VEKDAFAYDAAWVDTKMKKAALKLEKLDSDLKNYKSNSIKESIRRGHDDL
ADHYLSCGDLTNALKCYSRARDYCTSGKHVVNMCLNVIKVSIYLQNWAHV
MSYISKAESTPDFAEGSKEANAQVHTRLECAAGLAELQQKKYKVAAKHFL
NANFDHCDFPEMISTSNVAVYGGLCALATFDRQELKRLVIASTSFKLFLE
LEPQLRDIIFKFYESKYASCLTLLDEIRDNLLVDMYIAPHVTTLYTKIRN
RALIQYFSPYMSADMHKMAMAFNSSVGDLENEVMQLILDGQIQARIDSHN
KILFAKEADQRNSTFERALIMGKQYQRHTRMLVLRAAMLKSHIHVKSISR
EGGSNHGAELCVSAGSSTTAQLARIASFLDH
BO09339.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CSN1b-PA | 525 | CG3889-PA | 1..525 | 1..525 | 2696 | 100 | Plus |
CSN1a-PA | 364 | CG4697-PA | 5..346 | 39..403 | 642 | 38.4 | Plus |
Rpn7-PA | 389 | CG5378-PA | 79..373 | 172..472 | 187 | 20.6 | Plus |