Clone BO09339 Report

Search the DGRC for BO09339

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:93
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCSN1b-RA
Protein status:BO09339.pep: validated full length
Sequenced Size:1609

Clone Sequence Records

BO09339.3prime Sequence

863 bp (853 high quality bases) assembled on 2006-01-18

> BO09339.3prime
ATGGTCTAGAAAGCTTGCGATTCGGGCGAGTTGAGCAGTTGTCGAGGATC
CGGCGGAGACGCAAAGTTCGGCGCCGTGGTTGCTTCCACCCTCCCGGGAA
ATGCTCTTCACGTGGATGTGGCTCTTGAGCATTGCAGCACGAAGAACAAG
CATGCGGGTATGACGCTGGTACTGCTTGCCCATGATCAAAGCCCGCTCAA
AGGTGCTGTTCCTTTGATCCGCCTCCTTGGCGAACAGGATCTTATTGTGG
GAGTCAATACGCGCCTGGATCTGTCCGTCTAATATCAACTGCATCACCTC
GTTCTCCAGATCGCCCACCGACGAGTTAAATGCCATGGCCATTTTGTGCA
TATCAGCTGACATATAGGGGCTAAAGTACTGGATTAGCGCGCGATTGCGT
ATCTTGGTATACAGAGTGGTTACATGGGGCGCAATGTACATGTCAACCAG
CAGGTTGTCCCTAATCTCATCCAGAAGCGTCAGACATGAGGCGTATTTAC
TTTCGTAGAACTTGAAAATAATATCCCTGAGTTGGGGCTCCAGTTCTAAG
AACAATTTAAAGGATGTAGAGGCGATGACCAGACGCTTAAGCTCCTGTCG
ATCAAAGGTGGCCAGGGCGCAGAGGCCACCATAGACCGCCACATTGCTGG
TGGAGATCATTTCGGGAAAGTCGCAGTGATCGAAGTTAGCATTGAGGAAA
TGCTTAGCGGCCACCTTATATTTCTTTTGCTGCAGTTCCGCCAGACCAGC
AGCGCATTCAAGGCGAGTATGAACCTGGGCATTAGCCTCCTTGGAGCCCT
CGGCGAAGTCCGGGGTGCTTTCCGCCTTGGATATGTAGCTCATCACATGG
GCCCATTTCTGGA

BO09339.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG3889-PA 1578 CSN1b-RA 731..1575 863..19 4200 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
CSN1b-RA 1802 CG3889-RA 867..1711 863..19 4210 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:11:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18903148..18903992 19..863 4210 99.9 Plus
Blast to na_te.dros performed on 2015-02-11 11:11:15 has no hits.

BO09339.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:08:02 Download gff for BO09339.3prime
Subject Subject Range Query Range Percent Splice Strand
CSN1b-PA 732..1578 18..862 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:10:52 Download gff for BO09339.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3889-PA 732..1578 18..862 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:48:54 Download gff for BO09339.3prime
Subject Subject Range Query Range Percent Splice Strand
CSN1b-RA 868..1717 13..862 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:24 Download gff for BO09339.3prime
Subject Subject Range Query Range Percent Splice Strand
CSN1b-RA 868..1717 13..862 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:24 Download gff for BO09339.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18903144..18903991 15..862 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:48:54 Download gff for BO09339.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18896244..18897091 15..862 99   Plus

BO09339.5prime Sequence

891 bp (823 high quality bases) assembled on 2006-01-18

> BO09339.5prime
GAAGTTATCAGTCGACATGCCCGTGCTGCCGATGCCACCACTCATGCAGA
ACGCCGTGGAGCCGATGCAAGTGGACATCGCGCCGCCGAACGAGGACAAC
GAAAACAACGAGGAGCAGCAGATTGTGGTGGAGAACCCCAGCATCGATCT
CGAAGTGTACGCCAACCAATATGCCGGGATCGTGCGGCTCCATCGCCTAA
TTTATGTGGCGGACGTCTGCCCGGTTTTAGCCGTGGAGGCTCTGAAAATG
GCCATTACTTACGTTCAAACCACCTACAACGTAAATCTCTACCAAGTGCT
GCACAAGCGCTTGAGTGATCTAAACGCTGGAAATGCGCCTGCGCCACCAG
CAAATGCTGGCGGAGATCAGGCAGGAGCAGCGGCTCCCGGTCCCCTGGCA
GCTGCTCCCCTTCCGGATATCGCGGCACAACCTGTGGCTCAGGCTCAAGG
ACAGGCTCAACCCGCTGTCGAAAAGGATGCCTTCGCCTACGATGCCGCTT
GGGTAGACACCAAGATGAAGAAGGCGGCTCTTAAGCTGGAGAAACTGGAC
TCAGACCTCAAGAACTACAAGTCCAATTCGATCAAGGAGAGCATCCGGAG
GGGCCACGATGACCTGGCTGACCACTACCTCAGTTGTGGCGACCTCACCA
ATGCCCTGAAGTGCTATTCTCGGGCCAGAGACTACTGCACTAGTGGCAAG
CATGTGGTAAACATGTGCCTTAACGTGATCAAGGTGTCAATTTATCTCCA
GAATTGGGCCCATGTGATGAGCTACATATCCAAGGCGGAAAGCACCCCGG
ACTTCGCCGAGGGCTCCAAGGAGGCTAATGCCCAGGTTCATACTCGCCCT
TGATGCGCTGCTGGTCTGGCGGAACTGCAGCAAAGAAATAT

BO09339.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG3889-PA 1578 CSN1b-RA 1..832 17..848 4160 100 Plus
CG3889-PA 1578 CSN1b-RA 837..868 853..884 160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
CSN1b-RA 1802 CG3889-RA 137..1012 17..891 4310 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:18:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18903855..18904691 884..48 4140 99.6 Minus
Blast to na_te.dros performed on 2015-02-12 20:18:38 has no hits.

BO09339.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:08:03 Download gff for BO09339.5prime
Subject Subject Range Query Range Percent Splice Strand
CSN1b-PA 1..876 17..891 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:10:53 Download gff for BO09339.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3889-PA 1..876 17..891 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:26:02 Download gff for BO09339.5prime
Subject Subject Range Query Range Percent Splice Strand
CSN1b-RA 133..1012 9..891 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:38:14 Download gff for BO09339.5prime
Subject Subject Range Query Range Percent Splice Strand
CSN1b-RA 133..1012 9..891 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:38:14 Download gff for BO09339.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18903847..18904689 50..891 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:26:02 Download gff for BO09339.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18896947..18897789 50..891 99 <- Minus

BO09339.complete Sequence

1609 bp (1609 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631479

> BO09339.complete
GAAGTTATCAGTCGACATGCCCGTGCTGCCGATGCCACCACTCATGCAGA
ACGCCGTGGAGCCGATGCAAGTGGACATCGCGCCGCCGAACGAGGACAAC
GAAAACAACGAGGAGCAGCAGATTGTGGTGGAGAACCCCAGCATCGATCT
CGAAGTGTACGCCAACCAATATGCCGGGATCGTGCGGCTCCATCGCCTAA
TTTATGTGGCGGACGTCTGCCCGGTTTTAGCCGTGGAGGCTCTGAAAATG
GCCATTACTTACGTTCAAACCACCTACAACGTAAATCTCTACCAAGTGCT
GCACAAGCGCTTGAGTGATCTAAACGCTGGAAATGCGCCTGCGCCACCAG
CAAATGCTGGCGGAGATCAGGCAGGAGCAGCGGCTCCCGGTCCCCTGGCA
GCTGCTCCCCTTCCGGATATCGCGGCACAACCTGTGGCTCAGGCTCAAGG
ACAGGCTCAACCCGCTGTCGAAAAGGATGCCTTCGCCTACGATGCCGCTT
GGGTAGACACCAAGATGAAGAAGGCGGCTCTTAAGCTGGAGAAACTGGAC
TCAGACCTCAAGAACTACAAGTCCAATTCGATCAAGGAGAGCATCCGGAG
GGGCCACGATGACCTGGCTGACCACTACCTCAGTTGTGGCGACCTCACCA
ATGCCCTGAAGTGCTATTCTCGGGCCAGAGACTACTGCACTAGTGGCAAG
CATGTGGTAAACATGTGCCTTAACGTGATCAAGGTGTCAATTTATCTCCA
GAATTGGGCCCATGTGATGAGCTACATATCCAAGGCGGAAAGCACCCCGG
ACTTCGCCGAGGGCTCCAAGGAGGCTAATGCCCAGGTTCATACTCGCCTT
GAATGCGCTGCTGGTCTGGCGGAACTGCAGCAAAAGAAATATAAGGTGGC
CGCTAAGCATTTCCTCAATGCTAACTTCGATCACTGCGACTTTCCCGAAA
TGATCTCCACCAGCAATGTGGCGGTCTATGGTGGCCTCTGCGCCCTGGCC
ACCTTTGATCGACAGGAGCTTAAGCGTCTGGTCATCGCCTCTACATCCTT
TAAATTGTTCTTAGAACTGGAGCCCCAACTCAGGGATATTATTTTCAAGT
TCTACGAAAGTAAATACGCCTCATGTCTGACGCTTCTGGATGAGATTAGG
GACAACCTGCTGGTTGACATGTACATTGCGCCCCATGTAACCACTCTGTA
TACCAAGATACGCAATCGCGCGCTAATCCAGTACTTTAGCCCCTATATGT
CAGCTGATATGCACAAAATGGCCATGGCATTTAACTCGTCGGTGGGCGAT
CTGGAGAACGAGGTGATGCAGTTGATATTAGACGGACAGATCCAGGCGCG
TATTGACTCCCACAATAAGATCCTGTTCGCCAAGGAGGCGGATCAAAGGA
ACAGCACCTTTGAGCGGGCTTTGATCATGGGCAAGCAGTACCAGCGTCAT
ACCCGCATGCTTGTTCTTCGTGCTGCAATGCTCAAGAGCCACATCCACGT
GAAGAGCATTTCCCGGGAGGGTGGAAGCAACCACGGCGCCGAACTTTGCG
TCTCCGCCGGATCCTCGACAACTGCTCAACTCGCCCGAATCGCAAGCTTT
CTAGACCAT

BO09339.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
CSN1b-RA 1578 CG3889-PA 1..1575 17..1591 7875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:08:51
Subject Length Description Subject Range Query Range Score Percent Strand
CSN1b-RA 1802 CG3889-RA 137..1711 17..1591 7875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:08:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18903148..18904691 1591..48 7720 100 Minus
Blast to na_te.dros performed on 2014-11-27 02:08:49 has no hits.

BO09339.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:03 Download gff for BO09339.complete
Subject Subject Range Query Range Percent Splice Strand
CSN1b-RA 1..1578 17..1592 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:51 Download gff for BO09339.complete
Subject Subject Range Query Range Percent Splice Strand
CSN1b-RA 220..1804 9..1597 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:37 Download gff for BO09339.complete
Subject Subject Range Query Range Percent Splice Strand
CSN1b-RA 137..1711 17..1593 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:03 Download gff for BO09339.complete
Subject Subject Range Query Range Percent Splice Strand
CSN1b-RA 220..1804 9..1597 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:38:24 Download gff for BO09339.complete
Subject Subject Range Query Range Percent Splice Strand
CSN1b-RA 137..1711 17..1593 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:38:24 Download gff for BO09339.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18903146..18904689 50..1593 99 <- Minus
3L 18904762..18904794 17..49 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:37 Download gff for BO09339.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18896246..18897789 50..1593 99 <- Minus
arm_3L 18897862..18897894 17..49 100   Minus

BO09339.pep Sequence

Translation from 16 to 1609

> BO09339.pep
MPVLPMPPLMQNAVEPMQVDIAPPNEDNENNEEQQIVVENPSIDLEVYAN
QYAGIVRLHRLIYVADVCPVLAVEALKMAITYVQTTYNVNLYQVLHKRLS
DLNAGNAPAPPANAGGDQAGAAAPGPLAAAPLPDIAAQPVAQAQGQAQPA
VEKDAFAYDAAWVDTKMKKAALKLEKLDSDLKNYKSNSIKESIRRGHDDL
ADHYLSCGDLTNALKCYSRARDYCTSGKHVVNMCLNVIKVSIYLQNWAHV
MSYISKAESTPDFAEGSKEANAQVHTRLECAAGLAELQQKKYKVAAKHFL
NANFDHCDFPEMISTSNVAVYGGLCALATFDRQELKRLVIASTSFKLFLE
LEPQLRDIIFKFYESKYASCLTLLDEIRDNLLVDMYIAPHVTTLYTKIRN
RALIQYFSPYMSADMHKMAMAFNSSVGDLENEVMQLILDGQIQARIDSHN
KILFAKEADQRNSTFERALIMGKQYQRHTRMLVLRAAMLKSHIHVKSISR
EGGSNHGAELCVSAGSSTTAQLARIASFLDH

BO09339.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
CSN1b-PA 525 CG3889-PA 1..525 1..525 2696 100 Plus
CSN1a-PA 364 CG4697-PA 5..346 39..403 642 38.4 Plus
Rpn7-PA 389 CG5378-PA 79..373 172..472 187 20.6 Plus