Clone BO09341 Report

Search the DGRC for BO09341

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:93
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG4702-RA
Protein status:BO09341.pep: validated full length
Sequenced Size:892

Clone Sequence Records

BO09341.3prime Sequence

882 bp (814 high quality bases) assembled on 2006-01-18

> BO09341.3prime
ATGGTCTAGAAAGCTTGCGACCTCGTTGCACTCCAGATAGATCTGGCGAC
AGTCGAATCCGGAGCGACCTCTACGTCCGGCGTCGTACAGCTCCTCGAAG
TTGCTGCCACTGGTGCGGCCTAGGACATAGCTGGTGGCATAAGATCCCAG
CTGGCAGAAGATGCTGCTGCCGCCGATCTCACGGACGCACTCCGTATTGG
CGTCGCACATGTACCGCTGCGTGCACTTGTCCTCCGAGGTGCGATAGGTT
CGGACGTAGCCCTTCATCAGCGAGATTCCGGCGACGACGGCGTCGCTCAC
CGAGTCCCGCTTGCCCATGGAGCGGGCGGTCAGGGAGCGGTGCGAGAAGG
AGGTCTTCAGGGCGTCCAGCAGGTTCATCACGATCTGAATGAACTGCATG
GGAGATCCACCGTTGTCGACCTTATCGATGCCATCGCTAGGGGCTCCGCC
GCCCAGCAAGGTGTTGATGATGCGAAGACCCATGGAGATAACATTCGCCC
AGGGACTGCCGCCCAAGCCAATGGAACTATCCACATCATCGGACTTGGTT
GGTGAGTTGACGGCTCCGTTGAAGAACATGGTCATCACGGTGGATAGCAT
GTTAGACCAGGTGAAACCGCCGGGTCCTCCCACACTCTCTTGGATCTGAT
TGGTCTCCAAATCATCCTCGATATCGTCCAGAGCCACCTTCTTCGAGGCA
TTCGGCTTCACCGCAAACTTTCTGGCCACACTCTCATCCCGGTAGACAGG
TGACTGGGTCACCTGGTGCTGCCTCTGATAGACCTCCTGCTGTGGAAATG
CGTAGGTCATCAGCAGACAATTGCTGGCTACTATGGAGAGCAGCAGGTAG
GCGTGTACTTTCCGTTGATTCCACATGTCGAC

BO09341.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG4702-PA 861 CG4702-RA 1..858 876..19 4290 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4702-RC 1305 CG4702-RC 266..1124 877..19 4295 100 Minus
CG4702-RA 1375 CG4702-RA 336..1194 877..19 4295 100 Minus
CG4702-RD 1398 CG4702-RD 275..758 877..394 2420 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:00:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12123461..12123860 478..877 2000 100 Plus
3R 32079331 3R 12122171..12122424 143..396 1270 100 Plus
3R 32079331 3R 12121764..12121887 19..142 620 100 Plus
3R 32079331 3R 12123293..12123379 394..480 435 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:00:37 has no hits.

BO09341.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:08:07 Download gff for BO09341.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4702-PA 1..861 18..876 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:10:58 Download gff for BO09341.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4702-PA 1..861 18..876 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:17:56 Download gff for BO09341.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4702-RA 331..1201 11..882 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:13:30 Download gff for BO09341.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4702-RA 331..1201 11..882 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:13:30 Download gff for BO09341.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12121757..12121887 11..142 96 <- Plus
3R 12122171..12122421 143..393 100 <- Plus
3R 12123293..12123378 394..479 100 <- Plus
3R 12123463..12123865 480..882 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:17:56 Download gff for BO09341.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7947479..7947609 11..142 96 <- Plus
arm_3R 7947893..7948143 143..393 100 <- Plus
arm_3R 7949015..7949100 394..479 100 <- Plus
arm_3R 7949185..7949587 480..882 99   Plus

BO09341.5prime Sequence

890 bp (769 high quality bases) assembled on 2006-01-18

> BO09341.5prime
GAAGTTATCAGTCGACATGTGGAATCAACGGAAAGTACACGCCTACCTGC
TGCTCTCCATAGTAGCCAGCAATTGTCTGCTGATGACCTACGCATTTCCA
CAGCAGGAGGTCTATCAGAGGCAGCACCAGGTGACCCAGTCACCTGTCTA
CCGGGATGAGAGTGTGGCCAGAAAGTTTGCGGTGAAGCCGAATGCCTCGA
AGAAGGTGGCTCTGGACGATATCGAGGATGATTTGGAGACCAATCAGATC
CAAGAGAGTGTGGGAGGACCCGGCGGTTTCACCTGGTCTAACATGCTATC
CACCGTGATGACCATGTTCTTCAACGGAGCCGTCAACTCACCAACCAAGT
CCGATGATGTGGATAGTTCCATTGGCTTGGGCGGCAGTCCCTGGGCGAAT
GTTATCTCCATGGGTCTTCGCATCATCAACACCTTGCTGGGCGGCGGAGC
CCCTAGCGATGGCATCGATAAGGTCGACAACGGTGGATCTCCCATGCAGT
TCATTCAGATCGTGATGAACCTGCTGGACGCCCTGAAGACCTCCTTCTCG
CACCGCTCCCTGACCGCCCGCTCCATGGGCAAGCGGGACTCGGTGAGCGA
CGCCGTCGTCGCCGGAATCTCGCTGATGAAGGGCTACGTCCGAACCTATC
GCACCTCGGAGGACAAGTGCACGCAGCGGTACATGTGCGACGCCAATACG
GAGTGCGTCCGTGAGATCGGCGGCAGCAGCATCTTCTGCCAGCTGGGATC
TTATGCCACCAGCTATGTCCTAAGCCGCACCAGTGGCAGCAACTTCGAGG
AGCTGTACGACGCCGGACGTAGAGGTCGCTCCGGATTCGACTGTCGCCAG
ATCTATCTGGAGTGCAACGAGGTCGCAAGCTTTCTAGACC

BO09341.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4702-PA 861 CG4702-RA 1..858 17..874 4265 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:27:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4702-RC 1305 CG4702-RC 259..1124 9..874 4285 99.7 Plus
CG4702-RA 1375 CG4702-RA 329..1194 9..874 4285 99.7 Plus
CG4702-RD 1398 CG4702-RD 268..758 9..499 2425 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:27:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12123461..12123867 415..9 2005 99.5 Minus
3R 32079331 3R 12122171..12122424 750..497 1270 100 Minus
3R 32079331 3R 12121764..12121887 874..751 605 99.2 Minus
3R 32079331 3R 12123293..12123379 499..413 435 100 Minus
Blast to na_te.dros performed on 2015-02-10 02:27:40 has no hits.

BO09341.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:08:08 Download gff for BO09341.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4702-PA 1..861 17..875 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:10:59 Download gff for BO09341.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4702-PA 1..861 17..875 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:38:55 Download gff for BO09341.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4702-RA 326..1201 3..882 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:08:28 Download gff for BO09341.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4702-RA 326..1201 3..882 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:08:28 Download gff for BO09341.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12121757..12121887 751..882 96 <- Minus
3R 12122171..12122421 500..750 100 <- Minus
3R 12123293..12123378 414..499 100 <- Minus
3R 12123463..12123870 5..413 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:38:55 Download gff for BO09341.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7947893..7948143 500..750 100 <- Minus
arm_3R 7949015..7949100 414..499 100 <- Minus
arm_3R 7947479..7947609 751..882 96 <- Minus
arm_3R 7949185..7949592 5..413 99   Minus

BO09341.complete Sequence

892 bp (892 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631480

> BO09341.complete
GAAGTTATCAGTCGACATGTGGAATCAACGGAAAGTACACGCCTACCTGC
TGCTCTCCATAGTAGCCAGCAATTGTCTGCTGATGACCTACGCATTTCCA
CAGCAGGAGGTCTATCAGAGGCAGCACCAGGTGACCCAGTCACCTGTCTA
CCGGGATGAGAGTGTGGCCAGAAAGTTTGCGGTGAAGCCGAATGCCTCGA
AGAAGGTGGCTCTGGACGATATCGAGGATGATTTGGAGACCAATCAGATC
CAAGAGAGTGTGGGAGGACCCGGCGGTTTCACCTGGTCTAACATGCTATC
CACCGTGATGACCATGTTCTTCAACGGAGCCGTCAACTCACCAACCAAGT
CCGATGATGTGGATAGTTCCATTGGCTTGGGCGGCAGTCCCTGGGCGAAT
GTTATCTCCATGGGTCTTCGCATCATCAACACCTTGCTGGGCGGCGGAGC
CCCTAGCGATGGCATCGATAAGGTCGACAACGGTGGATCTCCCATGCAGT
TCATTCAGATCGTGATGAACCTGCTGGACGCCCTGAAGACCTCCTTCTCG
CACCGCTCCCTGACCGCCCGCTCCATGGGCAAGCGGGACTCGGTGAGCGA
CGCCGTCGTCGCCGGAATCTCGCTGATGAAGGGCTACGTCCGAACCTATC
GCACCTCGGAGGACAAGTGCACGCAGCGGTACATGTGCGACGCCAATACG
GAGTGCGTCCGTGAGATCGGCGGCAGCAGCATCTTCTGCCAGCTGGGATC
TTATGCCACCAGCTATGTCCTAGGCCGCACCAGTGGCAGCAACTTCGAGG
AGCTGTACGACGCCGGACGTAGAGGTCGCTCCGGATTCGACTGTCGCCAG
ATCTATCTGGAGTGCAACGAGGTCGCAAGCTTTCTAGACCAT

BO09341.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:27:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4702-RC 861 CG4702-PC 1..858 17..874 4290 100 Plus
CG4702-RA 861 CG4702-PA 1..858 17..874 4290 100 Plus
CG4702-RD 945 CG4702-PD 1..483 17..499 2415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:27:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4702-RC 1305 CG4702-RC 259..1124 9..874 4300 99.8 Plus
CG4702-RA 1375 CG4702-RA 329..1194 9..874 4300 99.8 Plus
CG4702-RD 1398 CG4702-RD 268..758 9..499 2425 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:27:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12123461..12123867 415..9 2005 99.5 Minus
3R 32079331 3R 12122171..12122424 750..497 1270 100 Minus
3R 32079331 3R 12121764..12121887 874..751 620 100 Minus
3R 32079331 3R 12123293..12123379 499..413 435 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:27:17 has no hits.

BO09341.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:47 Download gff for BO09341.complete
Subject Subject Range Query Range Percent Splice Strand
CG4702-RA 1..861 17..875 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:25 Download gff for BO09341.complete
Subject Subject Range Query Range Percent Splice Strand
CG4702-RA 322..1197 3..882 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:22 Download gff for BO09341.complete
Subject Subject Range Query Range Percent Splice Strand
CG4702-RA 337..1194 17..876 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:48 Download gff for BO09341.complete
Subject Subject Range Query Range Percent Splice Strand
CG4702-RA 322..1197 3..882 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:07 Download gff for BO09341.complete
Subject Subject Range Query Range Percent Splice Strand
CG4702-RA 337..1194 17..876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:07 Download gff for BO09341.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12122171..12122421 500..750 100 <- Minus
3R 12123293..12123378 414..499 100 <- Minus
3R 12121762..12121887 751..876 98 <- Minus
3R 12123463..12123859 17..413 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:22 Download gff for BO09341.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7947484..7947609 751..876 98 <- Minus
arm_3R 7947893..7948143 500..750 100 <- Minus
arm_3R 7949015..7949100 414..499 100 <- Minus
arm_3R 7949185..7949581 17..413 100   Minus

BO09341.pep Sequence

Translation from 16 to 892

> BO09341.pep
MWNQRKVHAYLLLSIVASNCLLMTYAFPQQEVYQRQHQVTQSPVYRDESV
ARKFAVKPNASKKVALDDIEDDLETNQIQESVGGPGGFTWSNMLSTVMTM
FFNGAVNSPTKSDDVDSSIGLGGSPWANVISMGLRIINTLLGGGAPSDGI
DKVDNGGSPMQFIQIVMNLLDALKTSFSHRSLTARSMGKRDSVSDAVVAG
ISLMKGYVRTYRTSEDKCTQRYMCDANTECVREIGGSSIFCQLGSYATSY
VLGRTSGSNFEELYDAGRRGRSGFDCRQIYLECNEVASFLDH

BO09341.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG4702-PC 286 CG4702-PC 1..286 1..286 1486 100 Plus
CG4702-PA 286 CG4702-PA 1..286 1..286 1486 100 Plus
CG4702-PD 314 CG4702-PD 1..314 1..286 1447 91.1 Plus
CG4702-PB 314 CG4702-PB 1..314 1..286 1447 91.1 Plus