Clone Sequence Records
BO09341.3prime Sequence
882 bp (814 high quality bases) assembled on 2006-01-18
> BO09341.3prime
ATGGTCTAGAAAGCTTGCGACCTCGTTGCACTCCAGATAGATCTGGCGAC
AGTCGAATCCGGAGCGACCTCTACGTCCGGCGTCGTACAGCTCCTCGAAG
TTGCTGCCACTGGTGCGGCCTAGGACATAGCTGGTGGCATAAGATCCCAG
CTGGCAGAAGATGCTGCTGCCGCCGATCTCACGGACGCACTCCGTATTGG
CGTCGCACATGTACCGCTGCGTGCACTTGTCCTCCGAGGTGCGATAGGTT
CGGACGTAGCCCTTCATCAGCGAGATTCCGGCGACGACGGCGTCGCTCAC
CGAGTCCCGCTTGCCCATGGAGCGGGCGGTCAGGGAGCGGTGCGAGAAGG
AGGTCTTCAGGGCGTCCAGCAGGTTCATCACGATCTGAATGAACTGCATG
GGAGATCCACCGTTGTCGACCTTATCGATGCCATCGCTAGGGGCTCCGCC
GCCCAGCAAGGTGTTGATGATGCGAAGACCCATGGAGATAACATTCGCCC
AGGGACTGCCGCCCAAGCCAATGGAACTATCCACATCATCGGACTTGGTT
GGTGAGTTGACGGCTCCGTTGAAGAACATGGTCATCACGGTGGATAGCAT
GTTAGACCAGGTGAAACCGCCGGGTCCTCCCACACTCTCTTGGATCTGAT
TGGTCTCCAAATCATCCTCGATATCGTCCAGAGCCACCTTCTTCGAGGCA
TTCGGCTTCACCGCAAACTTTCTGGCCACACTCTCATCCCGGTAGACAGG
TGACTGGGTCACCTGGTGCTGCCTCTGATAGACCTCCTGCTGTGGAAATG
CGTAGGTCATCAGCAGACAATTGCTGGCTACTATGGAGAGCAGCAGGTAG
GCGTGTACTTTCCGTTGATTCCACATGTCGAC
BO09341.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4702-PA | 861 | CG4702-RA | 1..858 | 876..19 | 4290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:00:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4702-RC | 1305 | CG4702-RC | 266..1124 | 877..19 | 4295 | 100 | Minus |
CG4702-RA | 1375 | CG4702-RA | 336..1194 | 877..19 | 4295 | 100 | Minus |
CG4702-RD | 1398 | CG4702-RD | 275..758 | 877..394 | 2420 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:00:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12123461..12123860 | 478..877 | 2000 | 100 | Plus |
3R | 32079331 | 3R | 12122171..12122424 | 143..396 | 1270 | 100 | Plus |
3R | 32079331 | 3R | 12121764..12121887 | 19..142 | 620 | 100 | Plus |
3R | 32079331 | 3R | 12123293..12123379 | 394..480 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:00:37 has no hits.
BO09341.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:08:07 Download gff for
BO09341.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4702-PA | 1..861 | 18..876 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:10:58 Download gff for
BO09341.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4702-PA | 1..861 | 18..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:17:56 Download gff for
BO09341.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4702-RA | 331..1201 | 11..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:13:30 Download gff for
BO09341.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4702-RA | 331..1201 | 11..882 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:13:30 Download gff for
BO09341.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12121757..12121887 | 11..142 | 96 | <- | Plus |
3R | 12122171..12122421 | 143..393 | 100 | <- | Plus |
3R | 12123293..12123378 | 394..479 | 100 | <- | Plus |
3R | 12123463..12123865 | 480..882 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:17:56 Download gff for
BO09341.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7947479..7947609 | 11..142 | 96 | <- | Plus |
arm_3R | 7947893..7948143 | 143..393 | 100 | <- | Plus |
arm_3R | 7949015..7949100 | 394..479 | 100 | <- | Plus |
arm_3R | 7949185..7949587 | 480..882 | 99 | | Plus |
BO09341.5prime Sequence
890 bp (769 high quality bases) assembled on 2006-01-18
> BO09341.5prime
GAAGTTATCAGTCGACATGTGGAATCAACGGAAAGTACACGCCTACCTGC
TGCTCTCCATAGTAGCCAGCAATTGTCTGCTGATGACCTACGCATTTCCA
CAGCAGGAGGTCTATCAGAGGCAGCACCAGGTGACCCAGTCACCTGTCTA
CCGGGATGAGAGTGTGGCCAGAAAGTTTGCGGTGAAGCCGAATGCCTCGA
AGAAGGTGGCTCTGGACGATATCGAGGATGATTTGGAGACCAATCAGATC
CAAGAGAGTGTGGGAGGACCCGGCGGTTTCACCTGGTCTAACATGCTATC
CACCGTGATGACCATGTTCTTCAACGGAGCCGTCAACTCACCAACCAAGT
CCGATGATGTGGATAGTTCCATTGGCTTGGGCGGCAGTCCCTGGGCGAAT
GTTATCTCCATGGGTCTTCGCATCATCAACACCTTGCTGGGCGGCGGAGC
CCCTAGCGATGGCATCGATAAGGTCGACAACGGTGGATCTCCCATGCAGT
TCATTCAGATCGTGATGAACCTGCTGGACGCCCTGAAGACCTCCTTCTCG
CACCGCTCCCTGACCGCCCGCTCCATGGGCAAGCGGGACTCGGTGAGCGA
CGCCGTCGTCGCCGGAATCTCGCTGATGAAGGGCTACGTCCGAACCTATC
GCACCTCGGAGGACAAGTGCACGCAGCGGTACATGTGCGACGCCAATACG
GAGTGCGTCCGTGAGATCGGCGGCAGCAGCATCTTCTGCCAGCTGGGATC
TTATGCCACCAGCTATGTCCTAAGCCGCACCAGTGGCAGCAACTTCGAGG
AGCTGTACGACGCCGGACGTAGAGGTCGCTCCGGATTCGACTGTCGCCAG
ATCTATCTGGAGTGCAACGAGGTCGCAAGCTTTCTAGACC
BO09341.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4702-PA | 861 | CG4702-RA | 1..858 | 17..874 | 4265 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:27:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4702-RC | 1305 | CG4702-RC | 259..1124 | 9..874 | 4285 | 99.7 | Plus |
CG4702-RA | 1375 | CG4702-RA | 329..1194 | 9..874 | 4285 | 99.7 | Plus |
CG4702-RD | 1398 | CG4702-RD | 268..758 | 9..499 | 2425 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:27:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12123461..12123867 | 415..9 | 2005 | 99.5 | Minus |
3R | 32079331 | 3R | 12122171..12122424 | 750..497 | 1270 | 100 | Minus |
3R | 32079331 | 3R | 12121764..12121887 | 874..751 | 605 | 99.2 | Minus |
3R | 32079331 | 3R | 12123293..12123379 | 499..413 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 02:27:40 has no hits.
BO09341.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:08:08 Download gff for
BO09341.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4702-PA | 1..861 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:10:59 Download gff for
BO09341.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4702-PA | 1..861 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:38:55 Download gff for
BO09341.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4702-RA | 326..1201 | 3..882 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:08:28 Download gff for
BO09341.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4702-RA | 326..1201 | 3..882 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:08:28 Download gff for
BO09341.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12121757..12121887 | 751..882 | 96 | <- | Minus |
3R | 12122171..12122421 | 500..750 | 100 | <- | Minus |
3R | 12123293..12123378 | 414..499 | 100 | <- | Minus |
3R | 12123463..12123870 | 5..413 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:38:55 Download gff for
BO09341.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7947893..7948143 | 500..750 | 100 | <- | Minus |
arm_3R | 7949015..7949100 | 414..499 | 100 | <- | Minus |
arm_3R | 7947479..7947609 | 751..882 | 96 | <- | Minus |
arm_3R | 7949185..7949592 | 5..413 | 99 | | Minus |
BO09341.complete Sequence
892 bp (892 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631480
> BO09341.complete
GAAGTTATCAGTCGACATGTGGAATCAACGGAAAGTACACGCCTACCTGC
TGCTCTCCATAGTAGCCAGCAATTGTCTGCTGATGACCTACGCATTTCCA
CAGCAGGAGGTCTATCAGAGGCAGCACCAGGTGACCCAGTCACCTGTCTA
CCGGGATGAGAGTGTGGCCAGAAAGTTTGCGGTGAAGCCGAATGCCTCGA
AGAAGGTGGCTCTGGACGATATCGAGGATGATTTGGAGACCAATCAGATC
CAAGAGAGTGTGGGAGGACCCGGCGGTTTCACCTGGTCTAACATGCTATC
CACCGTGATGACCATGTTCTTCAACGGAGCCGTCAACTCACCAACCAAGT
CCGATGATGTGGATAGTTCCATTGGCTTGGGCGGCAGTCCCTGGGCGAAT
GTTATCTCCATGGGTCTTCGCATCATCAACACCTTGCTGGGCGGCGGAGC
CCCTAGCGATGGCATCGATAAGGTCGACAACGGTGGATCTCCCATGCAGT
TCATTCAGATCGTGATGAACCTGCTGGACGCCCTGAAGACCTCCTTCTCG
CACCGCTCCCTGACCGCCCGCTCCATGGGCAAGCGGGACTCGGTGAGCGA
CGCCGTCGTCGCCGGAATCTCGCTGATGAAGGGCTACGTCCGAACCTATC
GCACCTCGGAGGACAAGTGCACGCAGCGGTACATGTGCGACGCCAATACG
GAGTGCGTCCGTGAGATCGGCGGCAGCAGCATCTTCTGCCAGCTGGGATC
TTATGCCACCAGCTATGTCCTAGGCCGCACCAGTGGCAGCAACTTCGAGG
AGCTGTACGACGCCGGACGTAGAGGTCGCTCCGGATTCGACTGTCGCCAG
ATCTATCTGGAGTGCAACGAGGTCGCAAGCTTTCTAGACCAT
BO09341.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:27:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4702-RC | 861 | CG4702-PC | 1..858 | 17..874 | 4290 | 100 | Plus |
CG4702-RA | 861 | CG4702-PA | 1..858 | 17..874 | 4290 | 100 | Plus |
CG4702-RD | 945 | CG4702-PD | 1..483 | 17..499 | 2415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:27:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4702-RC | 1305 | CG4702-RC | 259..1124 | 9..874 | 4300 | 99.8 | Plus |
CG4702-RA | 1375 | CG4702-RA | 329..1194 | 9..874 | 4300 | 99.8 | Plus |
CG4702-RD | 1398 | CG4702-RD | 268..758 | 9..499 | 2425 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:27:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12123461..12123867 | 415..9 | 2005 | 99.5 | Minus |
3R | 32079331 | 3R | 12122171..12122424 | 750..497 | 1270 | 100 | Minus |
3R | 32079331 | 3R | 12121764..12121887 | 874..751 | 620 | 100 | Minus |
3R | 32079331 | 3R | 12123293..12123379 | 499..413 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:27:17 has no hits.
BO09341.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:47 Download gff for
BO09341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4702-RA | 1..861 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:25 Download gff for
BO09341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4702-RA | 322..1197 | 3..882 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:22 Download gff for
BO09341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4702-RA | 337..1194 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:48 Download gff for
BO09341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4702-RA | 322..1197 | 3..882 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:07 Download gff for
BO09341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4702-RA | 337..1194 | 17..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:07 Download gff for
BO09341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12122171..12122421 | 500..750 | 100 | <- | Minus |
3R | 12123293..12123378 | 414..499 | 100 | <- | Minus |
3R | 12121762..12121887 | 751..876 | 98 | <- | Minus |
3R | 12123463..12123859 | 17..413 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:22 Download gff for
BO09341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7947484..7947609 | 751..876 | 98 | <- | Minus |
arm_3R | 7947893..7948143 | 500..750 | 100 | <- | Minus |
arm_3R | 7949015..7949100 | 414..499 | 100 | <- | Minus |
arm_3R | 7949185..7949581 | 17..413 | 100 | | Minus |
BO09341.pep Sequence
Translation from 16 to 892
> BO09341.pep
MWNQRKVHAYLLLSIVASNCLLMTYAFPQQEVYQRQHQVTQSPVYRDESV
ARKFAVKPNASKKVALDDIEDDLETNQIQESVGGPGGFTWSNMLSTVMTM
FFNGAVNSPTKSDDVDSSIGLGGSPWANVISMGLRIINTLLGGGAPSDGI
DKVDNGGSPMQFIQIVMNLLDALKTSFSHRSLTARSMGKRDSVSDAVVAG
ISLMKGYVRTYRTSEDKCTQRYMCDANTECVREIGGSSIFCQLGSYATSY
VLGRTSGSNFEELYDAGRRGRSGFDCRQIYLECNEVASFLDH
BO09341.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4702-PC | 286 | CG4702-PC | 1..286 | 1..286 | 1486 | 100 | Plus |
CG4702-PA | 286 | CG4702-PA | 1..286 | 1..286 | 1486 | 100 | Plus |
CG4702-PD | 314 | CG4702-PD | 1..314 | 1..286 | 1447 | 91.1 | Plus |
CG4702-PB | 314 | CG4702-PB | 1..314 | 1..286 | 1447 | 91.1 | Plus |