Clone BO09350 Report

Search the DGRC for BO09350

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:93
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptDhpD-RA
Protein status:BO09350.pep: validated full length
Sequenced Size:1378

Clone Sequence Records

BO09350.3prime Sequence

901 bp (796 high quality bases) assembled on 2006-01-18

> BO09350.3prime
ATGGTCTAGAAAGCTTGCTTGGTATCCCTGTTTAATACGCTTGCCGGCCA
CGAAAACTTCTACAATGTTGCGGTCACTGCCTGTGTAAATGAACTTCTCC
ACCAGCTCATCGACGCTCAGCCTCCGCAAGGGTTTATCGACGACGCTGAC
ATCCACCAACAAAGCATCGAAATCCTTCCCTAGAGCAAAGTTTCCGGTCA
AGTGATCGAGGGACAGCGCTTTGGCGCCACCCAAAGTGGCCAAGTAGAGC
GCCTGCTTGTACTTCAACTGATGGTAATTGAAATCTTGTGTTTTGGACAC
ACCCGTCCCGCGGATGTTCTGCTTCTTAAAAAAGTCTAAGTGTTTTGACA
CGTCCAATGCGCGGAGCAGAACGTCCTGAATCGAGACGGAGTTTCCCCCC
GAAACGTCTGTGCCGAGACCTACGCTCACGCCGCCGCTCACCAGCCGTTG
GACATCGCACAGACCGGAGCTTAGCATTGTGTTCGAAGTGGGACAGTGGG
CTACCGAGCACCCCCGGACTTTAAGAAGTGCCACCTCGTCGTCCTCCAGA
TGCACGCCGTGAGCCAGTACAGTCTTATTCGTTAGCAGTCCAGCCTCGTC
GTATGCTCCGGCATAGCTGGTCTTAAATATCCCCTTTACCATCTCGATCT
CTTCCAGGTTTTCGCTGATGTGACTCTGGATATGCAGGTCAAATCGCTTT
GCTATATCGCCCAGACTCTTTAGCAGCTCCTTGCTGCAGCTAAGGGCAAA
GCGGGGCGTAATCGTTGGCATCACCATCGGGCTGCCGAGCTTCCGCACGC
CCTCCACGAAAGCCAGGGGTGCACTGACCGACTCTTCCGCAGTCTCCACG
TAAAACTCGGGGCTGTTGCAGTTGGAGCAAACCTTGCCTATCAGTGCCCC
G

BO09350.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG18143-PA 1347 CG18143-RA 464..1344 899..19 4355 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:11:09
Subject Length Description Subject Range Query Range Score Percent Strand
DhpD-RA 1590 CG18143-RA 559..1439 899..19 4375 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:11:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4227538..4228094 19..575 2785 100 Plus
3R 32079331 3R 4228148..4228421 574..847 1355 99.6 Plus
3R 32079331 3R 4228479..4228531 847..899 250 98.1 Plus
Blast to na_te.dros performed on 2015-02-11 11:11:06 has no hits.

BO09350.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:08:21 Download gff for BO09350.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18143-PA 463..1347 16..901 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:11:19 Download gff for BO09350.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18143-PA 463..1347 16..901 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:48:53 Download gff for BO09350.3prime
Subject Subject Range Query Range Percent Splice Strand
DhpD-RA 558..1439 19..901 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:06 Download gff for BO09350.3prime
Subject Subject Range Query Range Percent Splice Strand
DhpD-RA 558..1439 19..901 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:06 Download gff for BO09350.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4227538..4228092 19..573 100 <- Plus
3R 4228148..4228421 574..847 99 <- Plus
3R 4228480..4228532 848..901 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:48:53 Download gff for BO09350.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 53260..53814 19..573 100 <- Plus
arm_3R 53870..54143 574..847 99 <- Plus
arm_3R 54202..54254 848..901 96   Plus

BO09350.5prime Sequence

831 bp (802 high quality bases) assembled on 2006-01-18

> BO09350.5prime
GAAGTTATCAGTCGACATGGCAACCGTGTTTCTTGGAACTGTCGTGCACA
CCAAGTCGTTCAGCGAGTTTGAGTCCTTTGAAGGAGGATTCCTGGCAGTG
GACGACGCTGGCAAGATAATAGGAGTGGGACAAGACTACCATGCGTGGGC
AAGCAGCAATCCGGCCCACGCCAAGGGTCTGACCGAGGTTCACCTGTCGG
ACTACCAGTTCCTCATGCCGGGCTTCGTCGACTGCCACATACACGCCCCG
CAGTTTGCGCAACTGGGACTGGGACTAGACATGCCTCTTCTGGACTGGTT
GAACACATACACTTTCCCGCTGGAGGCGAAGTTTTCCAACCACCAATACG
CCCAGCAGGTCTACCAGGGTGTGGTCGAAGCAACACTGCGGTGCGGAACC
ACTCTGGCGTCCTATTTCGCCACCAACCATCTGGAGTCAACGCTGACCTT
GGCGCGGGAGGCGGTGCGTCAAGGCCAGCGGGCACTGATAGGCAAGGTCT
GCTCCAACTGCAACAGCCCCGAGTTTTACGTGGAGACTGCGGAAGAGTCG
GTCAGTGCAACCCTGGCTTTCGTGGAGGGCGTGCGGAAGCTCGGCAGCCC
GATGGTGATGCCAACGATTACGCCCCGCTTTGCCCTTAGCTGCAGCAAGG
AGCTGCTAAAGAGTCTGGGCGATATAGCAAAGCGATTTGACCTGCATATC
CAGAGTCACATCAGCGAAAACCTGGAAGAGATCGAGATGGTAAAGGGGAT
ATTTAAGACCAGCTATGCCGGAGCATACGACGAGGCTGGACTGCTAACGA
ATAAGACTGTACTGGCTCACGGCGTGCATCT

BO09350.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG18143-PA 1347 CG18143-RA 1..815 17..831 4075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
DhpD-RA 1590 CG18143-RA 96..910 17..831 4075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4228148..4228421 805..532 1370 100 Minus
3R 32079331 3R 4228727..4228990 377..114 1320 100 Minus
3R 32079331 3R 4228479..4228634 532..377 780 100 Minus
3R 32079331 3R 4229045..4229143 115..17 495 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:45:08 has no hits.

BO09350.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:08:22 Download gff for BO09350.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18143-PA 1..815 17..831 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:11:21 Download gff for BO09350.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18143-PA 1..815 17..831 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:27:38 Download gff for BO09350.5prime
Subject Subject Range Query Range Percent Splice Strand
DhpD-RA 87..910 7..831 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:56:32 Download gff for BO09350.5prime
Subject Subject Range Query Range Percent Splice Strand
DhpD-RA 87..910 7..831 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:56:32 Download gff for BO09350.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4228067..4228092 806..831 100 <- Minus
3R 4228148..4228421 532..805 100 <- Minus
3R 4228480..4228634 377..531 100 <- Minus
3R 4228728..4228988 116..376 100 <- Minus
3R 4229045..4229152 7..115 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:27:38 Download gff for BO09350.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 53789..53814 806..831 100 <- Minus
arm_3R 53870..54143 532..805 100 <- Minus
arm_3R 54202..54356 377..531 100 <- Minus
arm_3R 54450..54710 116..376 100 <- Minus
arm_3R 54767..54874 7..115 96   Minus

BO09350.complete Sequence

1378 bp assembled on 2007-10-17

GenBank Submission: FJ631481

> BO09350.complete
GAAGTTATCAGTCGACATGGCAACCGTGTTTCTTGGAACTGTCGTGCACA
CCAAGTCGTTCAGCGAGTTTGAGTCCTTTGAAGGAGGATTCCTGGCAGTG
GACGACGCTGGCAAGATAATAGGAGTGGGACAAGACTACCATGCGTGGGC
AAGCAGCAATCCGGCCCACGCCAAGGGTCTGACCGAGGTTCACCTGTCGG
ACTACCAGTTCCTCATGCCGGGCTTCGTCGACTGCCACATACACGCCCCG
CAGTTTGCGCAACTGGGACTGGGACTAGACATGCCTCTTCTGGACTGGTT
GAACACATACACTTTCCCGCTGGAGGCGAAGTTTTCCAACCACCAATACG
CCCAGCAGGTCTACCAGGGTGTGGTCGAAGCAACACTGCGGTGCGGAACC
ACTCTGGCGTCCTATTTCGCCACCAACCATCTGGAGTCAACGCTGACCTT
GGCGCGGGAGGCGGTGCGTCAAGGCCAGCGGGCACTGATAGGCAAGGTCT
GCTCCAACTGCAACAGCCCCGAGTTTTACGTGGAGACTGCGGAAGAGTCG
GTCAGTGCAACCCTGGCTTTCGTGGAGGGCGTGCGGAAGCTCGGCAGCCC
GATGGTGATGCCAACGATTACGCCCCGCTTTGCCCTTAGCTGCAGCAAGG
AGCTGCTAAAGAGTCTGGGCGATATAGCAAAGCGATTTGACCTGCATATC
CAGAGTCACATCAGCGAAAACCTGGAAGAGATCGAGATGGTAAAGGGGAT
ATTTAAGACCAGCTATGCCGGAGCATACGACGAGGCTGGACTGCTAACGA
ATAAGACTGTACTGGCTCACGGCGTGCATCTGGAGGACGACGAGGTGGCA
CTTCTTAAAGTCCGGGGGTGCTCGGTAGCCCACTGTCCCACTTCGAACAC
AATGCTAAGCTCCGGTCTGTGCGATGTCCAACGGCTGGTGAGCGGCGGCG
TGAGCGTAGGTCTCGGCACAGACGTTTCGGGGGGAAACTCCGTCTCGATT
CAGGACGTTCTGCTCCGCGCATTGGACGTGTCAAAACACTTAGACTTTTT
TAAGAAGCAGAACATCCGCGGGACGGGTGTGTCCAAAACACAAGATTTCA
ATTACCATCAGTTGAAGTACAAGCAGGCGCTCTACTTGGCCACTTTGGGT
GGCGCCAAAGCGCTGTCCCTCGATCACTTGACCGGAAACTTTGCTCTAGG
GAAGGATTTCGATGCTTTGTTGGTGGATGTCAGCGTCGTCGATAAACCCT
TGCGGAGGCTGAGCGTCGATGAGCTGGTGGAGAAGTTCATTTACACAGGC
AGTGACCGCAACATTGTAGAAGTTTTCGTGGCCGGCAAGCGTATTAAACA
GGGATACCAAGCAAGCTTTCTAGACCAT

BO09350.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
DhpD-RA 1347 CG18143-PA 1..1344 17..1360 6720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:39:38
Subject Length Description Subject Range Query Range Score Percent Strand
DhpD-RA 1590 CG18143-RA 96..1439 17..1360 6720 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4227538..4228094 1360..804 2785 100 Minus
3R 32079331 3R 4228148..4228421 805..532 1370 100 Minus
3R 32079331 3R 4228727..4228990 377..114 1320 100 Minus
3R 32079331 3R 4228479..4228634 532..377 780 100 Minus
3R 32079331 3R 4229045..4229143 115..17 495 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:39:36 has no hits.

BO09350.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:41 Download gff for BO09350.complete
Subject Subject Range Query Range Percent Splice Strand
CG18143-RA 1..1347 17..1363 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:00 Download gff for BO09350.complete
Subject Subject Range Query Range Percent Splice Strand
CG18143-RA 98..1450 7..1360 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:00 Download gff for BO09350.complete
Subject Subject Range Query Range Percent Splice Strand
DhpD-RA 96..1439 17..1362 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:49:43 Download gff for BO09350.complete
Subject Subject Range Query Range Percent Splice Strand
CG18143-RA 107..1450 17..1362 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:40 Download gff for BO09350.complete
Subject Subject Range Query Range Percent Splice Strand
DhpD-RA 96..1439 17..1362 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:40 Download gff for BO09350.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4227535..4228092 806..1362 99 <- Minus
3R 4228148..4228421 532..805 100 <- Minus
3R 4228480..4228634 377..531 100 <- Minus
3R 4228728..4228988 116..376 100 <- Minus
3R 4229045..4229143 17..115 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:00 Download gff for BO09350.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 53257..53814 806..1362 99 <- Minus
arm_3R 53870..54143 532..805 100 <- Minus
arm_3R 54202..54356 377..531 100 <- Minus
arm_3R 54450..54710 116..376 100 <- Minus
arm_3R 54767..54865 17..115 100   Minus

BO09350.pep Sequence

Translation from 16 to 1378

> BO09350.pep
MATVFLGTVVHTKSFSEFESFEGGFLAVDDAGKIIGVGQDYHAWASSNPA
HAKGLTEVHLSDYQFLMPGFVDCHIHAPQFAQLGLGLDMPLLDWLNTYTF
PLEAKFSNHQYAQQVYQGVVEATLRCGTTLASYFATNHLESTLTLAREAV
RQGQRALIGKVCSNCNSPEFYVETAEESVSATLAFVEGVRKLGSPMVMPT
ITPRFALSCSKELLKSLGDIAKRFDLHIQSHISENLEEIEMVKGIFKTSY
AGAYDEAGLLTNKTVLAHGVHLEDDEVALLKVRGCSVAHCPTSNTMLSSG
LCDVQRLVSGGVSVGLGTDVSGGNSVSIQDVLLRALDVSKHLDFFKKQNI
RGTGVSKTQDFNYHQLKYKQALYLATLGGAKALSLDHLTGNFALGKDFDA
LLVDVSVVDKPLRRLSVDELVEKFIYTGSDRNIVEVFVAGKRIKQGYQAS
FLDH

BO09350.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
DhpD-PA 448 CG18143-PA 1..448 1..448 2302 100 Plus