Clone Sequence Records
BO09363.3prime Sequence
790 bp (789 high quality bases) assembled on 2006-01-18
> BO09363.3prime
ATGGTCTAGAAAGCTTGCTTGCAGAAAGTCGACCACCTCCTCCAGTTCTC
TTTGGCGAGCCTGTTTCTGGGCCCAGCGCGCCTCTGCGGTCTTTACGCTG
ACCACCCACCGATCGTGAGCCAGCTTGATGCCGCACACAGTGTCCTCCGG
AGTTTTGGAAACGGTGGCTCCTCCTCCCTGTGACCTGCCCATATAGGTCT
GGGCATCGGAACGAGGATGGCGACGCGCGGCGGGACATAATTTGCCACCC
TTTGGAAACGGAGGCTCCGATAGGTATTTCTTAAGGCAGCCTTGGTGAAA
GAGATGACCACAGTAGACGCGCTCGATGAAGAAGTCGGCATTGTCATCCG
TTTCTATGTCCTCTGGGTATTCGGGTAGCACGGTACTATCACATATGGGA
CAACGCTCGGTGTGAAAGTCCCGGGTGGCTTCCAGGCAGAATTTCAGCGA
GCGTTGCAGACTCCTAACAGGCCGAAAATTGGCTAGAGCCTCCTTGCTCA
TACGGATCGGTGGCTCCACGCACTGCCGGGCTATTTCCTTTGACTGGCCG
TTTAGGTAACGCACGAGCACGGCTGGGAGATTGGAATCTTGACCGCGCAG
CTCCACACTCTGCATGGGATAGCTGTCCGGAACAACAGCGATTACTCTGT
AGGTGTAGCGTCCGCCCTTGGCGACCAGCTCCACGCTTTTGTTCTTCTGC
TTCAGCTTCAACTGGCTCTCCGTGCCTCCAGTCTTGATGTCCGCTCTCAG
CTGCTTGATCTCCTCCAAGCACACGCACAGCGGATTATCA
BO09363.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17260-PA | 1095 | CG17260-RA | 321..1092 | 790..19 | 3860 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:53:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17260-RB | 1288 | CG17260-RB | 409..1180 | 790..19 | 3860 | 100 | Minus |
CG17260-RC | 1306 | CG17260-RC | 427..1198 | 790..19 | 3860 | 100 | Minus |
CG17260-RA | 1383 | CG17260-RA | 504..1275 | 790..19 | 3860 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:53:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3037914..3038685 | 790..19 | 3860 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 08:53:10 has no hits.
BO09363.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:08:45 Download gff for
BO09363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17260-PA | 322..1095 | 15..789 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:11:53 Download gff for
BO09363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17260-PA | 322..1095 | 15..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:42:28 Download gff for
BO09363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17260-RA | 505..1278 | 15..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:56:40 Download gff for
BO09363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17260-RA | 505..1278 | 15..789 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:56:40 Download gff for
BO09363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3037915..3038688 | 15..789 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:42:28 Download gff for
BO09363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3037915..3038688 | 15..789 | 99 | | Minus |
BO09363.5prime Sequence
865 bp (829 high quality bases) assembled on 2006-01-18
> BO09363.5prime
GAAGTTATCAGTCGACATGAGCTTTATTGACCAGGAAGTCACGGAGTTCC
GAGCAAAATGTGAGAAGCAGGTGCCGCACACGAAGATCATTATTTGCTCC
AACTCGCTGATCCGGGTTGACATATACCCGGAGCGGCCGAATCGCTCGAT
GACTATGTGCCTTCGATTTCCAGAAAACTACCCGCAGAGCACCCAAATTC
TGGTGGAGCTGAAGAGTCGTGTGTACTCCGAAATGCTTCTGACGGAGCTT
ACCCGGCTGATCGACGACTATGCCAGGGATTTCATCGGGAAGCCACAGGC
ATTGCAAGTGCTGGCCTTCGCCCAACAGTATTTAACTGATAATCCGCTGT
GCGTGTGCTTGGAGGAGATCAAGCAGCTGAGAGCGGACATCAAGACTGGA
GGCACGGAGAGCCAGTTGAAGCTGAAGCAGAAGAACAAAAGCGTGGAGCT
GGTCGCCAAGGGCGGACGCTACACCTACAGAGTAATCGCTGTTGTTCCGG
ACAGCTATCCCATGCAGAGTGTGGAGCTGCGCGGTCAAGATTCCAATCTC
CCAGCCGTGCTCGTGCGTTACCTAAACGGCCAGTCAAAGGAAATAGCCCG
GCAGTGCGTGGAGCCACCGATCCGTATGAGCAAGGAGGCTCTAGCCAATT
TTCGGCCTGTTAGGAGTCTGCAACGCTCGCTGAAATTCTGCCTGGAAGCC
ACCCGGGACTTTCACACCGAGCGTTGTCCCATATGTGATAGTACCGTGCT
ACCCGAATACCCAGAGGACATAGAAACGGATGACAATGCCGACTTCTTCA
TCGAGCGCGTCTACTGTGGTCATCTCTTTCACCANGGCTGCCTTAAGAAA
TACCTATCGGAGCCT
BO09363.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17260-PA | 1095 | CG17260-RA | 1..849 | 17..865 | 4226 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:49:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17260-RB | 1288 | CG17260-RB | 89..937 | 17..865 | 4234 | 99.9 | Plus |
CG17260-RC | 1306 | CG17260-RC | 107..955 | 17..865 | 4234 | 99.9 | Plus |
CG17260-RA | 1383 | CG17260-RA | 184..1032 | 17..865 | 4234 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:49:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3037594..3038442 | 17..865 | 4234 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:49:37 has no hits.
BO09363.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:08:46 Download gff for
BO09363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17260-PA | 1..849 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:11:55 Download gff for
BO09363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17260-PA | 1..849 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:17:50 Download gff for
BO09363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17260-RA | 178..1032 | 8..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:07:20 Download gff for
BO09363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17260-RA | 178..1032 | 8..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:07:20 Download gff for
BO09363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3037588..3038442 | 8..865 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:17:50 Download gff for
BO09363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3037588..3038442 | 8..865 | 99 | | Plus |
BO09363.complete Sequence
1126 bp (1126 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631482
> BO09363.complete
GAAGTTATCAGTCGACATGAGCTTTATTGACCAGGAAGTCACGGAGTTCC
GAGCAAAATGTGAGAAGCAGGTGCCGCACACGAAGATCATTATTTGCTCC
AACTCGCTGATCCGGGTTGACATATACCCGGAGCGGCCGAATCGCTCGAT
GACTATGTGCCTTCGATTTCCAGAAAACTACCCGCAGAGCACCCAAATTC
TGGTGGAGCTGAAGAGTCGTGTGTACTCCGAAATGCTTCTGACGGAGCTT
ACCCGGCTGATCGACGACTATGCCAGGGATTTCATCGGGAAGCCACAGGC
ATTGCAAGTGCTGGCCTTCGCCCAACAGTATTTAACTGATAATCCGCTGT
GCGTGTGCTTGGAGGAGATCAAGCAGCTGAGAGCGGACATCAAGACTGGA
GGCACGGAGAGCCAGTTGAAGCTGAAGCAGAAGAACAAAAGCGTGGAGCT
GGTCGCCAAGGGCGGACGCTACACCTACAGAGTAATCGCTGTTGTTCCGG
ACAGCTATCCCATGCAGAGTGTGGAGCTGCGCGGTCAAGATTCCAATCTC
CCAGCCGTGCTCGTGCGTTACCTAAACGGCCAGTCAAAGGAAATAGCCCG
GCAGTGCGTGGAGCCACCGATCCGTATGAGCAAGGAGGCTCTAGCCAATT
TTCGGCCTGTTAGGAGTCTGCAACGCTCGCTGAAATTCTGCCTGGAAGCC
ACCCGGGACTTTCACACCGAGCGTTGTCCCATATGTGATAGTACCGTGCT
ACCCGAATACCCAGAGGACATAGAAACGGATGACAATGCCGACTTCTTCA
TCGAGCGCGTCTACTGTGGTCATCTCTTTCACCAAGGCTGCCTTAAGAAA
TACCTATCGGAGCCTCCGTTTCCAAAGGGTGGCAAATTATGTCCCGCCGC
GCGTCGCCATCCTCGTTCCGATGCCCAGACCTATATGGGCAGGTCACAGG
GAGGAGGAGCCACCGTTTCCAAAACTCCGGAGGACACTGTGTGCGGCATC
AAGCTGGCTCACGATCGGTGGGTGGTCAGCGTAAAGACCGCAGAGGCGCG
CTGGGCCCAGAAACAGGCTCGCCAAAGAGAACTGGAGGAGGTGGTCGACT
TTCTGCAAGCAAGCTTTCTAGACCAT
BO09363.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:58:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17260-RB | 1095 | CG17260-PB | 1..1092 | 17..1108 | 5460 | 100 | Plus |
CG17260-RC | 1095 | CG17260-PC | 1..1092 | 17..1108 | 5460 | 100 | Plus |
CG17260-RA | 1095 | CG17260-PA | 1..1092 | 17..1108 | 5460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:58:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17260-RB | 1288 | CG17260-RB | 89..1180 | 17..1108 | 5460 | 100 | Plus |
CG17260-RC | 1306 | CG17260-RC | 107..1198 | 17..1108 | 5460 | 100 | Plus |
CG17260-RA | 1383 | CG17260-RA | 184..1275 | 17..1108 | 5460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:58:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3037594..3038685 | 17..1108 | 5460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:58:14 has no hits.
BO09363.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:49 Download gff for
BO09363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17260-RA | 1..1095 | 17..1112 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:27 Download gff for
BO09363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17260-RA | 178..1278 | 8..1112 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:28 Download gff for
BO09363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17260-RA | 184..1275 | 17..1110 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:49 Download gff for
BO09363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17260-RA | 178..1278 | 8..1112 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:20 Download gff for
BO09363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17260-RA | 184..1275 | 17..1110 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:20 Download gff for
BO09363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3037594..3038685 | 17..1110 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:28 Download gff for
BO09363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3037594..3038685 | 17..1110 | 99 | | Plus |
BO09363.pep Sequence
Translation from 16 to 1126
> BO09363.pep
MSFIDQEVTEFRAKCEKQVPHTKIIICSNSLIRVDIYPERPNRSMTMCLR
FPENYPQSTQILVELKSRVYSEMLLTELTRLIDDYARDFIGKPQALQVLA
FAQQYLTDNPLCVCLEEIKQLRADIKTGGTESQLKLKQKNKSVELVAKGG
RYTYRVIAVVPDSYPMQSVELRGQDSNLPAVLVRYLNGQSKEIARQCVEP
PIRMSKEALANFRPVRSLQRSLKFCLEATRDFHTERCPICDSTVLPEYPE
DIETDDNADFFIERVYCGHLFHQGCLKKYLSEPPFPKGGKLCPAARRHPR
SDAQTYMGRSQGGGATVSKTPEDTVCGIKLAHDRWVVSVKTAEARWAQKQ
ARQRELEEVVDFLQASFLDH
BO09363.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17260-PB | 364 | CG17260-PB | 1..364 | 1..364 | 1907 | 100 | Plus |
CG17260-PC | 364 | CG17260-PC | 1..364 | 1..364 | 1907 | 100 | Plus |
CG17260-PA | 364 | CG17260-PA | 1..364 | 1..364 | 1907 | 100 | Plus |