Clone Sequence Records
BO09366.3prime Sequence
765 bp (764 high quality bases) assembled on 2006-01-18
> BO09366.3prime
ATGGTCTAGAAAGCTTGCCACTGGGCCCATGCTGGCCTCGAACTTTCGAC
GACCTTGGATGTACCACATGGTTTCGTGGTAGGAGCGGGGCAGCACCTCG
GTAACCGTGTCCGGAGACGAGAAGGTGTAGTAGAACGTGTTGGTGGTCAC
CTGGCTGCCCGTTTGTGGGTCCATCACATCTGCAACGGTCATGATCTGCA
CGTAGTTCTCCTTGGTGTACACCACATAGGCGGTCATCTTGATGAAGCTG
TTCACGCTGACGGGCTTCTCGAAGCTGATGTCGGATATGTGCTCCAGCTT
GGGTCGCGTTTTGCAGTAGAGGTAGGCTGCTGCCCAGCTTATCTCCAGGG
CACTTCGCATGAGGAAGCCTCCGAAGACCCGGTTGTGGTGGTTCCTGTGC
TCCGGAAATGAGGGAATAGTGCTCATCTGGAAAGAGTCCTCCATCCAGCG
ACAGTTTGGTGGCAGGATGCGCTTGTTGAGTTCCAAAGTGTTGGTGGGAG
TTGTCCTTTTGTACAGCTCGTACATAATTGTCTGCTCCGGGTCATTGGGT
TCCACCTTAAAGATGGACTGAGCACAGAGAATCTGACGTTTCTTCTTTCT
ATCTGCGCCGCCAGCCAGAATCACTTTCTCTTCCTCGTTGGCCGGCTGTA
AGGGGTTCACAGGAGCCGCTCCGGTATTGTTAGCGTTTCTTGCTGCCATC
AGGAACAAGGCACGGGTTAACTTTTGGTACCTCCCGCCAACCATCTGTTC
CAGCCACACTACCAC
BO09366.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1635-PA | 1347 | CG1635-RA | 598..1344 | 765..19 | 3735 | 100 | Minus |
| CG1638-PA | 1149 | CG1638-RA | 866..989 | 305..182 | 370 | 91.9 | Minus |
| CG1638-PA | 1149 | CG1638-RA | 1021..1121 | 150..50 | 230 | 89.1 | Minus |
| CG1638-PA | 1149 | CG1638-RA | 733..782 | 438..389 | 200 | 96 | Minus |
| CG1638-PA | 1149 | CG1638-RA | 793..860 | 378..311 | 140 | 88.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:52:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1635-RA | 1548 | CG1635-RA | 678..1424 | 765..19 | 3735 | 100 | Minus |
| CG1638-RB | 1567 | CG1638-RB | 687..1361 | 707..30 | 1400 | 80.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:52:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31589522..31590268 | 765..19 | 3735 | 100 | Minus |
| 3R | 32079331 | 3R | 31591436..31592110 | 707..30 | 1345 | 80.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:52:25 has no hits.
BO09366.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:08:49 Download gff for
BO09366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1635-PA | 598..1347 | 18..765 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:11:58 Download gff for
BO09366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1635-PA | 598..1347 | 18..765 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:44:22 Download gff for
BO09366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1635-RA | 683..1429 | 19..765 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:28 Download gff for
BO09366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1635-RA | 678..1424 | 19..765 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:28 Download gff for
BO09366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31589522..31590268 | 19..765 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:44:22 Download gff for
BO09366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27415244..27415990 | 19..765 | 100 | | Minus |
BO09366.5prime Sequence
937 bp (746 high quality bases) assembled on 2006-01-18
> BO09366.5prime
GAAGTTATCAGTCGACATGATGCGTTCTTTGATAGGAGCACAAAAGTGCT
GGGGCCTGATCCGCACCAGGAACTTTATGGAATTACCCACCAAACAGGTG
CCAGCATCCTTCGCATTGTTCAAGCGTCACTACTCACCGCCCACGCATAT
CAAGCAATCAGCGGTCGCCAATGAATCCGGAACCATGGCGGAGGTCAAGC
AGGGGATGATGAAGCGATTGGGGCTGGAGCCCGGTTACAACCCGCTGCCC
AAATCCAGGGAGCAGCTGCTCAAGTACCAGCCGAAGCTGGAGGATCTGCC
TCCAAGAGCTATGCAGGATTCCTTCACCTCGGCCATCATTCCTCTGAGCA
CGGACCGCAGTTTGCAGGACAAATATGTGACCTATCTGGGCAATGTGCGA
TTCGGGCGACTTCTGGAGGACATGGACTTGTTTGCTGCTTGGTGCTGTCA
TAAACACCTGGTTCTGCCCAATCTGCCGGAGGGAGTTCATCTGCCGTACA
CCTTTGTGACCATTCTGGTGGACCGCATCGATTTCACCAATGTCTTGGCT
TCAGGCACCCAAGATATCCGTTTGTCTGGGCACGTTTCCTGGGTGGGAAC
CAGTTCAATTGAGGTGGTAGTGTGGCTGGAACAGATGGTTGGCGGGAGGT
ACCAAAAGTTAACCCGTGCCTTGTTCCTGATGGCAGCAAGAAACGCTAAC
AATACCGGAGCGGCTCCTGTGAACCCCTTACAGCCGGCCAACGAGGAAGA
GAAAGTGATTCTGGCTGGCGGCGCAGATAGAAAGAAGAAACGTCAGATTC
TCTGTGCTCAGTCCATCTTTAAGGTGGAACCCAATGACCCGGAGCAGACA
ATTATGTACGAGCTGTACAAAAGGACAACTCCCCACCACAACTTTGGAAC
TCAACAAGCGCATCCTGCCACCAAACTGTCGCTGGAT
BO09366.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1635-PA | 1347 | CG1635-RA | 1..867 | 17..883 | 4335 | 100 | Plus |
| CG1635-PA | 1347 | CG1635-RA | 874..920 | 891..937 | 235 | 100 | Plus |
| CG1638-PA | 1149 | CG1638-RA | 349..431 | 554..636 | 190 | 89.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:39:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1635-RA | 1548 | CG1635-RA | 77..1000 | 13..937 | 4555 | 99.6 | Plus |
| CG1638-RB | 1567 | CG1638-RB | 200..898 | 185..883 | 915 | 76.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:39:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31589345..31589844 | 437..937 | 2425 | 99.4 | Plus |
| 3R | 32079331 | 3R | 31589043..31589286 | 194..437 | 1220 | 100 | Plus |
| 3R | 32079331 | 3R | 31591201..31591647 | 437..883 | 660 | 76.5 | Plus |
| 3R | 32079331 | 3R | 31588749..31588860 | 13..124 | 545 | 99.1 | Plus |
| 3R | 32079331 | 3R | 31588920..31588990 | 124..194 | 355 | 100 | Plus |
| 3R | 32079331 | 3R | 31590898..31591056 | 194..352 | 225 | 76.1 | Plus |
Blast to na_te.dros performed 2015-02-12 11:39:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\TRAM | 3452 | Dmir\TRAM DMTRAM 3452bp Derived from Y08905 (Rel. 51, Last updated, Version 3). | 2707..2754 | 252..299 | 132 | 75 | Plus |
BO09366.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:08:50 Download gff for
BO09366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1635-PA | 1..920 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:00 Download gff for
BO09366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1635-PA | 1..920 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:26:22 Download gff for
BO09366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1635-RA | 73..1005 | 2..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:54:32 Download gff for
BO09366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1635-RA | 68..1000 | 2..937 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:54:32 Download gff for
BO09366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31588740..31588859 | 2..123 | 95 | -> | Plus |
| 3R | 31588920..31588990 | 124..194 | 100 | -> | Plus |
| 3R | 31589044..31589286 | 195..437 | 100 | -> | Plus |
| 3R | 31589346..31589844 | 438..937 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:26:22 Download gff for
BO09366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27414462..27414581 | 2..123 | 95 | -> | Plus |
| arm_3R | 27414642..27414712 | 124..194 | 100 | -> | Plus |
| arm_3R | 27414766..27415008 | 195..437 | 100 | -> | Plus |
| arm_3R | 27415068..27415566 | 438..937 | 99 | | Plus |
BO09366.complete Sequence
1378 bp (1378 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631483
> BO09366.complete
GAAGTTATCAGTCGACATGATGCGTTCTTTGATAGGAGCACAAAAGTGCT
GGGGCCTGATCCGCACCAGGAACTTTATGGAATTACCCACCAAACAGGTG
CCAGCATCCTTCGCATTGTTCAAGCGTCACTACTCACCGCCCACGCATAT
CAAGCAATCAGCGGTCGCCAATGAATCCGGAACCATGGCGGAGGTCAAGC
AGGGGATGATGAAGCGATTGGGGCTGGAGCCCGGTTACAACCCGCTGCCC
AAATCCAGGGAGCAGCTGCTCAAGTACCAGCCGAAGCTGGAGGATCTGCC
TCCAAGAGCTATGCAGGATTCCTTCACCTCGGCCATCATTCCTCTGAGCA
CGGACCGCAGTTTGCAGGACAAATATGTGACCTATCTGGGCAATGTGCGA
TTCGGGCGACTTCTGGAGGACATGGACTTGTTTGCTGCTTGGTGCTGTCA
TAAACACCTGGTTCTGCCCAATCTGCCGGAGGGAGTTCATCTGCCGTACA
CCTTTGTGACCATTCTGGTGGACCGCATCGATTTCACCAATGTCTTGGCT
TCAGGCACCCAAGATATCCGTTTGTCTGGGCACGTTTCCTGGGTGGGAAC
CAGTTCAATTGAGGTGGTAGTGTGGCTGGAACAGATGGTTGGCGGGAGGT
ACCAAAAGTTAACCCGTGCCTTGTTCCTGATGGCAGCAAGAAACGCTAAC
AATACCGGAGCGGCTCCTGTGAACCCCTTACAGCCGGCCAACGAGGAAGA
GAAAGTGATTCTGGCTGGCGGCGCAGATAGAAAGAAGAAACGTCAGATTC
TCTGTGCTCAGTCCATCTTTAAGGTGGAACCCAATGACCCGGAGCAGACA
ATTATGTACGAGCTGTACAAAAGGACAACTCCCACCAACACTTTGGAACT
CAACAAGCGCATCCTGCCACCAAACTGTCGCTGGATGGAGGACTCTTTCC
AGATGAGCACTATTCCCTCATTTCCGGAGCACAGGAACCACCACAACCGG
GTCTTCGGAGGCTTCCTCATGCGAAGTGCCCTGGAGATAAGCTGGGCAGC
AGCCTACCTCTACTGCAAAACGCGACCCAAGCTGGAGCACATATCCGACA
TCAGCTTCGAGAAGCCCGTCAGCGTGAACAGCTTCATCAAGATGACCGCC
TATGTGGTGTACACCAAGGAGAACTACGTGCAGATCATGACCGTTGCAGA
TGTGATGGACCCACAAACGGGCAGCCAGGTGACCACCAACACGTTCTACT
ACACCTTCTCGTCTCCGGACACGGTTACCGAGGTGCTGCCCCGCTCCTAC
CACGAAACCATGTGGTACATCCAAGGTCGTCGAAAGTTCGAGGCCAGCAT
GGGCCCAGTGGCAAGCTTTCTAGACCAT
BO09366.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:14:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1635-RA | 1347 | CG1635-PA | 1..1344 | 17..1360 | 6720 | 100 | Plus |
| CG1638-RB | 1332 | CG1638-PB | 163..1324 | 185..1349 | 1920 | 78 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1635-RA | 1548 | CG1635-RA | 77..1424 | 13..1360 | 6725 | 99.9 | Plus |
| CG1638-RB | 1567 | CG1638-RB | 200..1361 | 185..1349 | 1920 | 78 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31589345..31590268 | 437..1360 | 4620 | 100 | Plus |
| 3R | 32079331 | 3R | 31591201..31592110 | 437..1349 | 1710 | 79.6 | Plus |
| 3R | 32079331 | 3R | 31589043..31589286 | 194..437 | 1220 | 100 | Plus |
| 3R | 32079331 | 3R | 31588749..31588860 | 13..124 | 545 | 99.1 | Plus |
| 3R | 32079331 | 3R | 31588920..31588990 | 124..194 | 355 | 100 | Plus |
| 3R | 32079331 | 3R | 31590898..31591056 | 194..352 | 225 | 76.1 | Plus |
Blast to na_te.dros performed 2014-11-27 08:14:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\TRAM | 3452 | Dmir\TRAM DMTRAM 3452bp Derived from Y08905 (Rel. 51, Last updated, Version 3). | 2707..2754 | 252..299 | 132 | 75 | Plus |
BO09366.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:50 Download gff for
BO09366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1635-RA | 1..1347 | 17..1361 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:29 Download gff for
BO09366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1635-RA | 73..1429 | 2..1360 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:34 Download gff for
BO09366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1635-RA | 86..1429 | 17..1362 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:50 Download gff for
BO09366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1635-RA | 73..1429 | 2..1360 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:55 Download gff for
BO09366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1635-RA | 81..1424 | 17..1362 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:55 Download gff for
BO09366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31588753..31588859 | 17..123 | 100 | -> | Plus |
| 3R | 31588920..31588990 | 124..194 | 100 | -> | Plus |
| 3R | 31589044..31589286 | 195..437 | 100 | -> | Plus |
| 3R | 31589346..31590268 | 438..1362 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:34 Download gff for
BO09366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27414475..27414581 | 17..123 | 100 | -> | Plus |
| arm_3R | 27414642..27414712 | 124..194 | 100 | -> | Plus |
| arm_3R | 27414766..27415008 | 195..437 | 100 | -> | Plus |
| arm_3R | 27415068..27415990 | 438..1362 | 99 | | Plus |
BO09366.pep Sequence
Translation from 16 to 1378
> BO09366.pep
MMRSLIGAQKCWGLIRTRNFMELPTKQVPASFALFKRHYSPPTHIKQSAV
ANESGTMAEVKQGMMKRLGLEPGYNPLPKSREQLLKYQPKLEDLPPRAMQ
DSFTSAIIPLSTDRSLQDKYVTYLGNVRFGRLLEDMDLFAAWCCHKHLVL
PNLPEGVHLPYTFVTILVDRIDFTNVLASGTQDIRLSGHVSWVGTSSIEV
VVWLEQMVGGRYQKLTRALFLMAARNANNTGAAPVNPLQPANEEEKVILA
GGADRKKKRQILCAQSIFKVEPNDPEQTIMYELYKRTTPTNTLELNKRIL
PPNCRWMEDSFQMSTIPSFPEHRNHHNRVFGGFLMRSALEISWAAAYLYC
KTRPKLEHISDISFEKPVSVNSFIKMTAYVVYTKENYVQIMTVADVMDPQ
TGSQVTTNTFYYTFSSPDTVTEVLPRSYHETMWYIQGRRKFEASMGPVAS
FLDH
BO09366.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1635-PA | 448 | CG1635-PA | 1..448 | 1..448 | 2362 | 100 | Plus |
| CG1638-PB | 443 | CG1638-PB | 16..441 | 5..444 | 1602 | 69.5 | Plus |
| CG1774-PB | 472 | CG1774-PB | 13..445 | 6..440 | 1115 | 46.9 | Plus |
| CG1774-PA | 472 | CG1774-PA | 13..445 | 6..440 | 1115 | 46.9 | Plus |
| CG13771-PA | 451 | CG13771-PA | 40..438 | 52..454 | 833 | 41.5 | Plus |
