Clone BO09370 Report

Search the DGRC for BO09370

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:93
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG6422-RA
Protein status:BO09370.pep: validated full length
Sequenced Size:2134

Clone Sequence Records

BO09370.3prime Sequence

824 bp (796 high quality bases) assembled on 2006-01-18

> BO09370.3prime
ATGGTCTAGAAAGCTTGCTGAATATTCATTGCTTCGCATTTTATCCTTGT
CCGTGTCCTTAAAGCGCACGCCGATTTTAATTTGTTCAGTACTAAAGTCA
CGATCTCGGGTTTTTAACCTGGCCTTGTTCGTATTATTGTGTTTGTATTC
ATTTTTTCGGTTATTGGACCCGTAGTGGGACCCAAAGTCATTTTCTCTGT
CAAAGTCCGGGCCATCGCGGTCCTTGAACTGATAGTCGCTGCTTGATTTA
TGAATGTCGAAGCCTCGACGATACTCGCTGTAATTGTTGTGTGATCCGCC
ACTGCCGGCGCCACCCCTATGACCTGGATTACGGAAACCAGCTCCTCCTC
CAGAATTGAAGTGCTTTTGTGACATGCCGCCGCGTCCGTCGCGATCCCTG
TCCTTGTCGTCCGCCTGGCGATTGAAGCTGCGGGCGAGTGGGGCAGGCGC
GTGGTTGTTGCCATCGGGCCCATGCATTGGCGGACGCTTCGAGGACACCT
CTTCCTCCTGCTTCTTTTCATAGTGGAAGAAGTCATCGAATATGGACGTT
GAATGGTTGTACGAGTGCAAAATCTGCAGCACCTCGATGCCTTTGTCGTT
GGGCACTTCCTGGGTGTCCCTTGAGTTCGTCACCGACTTATTCTCATTGT
TCTCCAGTCGAATGTGACGCAGCGTTCCGTTAGGCACATCTTTGACATAT
ATCCATTTCACCTTGAACTTGCCCCTCCACTTGTCCTGCGACCAGACGCT
CGACGTTGAGTTGTAGTCGACCGGCGTCATCATTTGTGCCATGCCGCAGA
AATGGCCAGATCCATTCACCGAGA

BO09370.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG6422-PA 2103 CG6422-RA 1295..2100 824..19 4030 100 Minus
CG6422-PB 2100 CG6422-RB 1292..2097 824..19 4030 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG6422-RD 2862 CG6422-RD 1617..2422 824..19 4030 100 Minus
CG6422-RC 2616 CG6422-RC 1371..2176 824..19 4030 100 Minus
CG6422-RB 2832 CG6422-RB 1587..2392 824..19 4030 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25034687..25035454 57..824 3840 100 Plus
3R 32079331 3R 25034585..25034625 19..59 205 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:06:02 has no hits.

BO09370.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:08:55 Download gff for BO09370.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6422-PA 1296..2103 15..823 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:06 Download gff for BO09370.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6422-PB 1293..2100 15..823 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:32:06 Download gff for BO09370.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6422-RB 1588..2399 10..823 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:35:01 Download gff for BO09370.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6422-RB 1588..2399 10..823 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:35:01 Download gff for BO09370.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25034578..25034623 10..57 91 <- Plus
3R 25034688..25035453 58..823 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:32:06 Download gff for BO09370.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20860300..20860345 10..57 91 <- Plus
arm_3R 20860410..20861175 58..823 100   Plus

BO09370.5prime Sequence

768 bp (694 high quality bases) assembled on 2006-01-18

> BO09370.5prime
GAAGTTATCAGTCGACATGTCAGGCGTGGATCAGATGAAAATACCAGGAA
ACACAGCTAAATCGGTCGAGGAGCGCAACATACCATGGAGTCAGCAAGTC
GATGAGGCCTCGTACGAAAATCTATCCTCTCCCACTCACGATGAAGTCTC
TGGCAATGACAACTCCATGCAATTCCAATATCCGCCGTTCAACTTCAAGG
AGAATTGCAACACTCCATGGAACAATATGAACAAGGGCCGAAAGGCGAAC
GCCAACCATGATTCATATAGAAGACATGGTCATAGTATTCCCAATAACAC
ACGACGCGACGAGCACCAAGTAAATCCTTGGAATTCCAGGAAGCCAGCAG
CACAGTCGTTTCGAAATGAAAACGATCAGCCGTCTACAAAACTGGACAAC
AGAACAAGCGATGAAGCACAAAATCAAGAAGTTGTCGCCGCTCCCAAGAA
GACAACCTGGGCCTCGATTGCCTCCCAGCCAGCCAAACTAACATCGAGAG
CAGCGTCCACCACTTCCAACAGCAAGAAGAAGGGTCCTGGCATGCCACCA
CCACCCATGGTTCCGGGAAAGCACAATTTAGATGTTAACGTATGGGATTT
GCCGAATAACAAACCACCTCCTGTACCATCTCCACCCTCGCCGATCGATT
TGGGCTATTCCGACTTGAGTTCTGACTTCTCCATATCGAGCAACACGGCA
CCGCCATTGGGCGCACGAGCCGAGAAAGTGCACAAGGATACGGAGAACTT
CCTGAAATACGAGCACAA

BO09370.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG6422-PA 2103 CG6422-RA 1..752 17..768 3760 100 Plus
CG6422-PB 2100 CG6422-RB 35..749 54..768 3575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:29:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG6422-RD 2862 CG6422-RD 323..1074 17..768 3760 100 Plus
CG6422-RA 2965 CG6422-RA 157..908 17..768 3760 100 Plus
CG6422-RC 2616 CG6422-RC 91..828 31..768 3690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25036063..25036331 768..500 1345 100 Minus
3R 32079331 3R 25036392..25036538 500..354 735 100 Minus
3R 32079331 3R 25038211..25038319 260..152 545 100 Minus
3R 32079331 3R 25038420..25038519 153..54 500 100 Minus
3R 32079331 3R 25036623..25036718 355..260 480 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:29:21 has no hits.

BO09370.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:08:57 Download gff for BO09370.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6422-PA 1..750 17..766 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:08 Download gff for BO09370.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6422-PA 1..750 17..766 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:14:30 Download gff for BO09370.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6422-RA 151..906 9..766 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:07:06 Download gff for BO09370.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6422-RA 151..906 9..766 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:07:06 Download gff for BO09370.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25038421..25038516 57..152 100 <- Minus
3R 25038653..25038674 35..56 100 <- Minus
3R 25036065..25036331 500..766 100 <- Minus
3R 25036393..25036536 356..499 100 <- Minus
3R 25036623..25036717 261..355 100 <- Minus
3R 25038211..25038318 153..260 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:14:30 Download gff for BO09370.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20861787..20862053 500..766 100 <- Minus
arm_3R 20862115..20862258 356..499 100 <- Minus
arm_3R 20862345..20862439 261..355 100 <- Minus
arm_3R 20863933..20864040 153..260 100 <- Minus
arm_3R 20864143..20864238 57..152 100 <- Minus
arm_3R 20864375..20864396 35..56 100 <- Minus

BO09370.complete Sequence

2134 bp assembled on 2007-10-05

GenBank Submission: FJ631484

> BO09370.complete
GAAGTTATCAGTCGACATGTCAGGCGTGGATCAGATGAAAATACCAGGAA
ACACAGCTAAATCGGTCGAGGAGCGCAACATACCATGGAGTCAGCAAGTC
GATGAGGCCTCGTACGAAAATCTATCCTCTCCCACTCACGATGAAGTCTC
TGGCAATGACAACTCCATGCAATTCCAATATCCGCCGTTCAACTTCAAGG
AGAATTGCAACACTCCATGGAACAATATGAACAAGGGCCGAAAGGCGAAC
GCCAACCATGATTCATATAGAAGACATGGTCATAGTATTCCCAATAACAC
ACGACGCGACGAGCACCAAGTAAATCCTTGGAATTCCAGGAAGCCAGCAG
CACAGTCGTTTCGAAATGAAAACGATCAGCCGTCTACAAAACTGGACAAC
AGAACAAGCGATGAAGCACAAAATCAAGAAGTTGTCGCCGCTCCCAAGAA
GACAACCTGGGCCTCGATTGCCTCCCAGCCAGCCAAACTAACATCGAGAG
CAGCGTCCACCACTTCCAACAGCAAGAAGAAGGGTCCTGGCATGCCACCA
CCACCCATGGTTCCGGGAAAGCACAATTTAGATGTTAACGTATGGGATTT
GCCGAATAACAAACCACCTCCTGTACCATCTCCACCCTCGCCGATCGATT
TGGGCTATTCCGACTTGAGTTCTGACTTCTCCATATCGAGCAACACGGCA
CCGCCATTGGGCGCACGAGCCGAGAAAGTGCACAAGGATACGGAGAACTT
CCTGAAATACGAGCACAAGGGCTTGGGAAATAACAATAACTTCAGCAGAG
CCAAGGTTTCGCCCACGGGACCTGTTCGCAGGAATCTAGGGCCCCAGCAG
CCTGTCCACCATGCCGCCCCACGTCCAGCGACCAATGCCGGTCCATTTGG
GCCACCGAACGCCAGACGACACGACGGCGGGCCGCATCCAAGCCGGAACT
CGGAGCGCTCGGGCAACTATTCCAGTTTCCGCGGCAGCGAGTTTGAGAGT
GCTTCGAAGTTCGAATACCGCGACGAGAACCAATCACGACCGGTGGAAGC
CACATCTGCAACCGAAGAGCTGCCTGTCGATTCCCAACTCGTGTTGGACG
AATTAAAAGACAAAAACAATTACAACCCAAAAGTGTTGGACTTGAAAAAA
GCCGGATCGGCCAGATTCTTTGTCATCAAATCGTACTCCGAAGATGACAT
CCATCGCAGTATAAAGTATGAGATTTGGTGCTCAACCGATCACGGCAATA
AGAGATTGGACGATGCCTTCAAGGAGCGACACGAAGAGGGCGGCAACATA
ATGCTGTTCTTCTCGGTGAATGGATCTGGCCATTTCTGCGGCATGGCACA
AATGATGACGCCGGTCGACTACAACTCAACGTCGAGCGTCTGGTCGCAGG
ACAAGTGGAGGGGCAAGTTCAAGGTGAAATGGATATATGTCAAAGATGTG
CCTAACGGAACGCTGCGTCACATTCGACTGGAGAACAATGAGAATAAGTC
GGTGACGAACTCAAGGGACACCCAGGAAGTGCCCAACGACAAAGGCATCG
AGGTGCTGCAGATTTTGCACTCGTACAACCATTCAACGTCCATATTCGAT
GACTTCTTCCACTATGAAAAGAAGCAGGAGGAAGAGGTGTCCTCGAAGCG
TCCGCCAATGCATGGGCCCGATGGCAACAACCACGCGCCTGCCCCACTCG
CCCGCAGCTTCAATCGCCAGGCGGACGACAAGGACAGGGATCGCGACGGA
CGCGGCGGCATGTCACAAAAGCACTTCAATTCTGGAGGAGGAGCTGGTTT
CCGTAATCCAGGTCATAGGGGTGGCGCCGGCAGTGGCGGATCACACAACA
ATTACAGCGAGTATCGTCGAGGCTTCGACATTCATAAATCAAGCAGCGAC
TATCAGTTCAAGGACCGCGATGGCCCGGACTTTGACAGAGAAAATGACTT
TGGGTCCCACTACGGGTCCAATAACCGAAAAAATGAATACAAACACAATA
ATACGAACAAGGCCAGGTTAAAAACCCGAGATCGTGACTTTAGTACTGAA
CAAATTAAAATCGGCGTGCGCTTTAAGGACACGGACAAGGATAAAATGCG
AAGCAATGAATATTCAGCAAGCTTTCTAGACCAT

BO09370.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6422-RD 2103 CG6422-PD 1..2100 17..2116 10500 100 Plus
CG6422-RA 2103 CG6422-PA 1..2100 17..2116 10500 100 Plus
CG6422-RC 2085 CG6422-PC 1..2082 35..2116 10410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6422-RD 2862 CG6422-RD 323..2422 17..2116 10500 100 Plus
CG6422-RA 2965 CG6422-RA 157..2256 17..2116 10500 100 Plus
CG6422-RC 2616 CG6422-RC 91..2176 31..2116 10430 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25034687..25035603 2078..1162 4585 100 Minus
3R 32079331 3R 25035667..25036331 1164..500 3325 100 Minus
3R 32079331 3R 25036392..25036538 500..354 735 100 Minus
3R 32079331 3R 25038211..25038319 260..152 545 100 Minus
3R 32079331 3R 25038420..25038519 153..54 500 100 Minus
3R 32079331 3R 25036623..25036718 355..260 480 100 Minus
3R 32079331 3R 25034585..25034625 2116..2076 205 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:48:13 has no hits.

BO09370.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:10 Download gff for BO09370.complete
Subject Subject Range Query Range Percent Splice Strand
CG6422-RA 1..2103 17..2120 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:18:22 Download gff for BO09370.complete
Subject Subject Range Query Range Percent Splice Strand
CG6422-RA 147..2259 9..2125 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:07 Download gff for BO09370.complete
Subject Subject Range Query Range Percent Splice Strand
CG6422-RA 157..2256 17..2118 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:11 Download gff for BO09370.complete
Subject Subject Range Query Range Percent Splice Strand
CG6422-RA 147..2259 9..2125 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:19 Download gff for BO09370.complete
Subject Subject Range Query Range Percent Splice Strand
CG6422-RA 157..2256 17..2118 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:19 Download gff for BO09370.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25036623..25036717 261..355 100 <- Minus
3R 25038211..25038318 153..260 100 <- Minus
3R 25038421..25038516 57..152 100 <- Minus
3R 25038653..25038674 35..56 100 <- Minus
3R 25038846..25038863 17..34 100   Minus
3R 25034583..25034623 2078..2118 95 <- Minus
3R 25034688..25035600 1165..2077 100 <- Minus
3R 25035667..25036331 500..1164 100 <- Minus
3R 25036393..25036536 356..499 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:07 Download gff for BO09370.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20862115..20862258 356..499 100 <- Minus
arm_3R 20862345..20862439 261..355 100 <- Minus
arm_3R 20863933..20864040 153..260 100 <- Minus
arm_3R 20864143..20864238 57..152 100 <- Minus
arm_3R 20864375..20864396 35..56 100 <- Minus
arm_3R 20864568..20864585 17..34 100   Minus
arm_3R 20860305..20860345 2078..2118 95 <- Minus
arm_3R 20860410..20861322 1165..2077 100 <- Minus
arm_3R 20861389..20862053 500..1164 100 <- Minus

BO09370.pep Sequence

Translation from 16 to 2134

> BO09370.pep
MSGVDQMKIPGNTAKSVEERNIPWSQQVDEASYENLSSPTHDEVSGNDNS
MQFQYPPFNFKENCNTPWNNMNKGRKANANHDSYRRHGHSIPNNTRRDEH
QVNPWNSRKPAAQSFRNENDQPSTKLDNRTSDEAQNQEVVAAPKKTTWAS
IASQPAKLTSRAASTTSNSKKKGPGMPPPPMVPGKHNLDVNVWDLPNNKP
PPVPSPPSPIDLGYSDLSSDFSISSNTAPPLGARAEKVHKDTENFLKYEH
KGLGNNNNFSRAKVSPTGPVRRNLGPQQPVHHAAPRPATNAGPFGPPNAR
RHDGGPHPSRNSERSGNYSSFRGSEFESASKFEYRDENQSRPVEATSATE
ELPVDSQLVLDELKDKNNYNPKVLDLKKAGSARFFVIKSYSEDDIHRSIK
YEIWCSTDHGNKRLDDAFKERHEEGGNIMLFFSVNGSGHFCGMAQMMTPV
DYNSTSSVWSQDKWRGKFKVKWIYVKDVPNGTLRHIRLENNENKSVTNSR
DTQEVPNDKGIEVLQILHSYNHSTSIFDDFFHYEKKQEEEVSSKRPPMHG
PDGNNHAPAPLARSFNRQADDKDRDRDGRGGMSQKHFNSGGGAGFRNPGH
RGGAGSGGSHNNYSEYRRGFDIHKSSSDYQFKDRDGPDFDRENDFGSHYG
SNNRKNEYKHNNTNKARLKTRDRDFSTEQIKIGVRFKDTDKDKMRSNEYS
ASFLDH

BO09370.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6422-PD 700 CG6422-PD 1..700 1..700 3807 100 Plus
CG6422-PA 700 CG6422-PA 1..700 1..700 3807 100 Plus
CG6422-PC 694 CG6422-PC 1..694 7..700 3777 100 Plus
CG6422-PB 699 CG6422-PB 8..699 9..700 3751 99.6 Plus