Clone Sequence Records
BO09371.3prime Sequence
920 bp (844 high quality bases) assembled on 2006-01-18
> BO09371.3prime
ATGGTCTAGAAAGCTTGCATTTTGTCTCTGCTTTTTCTTTTGCTTCCCCG
TTGCCCAAGTGTCCAGTTGGAACTCCAAGCCCTCCCGTCGCTGCCTTACA
TTCTGCGGAGTTGCATAGGAGGTAGCCTGCCGGCGATTCTCGTCAAAATC
AAACAGATGATCGATTCGCATATTAAGCTTCCTGGCCCGCGTGCCTGTGC
TCCAATGATCTTTCTCCCTGCGCGGCTGGAATTCGTTTTGCACGACCTTC
CGACGGGGCACATGCTTCAAGGCCGTATCCCAGTCGCCGGTTTTCTTGAG
GTCCAGCATAATGTTGATCATCTGGTTTAGAGTTAGCGACTTTCCCGAAC
CGGAACCCCACTGTAGGTAGCGATCCAGGGGCAGTCTCGCCATCCGAAGG
CCCAATCGTTTGGCTTTGGCCAGCGAAAGGGGTTCGTTGTTCATAGTGTC
TACCATGGCGCCCACGATGTAGATGTCATCTGGGTTGTAAGTGACCAGAT
CCTCCCGGCAGTGGGGCGTTAGGTAGACCAGGTTCTGCTTGGGAAAGAGT
TCCGTAAAGCACTTGCTATGCAAATTTATCGGGAACTCTGGATTGTGCAT
GGTGGGGATGTAGCGTTGGAGGCTCTGCATGCATCTGCTGTCCATCTGGG
TGTTGCAATAGTGCAGATCGAAGGGCTCATCATTCATCCGGTTCTCCGCA
AAGCACATCATCAATTGCTTTGCTGCATAGGTAGCCTCCCGATTGTTCAT
GTGCTCATCGTAGGAGCAATCCAAAACCATTTTGGGGGCAAACTGCATGG
CCCGTGTGAGTCGGTTGTTCTGCCAGTGATTAATAGTGGTATCATAGATA
CGCAGAAACAACGATGTGTGTCCCAGGCCATAGATAATGTGCGTATTCTC
CTCGCGCTCCTTTCGCATCT
BO09371.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5190-PA | 1341 | CG5190-RA | 437..1338 | 920..19 | 4510 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:03:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5190-RA | 1453 | CG5190-RA | 529..1430 | 920..19 | 4510 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:03:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18451812..18452713 | 920..19 | 4510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:03:04 has no hits.
BO09371.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:08:57 Download gff for
BO09371.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5190-PA | 437..1341 | 15..920 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:09 Download gff for
BO09371.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5190-PA | 437..1341 | 15..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:33:10 Download gff for
BO09371.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5190-RA | 529..1440 | 8..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:43:12 Download gff for
BO09371.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5190-RA | 529..1440 | 8..920 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:43:12 Download gff for
BO09371.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18451812..18452723 | 8..920 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:33:10 Download gff for
BO09371.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14339317..14340228 | 8..920 | 99 | | Minus |
BO09371.5prime Sequence
832 bp (783 high quality bases) assembled on 2006-01-18
> BO09371.5prime
GAAGTTATCAGTCGACATGCTGAAGCATTTTGCACGATGGCGTCTGGGCA
GCCAGTTGCTAAAGGGATGTGCCGCACCAGTGAGGCAAGCCTCCAAAACC
TCCAGCGCAGAGAACCTGATAGCCGGCACAGAGGAACCCCAAAAAAAGTT
CGTCAATCCGTTTTCCCAGCCCGCTCCTGCGTTAAGTAATGATACGATAT
CAGAGAACAAGGAGGAACGGGATAAGCGACTCAAGGTGCTGCAGCTGGAG
GCGGACATTGCCCACCAGGAGGGTCGGCGGGTGCCGTCACTGGAATTCTT
TAAGGATCATCATTGGGAGCACGTGCTGACGCTACCCACAAAATCAGCTA
GGATCAAGTACTTTGGCTATCTCTGGCAAATCGAGATGAAGAAGGAGGCG
GATCAACGCAAGAAGGCAGAGCGAGCGAAGGAAGCCGAGCGGCGGGTTGC
GGAGATGCGAAAGGAGCGCGAGGAGAATACGCACATTATCTATGGCCTGG
GACACACATCGTTGTTTCTGCGTATCTATGATACCACTATTAATCACTGG
CAGAACAACCGACTCACACGGGCCATGCAGTTTGCCCCCAAAATGGTTTT
GGATTGCTCCTACGATGAGCACATGAACAATCGGGAGGCTACCTATGCAG
CAAAGCAATTGATGATGTGCTTTGCGGAGAACCGGATGAATGATGAGCCC
TTCGATCTGCACTATTGCAACACCCAGATGGACAGCAGATGCATGCAGAG
CCTCCAACGCTACATCCCCACCATGCACAATCCAGAGTTCCCGATAAATT
TGCATAGCAAGTGCTTTACGGAACTCTTTCCA
BO09371.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5190-PA | 1341 | CG5190-RA | 1..815 | 17..831 | 4075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:30:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5190-RA | 1453 | CG5190-RA | 93..907 | 17..831 | 4075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:30:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18451376..18452190 | 17..831 | 4075 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:30:02 has no hits.
BO09371.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:08:58 Download gff for
BO09371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5190-PA | 1..815 | 17..831 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:10 Download gff for
BO09371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5190-PA | 1..815 | 17..831 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:47:24 Download gff for
BO09371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5190-RA | 93..907 | 17..831 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:53:47 Download gff for
BO09371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5190-RA | 93..907 | 17..831 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:53:47 Download gff for
BO09371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18451376..18452190 | 17..831 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:47:24 Download gff for
BO09371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14338881..14339695 | 17..831 | 100 | | Plus |
BO09371.complete Sequence
1372 bp (1372 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631485
> BO09371.complete
GAAGTTATCAGTCGACATGCTGAAGCATTTTGCACGATGGCGTCTGGGCA
GCCAGTTGCTAAAGGGATGTGCCGCACCAGTGAGGCAAGCCTCCAAAACC
TCCAGCGCAGAGAACCTGATAGCCGGCACAGAGGAACCCCAAAAAAAGTT
CGTCAATCCGTTTTCCCAGCCCGCTCCTGCGTTAAGTAATGATACGATAT
CAGAGAACAAGGAGGAACGGGATAAGCGACTCAAGGTGCTGCAGCTGGAG
GCGGACATTGCCCACCAGGAGGGTCGGCGGGTGCCGTCACTGGAATTCTT
TAAGGATCATCATTGGGAGCACGTGCTGACGCTACCCACAAAATCAGCTA
GGATCAAGTACTTTGGCTATCTCTGGCAAATCGAGATGAAGAAGGAGGCG
GATCAACGCAAGAAGGCAGAGCGAGCGAAGGAAGCCGAGCGGCGGGTTGC
GGAGATGCGAAAGGAGCGCGAGGAGAATACGCACATTATCTATGGCCTGG
GACACACATCGTTGTTTCTGCGTATCTATGATACCACTATTAATCACTGG
CAGAACAACCGACTCACACGGGCCATGCAGTTTGCCCCCAAAATGGTTTT
GGATTGCTCCTACGATGAGCACATGAACAATCGGGAGGCTACCTATGCAG
CAAAGCAATTGATGATGTGCTTTGCGGAGAACCGGATGAATGATGAGCCC
TTCGATCTGCACTATTGCAACACCCAGATGGACAGCAGATGCATGCAGAG
CCTCCAACGCTACATCCCCACCATGCACAATCCAGAGTTCCCGATAAATT
TGCATAGCAAGTGCTTTACGGAACTCTTTCCCAAGCAGAACCTGGTCTAC
CTAACGCCCCACTGCCGGGAGGATCTGGTCACTTACAACCCAGATGACAT
CTACATCGTGGGCGCCATGGTAGACACTATGAACAACGAACCCCTTTCGC
TGGCCAAAGCCAAACGATTGGGCCTTCGGATGGCGAGACTGCCCCTGGAT
CGCTACCTACAGTGGGGTTCCGGTTCGGGAAAGTCGCTAACTCTAAACCA
GATGATCAACATTATGCTGGACCTCAAGAAAACCGGCGACTGGGATACGG
CCTTGAAGCATGTGCCCCGTCGGAAGGTCGTGCAAAACGAATTCCAGCCG
CGCAGGGAGAAAGATCATTGGAGCACAGGCACGCGGGCCAGGAAGCTTAA
TATGCGAATCGATCATCTGTTTGATTTTGACGAGAATCGCCGGCAGGCTA
CCTCCTATGCAACTCCGCAGAATGTAAGGCAGCGACGGGAGGGCTTGGAG
TTCCAACTGGACACTTGGGCAACGGGGAAGCAAAAGAAAAAGCAGAGACA
AAATGCAAGCTTTCTAGACCAT
BO09371.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:42:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5190-RA | 1341 | CG5190-PA | 1..1338 | 17..1354 | 6690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:42:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5190-RA | 1453 | CG5190-RA | 93..1430 | 17..1354 | 6690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:42:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18451376..18452713 | 17..1354 | 6690 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:42:40 has no hits.
BO09371.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:51 Download gff for
BO09371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5190-RA | 1..1341 | 17..1358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:30 Download gff for
BO09371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5190-RA | 72..1419 | 17..1365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:03 Download gff for
BO09371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5190-RA | 93..1430 | 17..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:51 Download gff for
BO09371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5190-RA | 72..1419 | 17..1365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:39 Download gff for
BO09371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5190-RA | 93..1430 | 17..1356 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:39 Download gff for
BO09371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18451376..18452713 | 17..1356 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:03 Download gff for
BO09371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14338881..14340218 | 17..1356 | 99 | | Plus |
BO09371.pep Sequence
Translation from 16 to 1372
> BO09371.pep
MLKHFARWRLGSQLLKGCAAPVRQASKTSSAENLIAGTEEPQKKFVNPFS
QPAPALSNDTISENKEERDKRLKVLQLEADIAHQEGRRVPSLEFFKDHHW
EHVLTLPTKSARIKYFGYLWQIEMKKEADQRKKAERAKEAERRVAEMRKE
REENTHIIYGLGHTSLFLRIYDTTINHWQNNRLTRAMQFAPKMVLDCSYD
EHMNNREATYAAKQLMMCFAENRMNDEPFDLHYCNTQMDSRCMQSLQRYI
PTMHNPEFPINLHSKCFTELFPKQNLVYLTPHCREDLVTYNPDDIYIVGA
MVDTMNNEPLSLAKAKRLGLRMARLPLDRYLQWGSGSGKSLTLNQMINIM
LDLKKTGDWDTALKHVPRRKVVQNEFQPRREKDHWSTGTRARKLNMRIDH
LFDFDENRRQATSYATPQNVRQRREGLEFQLDTWATGKQKKKQRQNASFL
DH
BO09371.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5190-PA | 446 | CG5190-PA | 1..446 | 1..446 | 2379 | 100 | Plus |
| CG14618-PA | 319 | CG14618-PA | 43..285 | 127..384 | 174 | 22.3 | Plus |
