Clone Sequence Records
BO09372.3prime Sequence
834 bp (818 high quality bases) assembled on 2006-01-18
> BO09372.3prime
ATGGTCTAGAAAGCTTGCAAGTGTCTTGAGCAAGCTGGCCTTTGCGGCTC
CGGCTTCGTAGCCCGGCGGTTGACCGTATGCCGAACTGCTACTGGCCACG
GCAGCTGCGGCAGCCACTGCCGCATCCGCAACGGGAGTGACAGCAGTTCC
CGGTGATGCCAATGTTGTTGTTGTCGTAGATGATGTTGATGCTGATGAGG
CGGCTGGAATTCCAACCTTTTTAATGGGCTTATAACGATGCAACGCCTCC
GCAGACGTCACCTTGAACGTTTCAATCATCTGGGAGCGGACACGCTCCAT
TAGCACATCGATGTCGTCCTTGGTTAGTCCTTCGGTGCTAACCGGCGGCA
GCGTGGTAATCACAATGCGACCCGAATTCAAAATCTTTTTCTTATCATTG
AGGAATGTGCAGTAGGAGGAGAAGACCACCGGCAGAATGGGTATCTGCTG
ATCGATGGCCATGTGAAAGGCGCCCTTTTTGAACGGATGCAGTGCGCCCG
TATTGCGGCGCGTTCCCTCCGGGAAAACCCACAGTTTGATACGTTGCTTC
TTGATGCGCCGGTTAACATCGTTTAGCGTTTCGCGCGCCTTCTCGCCGCG
CACACGATCGATGAAGATTAGGCCAGCCAACCATGCCGCCAAGCCAAAAG
GCCAGGCGTAGAAGAGCTCTCGTTTGGCCACCACTGTGCACTTGTTCATC
ACATGCCAGATGTTGAACATGCCCAGCACATCCAGCGAGCTTTGGTGATT
GGCCACAATGATGCAGGCCTGGTCCTTGGCCAAATGCTCCTTGCCGCGCA
GCTCCCATCGCANGCCAATCAACGTCGAAACGCG
BO09372.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3812-PA | 1032 | CG3812-RA | 214..1029 | 834..19 | 4061 | 99.8 | Minus |
CG3812-PB | 1032 | CG3812-RB | 214..1029 | 834..19 | 4061 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:03:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3812-RC | 3566 | CG3812-RC | 518..1333 | 834..19 | 4069 | 99.9 | Minus |
CG3812-RB | 3795 | CG3812-RB | 747..1562 | 834..19 | 4069 | 99.9 | Minus |
CG3812-RA | 1831 | CG3812-RA | 656..1471 | 834..19 | 4069 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:03:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12769914..12770618 | 723..19 | 3525 | 100 | Minus |
X | 23542271 | X | 12769713..12769825 | 834..722 | 554 | 99.1 | Minus |
Blast to na_te.dros performed 2015-02-10 19:03:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2465 | 206..99 | 135 | 58.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2388..2431 | 206..163 | 121 | 75 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2364 | 197..146 | 116 | 69.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2883 | 201..104 | 112 | 57.1 | Minus |
BO09372.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:08:59 Download gff for
BO09372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3812-PB | 214..1032 | 18..834 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:12 Download gff for
BO09372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3812-PB | 214..1032 | 18..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:55:37 Download gff for
BO09372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3812-RA | 656..1477 | 12..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:29 Download gff for
BO09372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3812-RA | 656..1477 | 12..834 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:29 Download gff for
BO09372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12769713..12769824 | 723..834 | 99 | -> | Minus |
X | 12769915..12770624 | 12..722 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:55:37 Download gff for
BO09372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12663746..12663857 | 723..834 | 99 | -> | Minus |
arm_X | 12663948..12664657 | 12..722 | 99 | | Minus |
BO09372.5prime Sequence
853 bp (843 high quality bases) assembled on 2006-01-18
> BO09372.5prime
GAAGTTATCAGTCGACATGATCACCATGACTTCGTTTATCGAACTGCTGG
GACTTTTCTTGCTGCTGATGCTGCCATTCCTCTATGAGACCAATCACATA
TTCCGATACTACTTCAAATTCCTGATGTACTACGGCATCGTGTCGTTCAA
CTCGATCATCCTCATCCCGGCATTCCTCACCAGACCATGCGATGTCCGCA
ATCTGCTATGGGCGAGCACCTGGTGCCACCGCGTTTCGACGTTGATTGGC
CTGCGATGGGAGCTGCGCGGCAAGGAGCATTTGGCCAAGGACCAGGCCTG
CATCATTGTGGCCAATCACCAAAGCTCGCTGGATGTGCTGGGCATGTTCA
ACATCTGGCATGTGATGAACAAGTGCACAGTGGTGGCCAAACGAGAGCTC
TTCTACGCCTGGCCTTTTGGCTTGGCGGCATGGTTGGCTGGCCTAATCTT
CATCGATCGTGTGCGCGGCGAGAAGGCGCGCGAAACGCTAAACGATGTTA
ACCGGCGCATCAAGAAGCAACGTATCAAACTGTGGGTTTTCCCGGAGGGA
ACGCGCCGCAATACGGGCGCACTGCATCCGTTCAAAAAGGGCGCCTTTCA
CATGGCCATCGATCAGCAGATACCCATTCTGCCGGTGGTCTTCTCCTCCT
ACTGCACATTCCTCAATGATAAGAAAAAGATTTTGAATTCGGGTCGCATT
GTGATTACCACGCTGCCGCCGGTTAGCACCGAAGGACTAACCAAGGACGA
CATCGATGTGCTAATGGAGCGTGTCCGCTCCCAGATGATTGAAACGTTCA
AGGTGACGTCTGCGGAGGCGTTGCATCGTTATAAGCCCATTAAAAAAGTT
GGA
BO09372.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3812-PA | 1032 | CG3812-RA | 1..837 | 17..853 | 4160 | 99.8 | Plus |
CG3812-PB | 1032 | CG3812-RB | 1..837 | 17..853 | 4160 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:56:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3812-RC | 3566 | CG3812-RC | 305..1141 | 17..853 | 4170 | 99.9 | Plus |
CG3812-RB | 3795 | CG3812-RB | 534..1370 | 17..853 | 4170 | 99.9 | Plus |
CG3812-RA | 1831 | CG3812-RA | 443..1279 | 17..853 | 4170 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:56:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12769914..12770426 | 341..853 | 2550 | 99.8 | Plus |
X | 23542271 | X | 12767164..12767354 | 17..207 | 955 | 100 | Plus |
X | 23542271 | X | 12769691..12769825 | 208..342 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:56:13 has no hits.
BO09372.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:00 Download gff for
BO09372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3812-PB | 1..836 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:13 Download gff for
BO09372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3812-PB | 1..836 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:58:07 Download gff for
BO09372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3812-RA | 435..1278 | 7..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:33:05 Download gff for
BO09372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3812-RA | 435..1278 | 7..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:05 Download gff for
BO09372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12769691..12769824 | 208..341 | 100 | -> | Plus |
X | 12767156..12767354 | 7..207 | 98 | -> | Plus |
X | 12769915..12770425 | 342..852 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:58:07 Download gff for
BO09372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12661189..12661387 | 7..207 | 98 | -> | Plus |
arm_X | 12663724..12663857 | 208..341 | 100 | -> | Plus |
arm_X | 12663948..12664458 | 342..852 | 99 | | Plus |
BO09372.complete Sequence
1063 bp (1063 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631486
> BO09372.complete
GAAGTTATCAGTCGACATGATCACCATGACTTCGTTTATCGAACTGCTGG
GACTTTTCTTGCTGCTGATGCTGCCATTCCTCTATGAGACCAATCACATA
TTCCGATACTACTTCAAATTCCTGATGTACTACGGCATCGTGTCGTTCAA
CTCGATCATCCTCATCCCGGCATTCCTCACCAGACCATGCGATGTCCGCA
ATCTGCTATGGGCGAGCACCTGGTGCCACCGCGTTTCGACGTTGATTGGC
CTGCGATGGGAGCTGCGCGGCAAGGAGCATTTGGCCAAGGACCAGGCCTG
CATCATTGTGGCCAATCACCAAAGCTCGCTGGATGTGCTGGGCATGTTCA
ACATCTGGCATGTGATGAACAAGTGCACAGTGGTGGCCAAACGAGAGCTC
TTCTACGCCTGGCCTTTTGGCTTGGCGGCATGGTTGGCTGGCCTAATCTT
CATCGATCGTGTGCGCGGCGAGAAGGCGCGCGAAACGCTAAACGATGTTA
ACCGGCGCATCAAGAAGCAACGTATCAAACTGTGGGTTTTCCCGGAGGGA
ACGCGCCGCAATACGGGCGCACTGCATCCGTTCAAAAAGGGCGCCTTTCA
CATGGCCATCGATCAGCAGATACCCATTCTGCCGGTGGTCTTCTCCTCCT
ACTGCACATTCCTCAATGATAAGAAAAAGATTTTGAATTCGGGTCGCATT
GTGATTACCACGCTGCCGCCGGTTAGCACCGAAGGACTAACCAAGGACGA
CATCGATGTGCTAATGGAGCGTGTCCGCTCCCAGATGATTGAAACGTTCA
AGGTGACGTCTGCGGAGGCGTTGCATCGTTATAAGCCCATTAAAAAGGTT
GGAATTCCAGCCGCCTCATCAGCATCAACATCATCTACGACAACAACAAC
ATTGGCATCACCGGGAACTGCTGTCACTCCCGTTGCGGATGCGGCAGTGG
CTGCCGCAGCTGCCGTGGCCAGTAGCAGTTCGGCATACGGTCAACCGCCG
GGCTACGAAGCCGGAGCCGCAAAGGCCAGCTTGCTCAAGACACTTGCAAG
CTTTCTAGACCAT
BO09372.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:17:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3812-RC | 1032 | CG3812-PC | 1..1029 | 17..1045 | 5145 | 100 | Plus |
CG3812-RB | 1032 | CG3812-PB | 1..1029 | 17..1045 | 5145 | 100 | Plus |
CG3812-RA | 1032 | CG3812-PA | 1..1029 | 17..1045 | 5145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3812-RC | 3566 | CG3812-RC | 305..1333 | 17..1045 | 5145 | 100 | Plus |
CG3812-RB | 3795 | CG3812-RB | 534..1562 | 17..1045 | 5145 | 100 | Plus |
CG3812-RA | 1831 | CG3812-RA | 443..1471 | 17..1045 | 5145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12769914..12770618 | 341..1045 | 3525 | 100 | Plus |
X | 23542271 | X | 12767164..12767354 | 17..207 | 955 | 100 | Plus |
X | 23542271 | X | 12769691..12769825 | 208..342 | 675 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 15:17:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2465 | 858..965 | 135 | 58.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2388..2431 | 858..901 | 121 | 75 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2364 | 867..918 | 116 | 69.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2883 | 863..960 | 112 | 57.1 | Plus |
BO09372.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:52 Download gff for
BO09372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3812-RB | 1..1032 | 17..1046 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:32 Download gff for
BO09372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3812-RB | 524..1566 | 7..1052 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:32 Download gff for
BO09372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3812-RA | 443..1471 | 17..1047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:52 Download gff for
BO09372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3812-RB | 524..1566 | 7..1052 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:10 Download gff for
BO09372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3812-RA | 443..1471 | 17..1047 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:10 Download gff for
BO09372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12767164..12767354 | 17..207 | 100 | -> | Plus |
X | 12769691..12769824 | 208..341 | 100 | -> | Plus |
X | 12769915..12770618 | 342..1047 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:32 Download gff for
BO09372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12661197..12661387 | 17..207 | 100 | -> | Plus |
arm_X | 12663724..12663857 | 208..341 | 100 | -> | Plus |
arm_X | 12663948..12664651 | 342..1047 | 99 | | Plus |
BO09372.pep Sequence
Translation from 16 to 1063
> BO09372.pep
MITMTSFIELLGLFLLLMLPFLYETNHIFRYYFKFLMYYGIVSFNSIILI
PAFLTRPCDVRNLLWASTWCHRVSTLIGLRWELRGKEHLAKDQACIIVAN
HQSSLDVLGMFNIWHVMNKCTVVAKRELFYAWPFGLAAWLAGLIFIDRVR
GEKARETLNDVNRRIKKQRIKLWVFPEGTRRNTGALHPFKKGAFHMAIDQ
QIPILPVVFSSYCTFLNDKKKILNSGRIVITTLPPVSTEGLTKDDIDVLM
ERVRSQMIETFKVTSAEALHRYKPIKKVGIPAASSASTSSTTTTTLASPG
TAVTPVADAAVAAAAAVASSSSAYGQPPGYEAGAAKASLLKTLASFLDH
BO09372.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3812-PC | 343 | CG3812-PC | 1..343 | 1..343 | 1767 | 100 | Plus |
CG3812-PB | 343 | CG3812-PB | 1..343 | 1..343 | 1767 | 100 | Plus |
CG3812-PA | 343 | CG3812-PA | 1..343 | 1..343 | 1767 | 100 | Plus |
fu12-PC | 271 | CG17608-PC | 1..261 | 4..267 | 426 | 36 | Plus |
fu12-PD | 271 | CG17608-PD | 1..261 | 4..267 | 426 | 36 | Plus |