Clone BO09372 Report

Search the DGRC for BO09372

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:93
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG3812-RA
Protein status:BO09372.pep: validated full length
Sequenced Size:1063

Clone Sequence Records

BO09372.3prime Sequence

834 bp (818 high quality bases) assembled on 2006-01-18

> BO09372.3prime
ATGGTCTAGAAAGCTTGCAAGTGTCTTGAGCAAGCTGGCCTTTGCGGCTC
CGGCTTCGTAGCCCGGCGGTTGACCGTATGCCGAACTGCTACTGGCCACG
GCAGCTGCGGCAGCCACTGCCGCATCCGCAACGGGAGTGACAGCAGTTCC
CGGTGATGCCAATGTTGTTGTTGTCGTAGATGATGTTGATGCTGATGAGG
CGGCTGGAATTCCAACCTTTTTAATGGGCTTATAACGATGCAACGCCTCC
GCAGACGTCACCTTGAACGTTTCAATCATCTGGGAGCGGACACGCTCCAT
TAGCACATCGATGTCGTCCTTGGTTAGTCCTTCGGTGCTAACCGGCGGCA
GCGTGGTAATCACAATGCGACCCGAATTCAAAATCTTTTTCTTATCATTG
AGGAATGTGCAGTAGGAGGAGAAGACCACCGGCAGAATGGGTATCTGCTG
ATCGATGGCCATGTGAAAGGCGCCCTTTTTGAACGGATGCAGTGCGCCCG
TATTGCGGCGCGTTCCCTCCGGGAAAACCCACAGTTTGATACGTTGCTTC
TTGATGCGCCGGTTAACATCGTTTAGCGTTTCGCGCGCCTTCTCGCCGCG
CACACGATCGATGAAGATTAGGCCAGCCAACCATGCCGCCAAGCCAAAAG
GCCAGGCGTAGAAGAGCTCTCGTTTGGCCACCACTGTGCACTTGTTCATC
ACATGCCAGATGTTGAACATGCCCAGCACATCCAGCGAGCTTTGGTGATT
GGCCACAATGATGCAGGCCTGGTCCTTGGCCAAATGCTCCTTGCCGCGCA
GCTCCCATCGCANGCCAATCAACGTCGAAACGCG

BO09372.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG3812-PA 1032 CG3812-RA 214..1029 834..19 4061 99.8 Minus
CG3812-PB 1032 CG3812-RB 214..1029 834..19 4061 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG3812-RC 3566 CG3812-RC 518..1333 834..19 4069 99.9 Minus
CG3812-RB 3795 CG3812-RB 747..1562 834..19 4069 99.9 Minus
CG3812-RA 1831 CG3812-RA 656..1471 834..19 4069 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:03:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12769914..12770618 723..19 3525 100 Minus
X 23542271 X 12769713..12769825 834..722 554 99.1 Minus
Blast to na_te.dros performed 2015-02-10 19:03:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2358..2465 206..99 135 58.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2388..2431 206..163 121 75 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2313..2364 197..146 116 69.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2883 201..104 112 57.1 Minus

BO09372.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:08:59 Download gff for BO09372.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3812-PB 214..1032 18..834 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:12 Download gff for BO09372.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3812-PB 214..1032 18..834 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:55:37 Download gff for BO09372.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3812-RA 656..1477 12..834 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:29 Download gff for BO09372.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3812-RA 656..1477 12..834 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:29 Download gff for BO09372.3prime
Subject Subject Range Query Range Percent Splice Strand
X 12769713..12769824 723..834 99 -> Minus
X 12769915..12770624 12..722 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:55:37 Download gff for BO09372.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12663746..12663857 723..834 99 -> Minus
arm_X 12663948..12664657 12..722 99   Minus

BO09372.5prime Sequence

853 bp (843 high quality bases) assembled on 2006-01-18

> BO09372.5prime
GAAGTTATCAGTCGACATGATCACCATGACTTCGTTTATCGAACTGCTGG
GACTTTTCTTGCTGCTGATGCTGCCATTCCTCTATGAGACCAATCACATA
TTCCGATACTACTTCAAATTCCTGATGTACTACGGCATCGTGTCGTTCAA
CTCGATCATCCTCATCCCGGCATTCCTCACCAGACCATGCGATGTCCGCA
ATCTGCTATGGGCGAGCACCTGGTGCCACCGCGTTTCGACGTTGATTGGC
CTGCGATGGGAGCTGCGCGGCAAGGAGCATTTGGCCAAGGACCAGGCCTG
CATCATTGTGGCCAATCACCAAAGCTCGCTGGATGTGCTGGGCATGTTCA
ACATCTGGCATGTGATGAACAAGTGCACAGTGGTGGCCAAACGAGAGCTC
TTCTACGCCTGGCCTTTTGGCTTGGCGGCATGGTTGGCTGGCCTAATCTT
CATCGATCGTGTGCGCGGCGAGAAGGCGCGCGAAACGCTAAACGATGTTA
ACCGGCGCATCAAGAAGCAACGTATCAAACTGTGGGTTTTCCCGGAGGGA
ACGCGCCGCAATACGGGCGCACTGCATCCGTTCAAAAAGGGCGCCTTTCA
CATGGCCATCGATCAGCAGATACCCATTCTGCCGGTGGTCTTCTCCTCCT
ACTGCACATTCCTCAATGATAAGAAAAAGATTTTGAATTCGGGTCGCATT
GTGATTACCACGCTGCCGCCGGTTAGCACCGAAGGACTAACCAAGGACGA
CATCGATGTGCTAATGGAGCGTGTCCGCTCCCAGATGATTGAAACGTTCA
AGGTGACGTCTGCGGAGGCGTTGCATCGTTATAAGCCCATTAAAAAAGTT
GGA

BO09372.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG3812-PA 1032 CG3812-RA 1..837 17..853 4160 99.8 Plus
CG3812-PB 1032 CG3812-RB 1..837 17..853 4160 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:56:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3812-RC 3566 CG3812-RC 305..1141 17..853 4170 99.9 Plus
CG3812-RB 3795 CG3812-RB 534..1370 17..853 4170 99.9 Plus
CG3812-RA 1831 CG3812-RA 443..1279 17..853 4170 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12769914..12770426 341..853 2550 99.8 Plus
X 23542271 X 12767164..12767354 17..207 955 100 Plus
X 23542271 X 12769691..12769825 208..342 675 100 Plus
Blast to na_te.dros performed on 2015-02-04 03:56:13 has no hits.

BO09372.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:00 Download gff for BO09372.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3812-PB 1..836 17..852 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:13 Download gff for BO09372.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3812-PB 1..836 17..852 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:58:07 Download gff for BO09372.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3812-RA 435..1278 7..852 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:33:05 Download gff for BO09372.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3812-RA 435..1278 7..852 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:05 Download gff for BO09372.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12769691..12769824 208..341 100 -> Plus
X 12767156..12767354 7..207 98 -> Plus
X 12769915..12770425 342..852 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:58:07 Download gff for BO09372.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12661189..12661387 7..207 98 -> Plus
arm_X 12663724..12663857 208..341 100 -> Plus
arm_X 12663948..12664458 342..852 99   Plus

BO09372.complete Sequence

1063 bp (1063 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631486

> BO09372.complete
GAAGTTATCAGTCGACATGATCACCATGACTTCGTTTATCGAACTGCTGG
GACTTTTCTTGCTGCTGATGCTGCCATTCCTCTATGAGACCAATCACATA
TTCCGATACTACTTCAAATTCCTGATGTACTACGGCATCGTGTCGTTCAA
CTCGATCATCCTCATCCCGGCATTCCTCACCAGACCATGCGATGTCCGCA
ATCTGCTATGGGCGAGCACCTGGTGCCACCGCGTTTCGACGTTGATTGGC
CTGCGATGGGAGCTGCGCGGCAAGGAGCATTTGGCCAAGGACCAGGCCTG
CATCATTGTGGCCAATCACCAAAGCTCGCTGGATGTGCTGGGCATGTTCA
ACATCTGGCATGTGATGAACAAGTGCACAGTGGTGGCCAAACGAGAGCTC
TTCTACGCCTGGCCTTTTGGCTTGGCGGCATGGTTGGCTGGCCTAATCTT
CATCGATCGTGTGCGCGGCGAGAAGGCGCGCGAAACGCTAAACGATGTTA
ACCGGCGCATCAAGAAGCAACGTATCAAACTGTGGGTTTTCCCGGAGGGA
ACGCGCCGCAATACGGGCGCACTGCATCCGTTCAAAAAGGGCGCCTTTCA
CATGGCCATCGATCAGCAGATACCCATTCTGCCGGTGGTCTTCTCCTCCT
ACTGCACATTCCTCAATGATAAGAAAAAGATTTTGAATTCGGGTCGCATT
GTGATTACCACGCTGCCGCCGGTTAGCACCGAAGGACTAACCAAGGACGA
CATCGATGTGCTAATGGAGCGTGTCCGCTCCCAGATGATTGAAACGTTCA
AGGTGACGTCTGCGGAGGCGTTGCATCGTTATAAGCCCATTAAAAAGGTT
GGAATTCCAGCCGCCTCATCAGCATCAACATCATCTACGACAACAACAAC
ATTGGCATCACCGGGAACTGCTGTCACTCCCGTTGCGGATGCGGCAGTGG
CTGCCGCAGCTGCCGTGGCCAGTAGCAGTTCGGCATACGGTCAACCGCCG
GGCTACGAAGCCGGAGCCGCAAAGGCCAGCTTGCTCAAGACACTTGCAAG
CTTTCTAGACCAT

BO09372.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3812-RC 1032 CG3812-PC 1..1029 17..1045 5145 100 Plus
CG3812-RB 1032 CG3812-PB 1..1029 17..1045 5145 100 Plus
CG3812-RA 1032 CG3812-PA 1..1029 17..1045 5145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3812-RC 3566 CG3812-RC 305..1333 17..1045 5145 100 Plus
CG3812-RB 3795 CG3812-RB 534..1562 17..1045 5145 100 Plus
CG3812-RA 1831 CG3812-RA 443..1471 17..1045 5145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12769914..12770618 341..1045 3525 100 Plus
X 23542271 X 12767164..12767354 17..207 955 100 Plus
X 23542271 X 12769691..12769825 208..342 675 100 Plus
Blast to na_te.dros performed 2014-11-27 15:17:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2358..2465 858..965 135 58.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2388..2431 858..901 121 75 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2313..2364 867..918 116 69.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2883 863..960 112 57.1 Plus

BO09372.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:52 Download gff for BO09372.complete
Subject Subject Range Query Range Percent Splice Strand
CG3812-RB 1..1032 17..1046 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:32 Download gff for BO09372.complete
Subject Subject Range Query Range Percent Splice Strand
CG3812-RB 524..1566 7..1052 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:32 Download gff for BO09372.complete
Subject Subject Range Query Range Percent Splice Strand
CG3812-RA 443..1471 17..1047 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:52 Download gff for BO09372.complete
Subject Subject Range Query Range Percent Splice Strand
CG3812-RB 524..1566 7..1052 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:10 Download gff for BO09372.complete
Subject Subject Range Query Range Percent Splice Strand
CG3812-RA 443..1471 17..1047 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:10 Download gff for BO09372.complete
Subject Subject Range Query Range Percent Splice Strand
X 12767164..12767354 17..207 100 -> Plus
X 12769691..12769824 208..341 100 -> Plus
X 12769915..12770618 342..1047 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:32 Download gff for BO09372.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12661197..12661387 17..207 100 -> Plus
arm_X 12663724..12663857 208..341 100 -> Plus
arm_X 12663948..12664651 342..1047 99   Plus

BO09372.pep Sequence

Translation from 16 to 1063

> BO09372.pep
MITMTSFIELLGLFLLLMLPFLYETNHIFRYYFKFLMYYGIVSFNSIILI
PAFLTRPCDVRNLLWASTWCHRVSTLIGLRWELRGKEHLAKDQACIIVAN
HQSSLDVLGMFNIWHVMNKCTVVAKRELFYAWPFGLAAWLAGLIFIDRVR
GEKARETLNDVNRRIKKQRIKLWVFPEGTRRNTGALHPFKKGAFHMAIDQ
QIPILPVVFSSYCTFLNDKKKILNSGRIVITTLPPVSTEGLTKDDIDVLM
ERVRSQMIETFKVTSAEALHRYKPIKKVGIPAASSASTSSTTTTTLASPG
TAVTPVADAAVAAAAAVASSSSAYGQPPGYEAGAAKASLLKTLASFLDH

BO09372.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG3812-PC 343 CG3812-PC 1..343 1..343 1767 100 Plus
CG3812-PB 343 CG3812-PB 1..343 1..343 1767 100 Plus
CG3812-PA 343 CG3812-PA 1..343 1..343 1767 100 Plus
fu12-PC 271 CG17608-PC 1..261 4..267 426 36 Plus
fu12-PD 271 CG17608-PD 1..261 4..267 426 36 Plus