Clone BO09374 Report

Search the DGRC for BO09374

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:93
Well:74
Vector:pDNR-Dual
Associated Gene/Transcriptr-l-RA
Protein status:BO09374.pep: validated full length
Sequenced Size:1513

Clone Sequence Records

BO09374.3prime Sequence

942 bp (803 high quality bases) assembled on 2006-01-18

> BO09374.3prime
ATGGTCTAGAAAGCTTGCCTTGGCAACTCGATCCTGGTAGGCTGCCCACA
GGCGGTCGCGGTACGTCTGAGCCGCCTGCTTCGGGCTGCTGGCCTTCAGA
ATGCCCCTGCCCACCACTCCGATGTCGGCACCCCGCTCCTTGACCACATG
CTCCGGACTCTGGTACTGCTGGCCCAATTGGTCCACGCCCTCGTCTATCT
TCACACCGGGCGTCAGTTGCAGAAGTCCGGGGAAGGCAAAGGCATCGGAG
GATTGGCATACCACACCGGCAACGAAATCTACATCGGCTCCCTCGGTTGC
GATCTTGTTGCTGTTCTCCTTGTACTTGGCGTCGATCAGGTTGCCGCTGG
CAGACATCTCCGCCAGCAGGAAGACGCCGCGTTCCTTGCCGGCTCCTCCT
TCGCCAAGGCCCGCCTTCAGACCCTGCAGAATACTACGTCCAGGTAAGGT
GTGGGCCGTGACCAGATCTGCCCAACTGGAAATCTTATAGATGCCCTTGC
CGTACTGCAGGGACACCGTGTTGCCGATGTCTGCAAACTTGCGATCCTCC
ATCAGCAGGAAATTGTGCCGCTGGGCCAGAGCTTGCAGGTCAGCGATGAA
TTTATCACTGAAATCCTCCACAATGTCTACGTGCGTCTTCAGCAGGCAAA
TGTACGGACCGCACTTGTCGGCCACGTCCAGGATCTCATCGGCGTGTGTC
AGGTCGGCGGCCAAGCAGAGGTTCGTCTGTTTGCTGGCTATCAGGTTGAA
GAGGCGCTTGGCCACCGCGCTCTTAGCCAGATTGGCGCGATTCTCGTAGG
TCAGTTTAGTGCGCTGCAAGTCGTTGGCTCTGACAACGTCGCCCTTATCG
CCGCCGACGAANGTACCATCGCTGTTGATTTGCACGGCGGCGATGTACTT
GGCCACCGCCTCCACTGTGGACTTCTCGATGCGCCCGGCCTC

BO09374.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG3593-PA 1482 r-l-RA 556..1479 942..19 4601 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:00:59
Subject Length Description Subject Range Query Range Score Percent Strand
r-l-RA 2039 CG3593-RA 657..1580 942..19 4609 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:00:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21071016..21071826 19..829 4055 100 Plus
3R 32079331 3R 21072489..21072603 828..942 564 99.1 Plus
Blast to na_te.dros performed on 2015-02-10 22:00:55 has no hits.

BO09374.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:01 Download gff for BO09374.3prime
Subject Subject Range Query Range Percent Splice Strand
r-l-PA 556..1482 18..942 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:14 Download gff for BO09374.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3593-PA 556..1482 18..942 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:58:38 Download gff for BO09374.3prime
Subject Subject Range Query Range Percent Splice Strand
r-l-RA 657..1580 19..942 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:58 Download gff for BO09374.3prime
Subject Subject Range Query Range Percent Splice Strand
r-l-RA 657..1580 19..942 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:58 Download gff for BO09374.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21071016..21071824 19..827 100 <- Plus
3R 21072489..21072603 828..942 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:58:38 Download gff for BO09374.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16896738..16897546 19..827 100 <- Plus
arm_3R 16898211..16898325 828..942 99   Plus

BO09374.5prime Sequence

942 bp (780 high quality bases) assembled on 2006-01-18

> BO09374.5prime
GAAGTTATCAGTCGACATGGTTGCCCAGAACTCCGACAAAATGCGGGCCC
TGGCCCTGAAGCTCTTCGAGATCAATGCCTTCAAGTTCGGCGACTTCAAG
ATGAAAGTGGGCATAAATTCGCCGGTCTACTTCGACCTCCGAGTGATCGT
CAGTTATCCGGATGTGATGCAAACCGTATCCGACCTGCTGGTGGAACACA
TCAAGGACAAGCAGCTGAGCGCCAAACACGTGTGCGGTGTTCCCTACACG
GCGCTCCCGCTGGCCACCATTGTGTCCGTGCAGCAGGGAACTCCCATGCT
GGTGCGGCGCAAGGAGGCCAAGGCGTACGGCACCAAGAAGCTGGTCGAGG
GCATCTTCAATGCTGGCGACACCTGTCTGATTGTCGAGGACGTGGTCACC
TCCGGCTCCAGCATCCTGGACACGGTGCGGGATCTGCAAGGCGAGGGCAT
TGTGGTCACCGACGCCGTGGTCGTCGTAGACCGTGAGCAGGGCGGAGTGG
CCAACATCGCCAAGCACGGCGTGCGGATGCACTCGCTCTTCACGCTCTCC
TTTCTGCTGAACACACTTCACGAGGCCGGGCGCATCGAGAAGTCCACAGT
GGAGGCGGTGGCCAAGTACATCGCCGCCGTGCAAATCAACAGCGATGGTA
CCTTCGTCGGCGGCGATAAGGGCGACGTTGTCAGAGCCAACGACTTGCAG
CGCACTAAACTGACCTACGAGAATCGCGCCAATCTGGCTAAGAGCGCGGT
GGCCAAGCGCCTCTTCAACCTGATAGCCAGCAAACAGACGAACCTCTGCT
TGGCCGCCGACCTGACACACGCCGATGAGATCCTGGACGTGGCCGACCAG
TGCGGGTCGTACATTTGCCTGCTGAAGACGCACGTAGACATTGTGGAGGA
TTCAGTGATAAATTCATCGCTGACCTGCAAGCTCTGGCCCAA

BO09374.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3593-PA 1482 r-l-RA 1..886 17..902 4355 99.6 Plus
CG3593-PA 1482 r-l-RA 886..926 901..941 205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
r-l-RA 2039 CG3593-RA 101..1027 16..941 4565 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:42:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21072489..21073006 686..169 2590 100 Minus
3R 32079331 3R 21071569..21071826 941..685 1195 98.4 Minus
3R 32079331 3R 21073066..21073219 169..16 770 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:42:51 has no hits.

BO09374.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:02 Download gff for BO09374.5prime
Subject Subject Range Query Range Percent Splice Strand
r-l-PA 1..925 17..940 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:16 Download gff for BO09374.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3593-PA 1..925 17..940 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:25:51 Download gff for BO09374.5prime
Subject Subject Range Query Range Percent Splice Strand
r-l-RA 101..1026 16..940 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:25 Download gff for BO09374.5prime
Subject Subject Range Query Range Percent Splice Strand
r-l-RA 101..1026 16..940 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:25 Download gff for BO09374.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21073066..21073219 16..169 100   Minus
3R 21071570..21071824 687..940 98 <- Minus
3R 21072489..21073005 170..686 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:25:51 Download gff for BO09374.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16897292..16897546 687..940 98 <- Minus
arm_3R 16898211..16898727 170..686 100 <- Minus
arm_3R 16898788..16898941 16..169 100   Minus

BO09374.complete Sequence

1513 bp (1513 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631487

> BO09374.complete
GAAGTTATCAGTCGACATGGTTGCCCAGAACTCCGACAAAATGCGGGCCC
TGGCCCTGAAGCTCTTCGAGATCAATGCCTTCAAGTTCGGCGACTTCAAG
ATGAAAGTGGGCATAAATTCGCCGGTCTACTTCGACCTCCGAGTGATCGT
CAGTTATCCGGATGTGATGCAAACCGTATCCGACCTGCTGGTGGAACACA
TCAAGGACAAGCAGCTGAGCGCCAAACACGTGTGCGGTGTTCCCTACACG
GCGCTCCCGCTGGCCACCATTGTGTCCGTGCAGCAGGGAACTCCCATGCT
GGTGCGGCGCAAGGAGGCCAAGGCGTACGGCACCAAGAAGCTGGTCGAGG
GCATCTTCAATGCTGGCGACACCTGTCTGATTGTCGAGGACGTGGTCACC
TCCGGCTCCAGCATCCTGGACACGGTGCGGGATCTGCAAGGCGAGGGCAT
TGTGGTCACCGACGCCGTGGTCGTCGTAGACCGTGAGCAGGGCGGAGTGG
CCAACATCGCCAAGCACGGCGTGCGGATGCACTCGCTCTTCACGCTCTCC
TTTCTGCTGAACACACTTCACGAGGCCGGGCGCATCGAGAAGTCCACAGT
GGAGGCGGTGGCCAAGTACATCGCCGCCGTGCAAATCAACAGCGATGGTA
CCTTCGTCGGCGGCGATAAGGGCGACGTTGTCAGAGCCAACGACTTGCAG
CGCACTAAACTGACCTACGAGAATCGCGCCAATCTGGCTAAGAGCGCGGT
GGCCAAGCGCCTCTTCAACCTGATAGCCAGCAAACAGACGAACCTCTGCT
TGGCCGCCGACCTGACACACGCCGATGAGATCCTGGACGTGGCCGACAAG
TGCGGTCCGTACATTTGCCTGCTGAAGACGCACGTAGACATTGTGGAGGA
TTTCAGTGATAAATTCATCGCTGACCTGCAAGCTCTGGCCCAGCGGCACA
ATTTCCTGCTGATGGAGGATCGCAAGTTTGCAGACATCGGCAACACGGTG
TCCCTGCAGTACGGCAAGGGCATCTATAAGATTTCCAGTTGGGCAGATCT
GGTCACGGCCCACACCTTACCTGGACGTAGTATTCTGCAGGGTCTGAAGG
CGGGCCTTGGCGAAGGAGGAGCCGGCAAGGAACGCGGCGTCTTCCTGCTG
GCGGAGATGTCTGCCAGCGGCAACCTGATCGACGCCAAGTACAAGGAGAA
CAGCAACAAGATCGCAACCGAGGGAGCCGATGTAGATTTCGTTGCCGGTG
TGGTATGCCAATCCTCCGATGCCTTTGCCTTCCCCGGACTTCTGCAACTG
ACGCCCGGTGTGAAGATAGACGAGGGCGTGGACCAATTGGGCCAGCAGTA
CCAGAGTCCGGAGCATGTGGTCAAGGAGCGGGGTGCCGACATCGGAGTGG
TGGGCAGGGGCATTCTGAAGGCCAGCAGCCCGAAGCAGGCGGCTCAGACG
TACCGCGACCGCCTGTGGGCAGCCTACCAGGATCGAGTTGCCAAGGCAAG
CTTTCTAGACCAT

BO09374.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
r-l-RA 1482 CG3593-PA 1..1479 17..1495 7395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
r-l-RA 2039 CG3593-RA 101..1580 16..1495 7400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21071016..21071826 1495..685 4055 100 Minus
3R 32079331 3R 21072489..21073006 686..169 2590 100 Minus
3R 32079331 3R 21073066..21073219 169..16 770 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:43:36 has no hits.

BO09374.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:53 Download gff for BO09374.complete
Subject Subject Range Query Range Percent Splice Strand
r-l-RA 1..1482 17..1496 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:34 Download gff for BO09374.complete
Subject Subject Range Query Range Percent Splice Strand
r-l-RA 99..1578 16..1495 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:08:10 Download gff for BO09374.complete
Subject Subject Range Query Range Percent Splice Strand
r-l-RA 102..1580 17..1497 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:56 Download gff for BO09374.complete
Subject Subject Range Query Range Percent Splice Strand
r-l-RA 99..1578 16..1495 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:59 Download gff for BO09374.complete
Subject Subject Range Query Range Percent Splice Strand
r-l-RA 102..1580 17..1497 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:59 Download gff for BO09374.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21071014..21071824 687..1497 99 <- Minus
3R 21072489..21073005 170..686 100 <- Minus
3R 21073066..21073218 17..169 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:08:10 Download gff for BO09374.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16898788..16898940 17..169 100   Minus
arm_3R 16896736..16897546 687..1497 99 <- Minus
arm_3R 16898211..16898727 170..686 100 <- Minus

BO09374.pep Sequence

Translation from 16 to 1513

> BO09374.pep
MVAQNSDKMRALALKLFEINAFKFGDFKMKVGINSPVYFDLRVIVSYPDV
MQTVSDLLVEHIKDKQLSAKHVCGVPYTALPLATIVSVQQGTPMLVRRKE
AKAYGTKKLVEGIFNAGDTCLIVEDVVTSGSSILDTVRDLQGEGIVVTDA
VVVVDREQGGVANIAKHGVRMHSLFTLSFLLNTLHEAGRIEKSTVEAVAK
YIAAVQINSDGTFVGGDKGDVVRANDLQRTKLTYENRANLAKSAVAKRLF
NLIASKQTNLCLAADLTHADEILDVADKCGPYICLLKTHVDIVEDFSDKF
IADLQALAQRHNFLLMEDRKFADIGNTVSLQYGKGIYKISSWADLVTAHT
LPGRSILQGLKAGLGEGGAGKERGVFLLAEMSASGNLIDAKYKENSNKIA
TEGADVDFVAGVVCQSSDAFAFPGLLQLTPGVKIDEGVDQLGQQYQSPEH
VVKERGADIGVVGRGILKASSPKQAAQTYRDRLWAAYQDRVAKASFLDH

BO09374.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:45
Subject Length Description Subject Range Query Range Score Percent Strand
r-l-PA 493 CG3593-PA 1..493 1..493 2486 100 Plus