Clone Sequence Records
BO09374.3prime Sequence
942 bp (803 high quality bases) assembled on 2006-01-18
> BO09374.3prime
ATGGTCTAGAAAGCTTGCCTTGGCAACTCGATCCTGGTAGGCTGCCCACA
GGCGGTCGCGGTACGTCTGAGCCGCCTGCTTCGGGCTGCTGGCCTTCAGA
ATGCCCCTGCCCACCACTCCGATGTCGGCACCCCGCTCCTTGACCACATG
CTCCGGACTCTGGTACTGCTGGCCCAATTGGTCCACGCCCTCGTCTATCT
TCACACCGGGCGTCAGTTGCAGAAGTCCGGGGAAGGCAAAGGCATCGGAG
GATTGGCATACCACACCGGCAACGAAATCTACATCGGCTCCCTCGGTTGC
GATCTTGTTGCTGTTCTCCTTGTACTTGGCGTCGATCAGGTTGCCGCTGG
CAGACATCTCCGCCAGCAGGAAGACGCCGCGTTCCTTGCCGGCTCCTCCT
TCGCCAAGGCCCGCCTTCAGACCCTGCAGAATACTACGTCCAGGTAAGGT
GTGGGCCGTGACCAGATCTGCCCAACTGGAAATCTTATAGATGCCCTTGC
CGTACTGCAGGGACACCGTGTTGCCGATGTCTGCAAACTTGCGATCCTCC
ATCAGCAGGAAATTGTGCCGCTGGGCCAGAGCTTGCAGGTCAGCGATGAA
TTTATCACTGAAATCCTCCACAATGTCTACGTGCGTCTTCAGCAGGCAAA
TGTACGGACCGCACTTGTCGGCCACGTCCAGGATCTCATCGGCGTGTGTC
AGGTCGGCGGCCAAGCAGAGGTTCGTCTGTTTGCTGGCTATCAGGTTGAA
GAGGCGCTTGGCCACCGCGCTCTTAGCCAGATTGGCGCGATTCTCGTAGG
TCAGTTTAGTGCGCTGCAAGTCGTTGGCTCTGACAACGTCGCCCTTATCG
CCGCCGACGAANGTACCATCGCTGTTGATTTGCACGGCGGCGATGTACTT
GGCCACCGCCTCCACTGTGGACTTCTCGATGCGCCCGGCCTC
BO09374.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3593-PA | 1482 | r-l-RA | 556..1479 | 942..19 | 4601 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:00:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
r-l-RA | 2039 | CG3593-RA | 657..1580 | 942..19 | 4609 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:00:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21071016..21071826 | 19..829 | 4055 | 100 | Plus |
3R | 32079331 | 3R | 21072489..21072603 | 828..942 | 564 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:00:55 has no hits.
BO09374.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:01 Download gff for
BO09374.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
r-l-PA | 556..1482 | 18..942 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:14 Download gff for
BO09374.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3593-PA | 556..1482 | 18..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:58:38 Download gff for
BO09374.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
r-l-RA | 657..1580 | 19..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:58 Download gff for
BO09374.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
r-l-RA | 657..1580 | 19..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:58 Download gff for
BO09374.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21071016..21071824 | 19..827 | 100 | <- | Plus |
3R | 21072489..21072603 | 828..942 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:58:38 Download gff for
BO09374.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16896738..16897546 | 19..827 | 100 | <- | Plus |
arm_3R | 16898211..16898325 | 828..942 | 99 | | Plus |
BO09374.5prime Sequence
942 bp (780 high quality bases) assembled on 2006-01-18
> BO09374.5prime
GAAGTTATCAGTCGACATGGTTGCCCAGAACTCCGACAAAATGCGGGCCC
TGGCCCTGAAGCTCTTCGAGATCAATGCCTTCAAGTTCGGCGACTTCAAG
ATGAAAGTGGGCATAAATTCGCCGGTCTACTTCGACCTCCGAGTGATCGT
CAGTTATCCGGATGTGATGCAAACCGTATCCGACCTGCTGGTGGAACACA
TCAAGGACAAGCAGCTGAGCGCCAAACACGTGTGCGGTGTTCCCTACACG
GCGCTCCCGCTGGCCACCATTGTGTCCGTGCAGCAGGGAACTCCCATGCT
GGTGCGGCGCAAGGAGGCCAAGGCGTACGGCACCAAGAAGCTGGTCGAGG
GCATCTTCAATGCTGGCGACACCTGTCTGATTGTCGAGGACGTGGTCACC
TCCGGCTCCAGCATCCTGGACACGGTGCGGGATCTGCAAGGCGAGGGCAT
TGTGGTCACCGACGCCGTGGTCGTCGTAGACCGTGAGCAGGGCGGAGTGG
CCAACATCGCCAAGCACGGCGTGCGGATGCACTCGCTCTTCACGCTCTCC
TTTCTGCTGAACACACTTCACGAGGCCGGGCGCATCGAGAAGTCCACAGT
GGAGGCGGTGGCCAAGTACATCGCCGCCGTGCAAATCAACAGCGATGGTA
CCTTCGTCGGCGGCGATAAGGGCGACGTTGTCAGAGCCAACGACTTGCAG
CGCACTAAACTGACCTACGAGAATCGCGCCAATCTGGCTAAGAGCGCGGT
GGCCAAGCGCCTCTTCAACCTGATAGCCAGCAAACAGACGAACCTCTGCT
TGGCCGCCGACCTGACACACGCCGATGAGATCCTGGACGTGGCCGACCAG
TGCGGGTCGTACATTTGCCTGCTGAAGACGCACGTAGACATTGTGGAGGA
TTCAGTGATAAATTCATCGCTGACCTGCAAGCTCTGGCCCAA
BO09374.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3593-PA | 1482 | r-l-RA | 1..886 | 17..902 | 4355 | 99.6 | Plus |
CG3593-PA | 1482 | r-l-RA | 886..926 | 901..941 | 205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:42:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
r-l-RA | 2039 | CG3593-RA | 101..1027 | 16..941 | 4565 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:42:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21072489..21073006 | 686..169 | 2590 | 100 | Minus |
3R | 32079331 | 3R | 21071569..21071826 | 941..685 | 1195 | 98.4 | Minus |
3R | 32079331 | 3R | 21073066..21073219 | 169..16 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:42:51 has no hits.
BO09374.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:02 Download gff for
BO09374.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
r-l-PA | 1..925 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:16 Download gff for
BO09374.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3593-PA | 1..925 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:25:51 Download gff for
BO09374.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
r-l-RA | 101..1026 | 16..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:25 Download gff for
BO09374.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
r-l-RA | 101..1026 | 16..940 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:25 Download gff for
BO09374.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21073066..21073219 | 16..169 | 100 | | Minus |
3R | 21071570..21071824 | 687..940 | 98 | <- | Minus |
3R | 21072489..21073005 | 170..686 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:25:51 Download gff for
BO09374.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16897292..16897546 | 687..940 | 98 | <- | Minus |
arm_3R | 16898211..16898727 | 170..686 | 100 | <- | Minus |
arm_3R | 16898788..16898941 | 16..169 | 100 | | Minus |
BO09374.complete Sequence
1513 bp (1513 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631487
> BO09374.complete
GAAGTTATCAGTCGACATGGTTGCCCAGAACTCCGACAAAATGCGGGCCC
TGGCCCTGAAGCTCTTCGAGATCAATGCCTTCAAGTTCGGCGACTTCAAG
ATGAAAGTGGGCATAAATTCGCCGGTCTACTTCGACCTCCGAGTGATCGT
CAGTTATCCGGATGTGATGCAAACCGTATCCGACCTGCTGGTGGAACACA
TCAAGGACAAGCAGCTGAGCGCCAAACACGTGTGCGGTGTTCCCTACACG
GCGCTCCCGCTGGCCACCATTGTGTCCGTGCAGCAGGGAACTCCCATGCT
GGTGCGGCGCAAGGAGGCCAAGGCGTACGGCACCAAGAAGCTGGTCGAGG
GCATCTTCAATGCTGGCGACACCTGTCTGATTGTCGAGGACGTGGTCACC
TCCGGCTCCAGCATCCTGGACACGGTGCGGGATCTGCAAGGCGAGGGCAT
TGTGGTCACCGACGCCGTGGTCGTCGTAGACCGTGAGCAGGGCGGAGTGG
CCAACATCGCCAAGCACGGCGTGCGGATGCACTCGCTCTTCACGCTCTCC
TTTCTGCTGAACACACTTCACGAGGCCGGGCGCATCGAGAAGTCCACAGT
GGAGGCGGTGGCCAAGTACATCGCCGCCGTGCAAATCAACAGCGATGGTA
CCTTCGTCGGCGGCGATAAGGGCGACGTTGTCAGAGCCAACGACTTGCAG
CGCACTAAACTGACCTACGAGAATCGCGCCAATCTGGCTAAGAGCGCGGT
GGCCAAGCGCCTCTTCAACCTGATAGCCAGCAAACAGACGAACCTCTGCT
TGGCCGCCGACCTGACACACGCCGATGAGATCCTGGACGTGGCCGACAAG
TGCGGTCCGTACATTTGCCTGCTGAAGACGCACGTAGACATTGTGGAGGA
TTTCAGTGATAAATTCATCGCTGACCTGCAAGCTCTGGCCCAGCGGCACA
ATTTCCTGCTGATGGAGGATCGCAAGTTTGCAGACATCGGCAACACGGTG
TCCCTGCAGTACGGCAAGGGCATCTATAAGATTTCCAGTTGGGCAGATCT
GGTCACGGCCCACACCTTACCTGGACGTAGTATTCTGCAGGGTCTGAAGG
CGGGCCTTGGCGAAGGAGGAGCCGGCAAGGAACGCGGCGTCTTCCTGCTG
GCGGAGATGTCTGCCAGCGGCAACCTGATCGACGCCAAGTACAAGGAGAA
CAGCAACAAGATCGCAACCGAGGGAGCCGATGTAGATTTCGTTGCCGGTG
TGGTATGCCAATCCTCCGATGCCTTTGCCTTCCCCGGACTTCTGCAACTG
ACGCCCGGTGTGAAGATAGACGAGGGCGTGGACCAATTGGGCCAGCAGTA
CCAGAGTCCGGAGCATGTGGTCAAGGAGCGGGGTGCCGACATCGGAGTGG
TGGGCAGGGGCATTCTGAAGGCCAGCAGCCCGAAGCAGGCGGCTCAGACG
TACCGCGACCGCCTGTGGGCAGCCTACCAGGATCGAGTTGCCAAGGCAAG
CTTTCTAGACCAT
BO09374.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:43:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
r-l-RA | 1482 | CG3593-PA | 1..1479 | 17..1495 | 7395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:43:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
r-l-RA | 2039 | CG3593-RA | 101..1580 | 16..1495 | 7400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:43:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21071016..21071826 | 1495..685 | 4055 | 100 | Minus |
3R | 32079331 | 3R | 21072489..21073006 | 686..169 | 2590 | 100 | Minus |
3R | 32079331 | 3R | 21073066..21073219 | 169..16 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:43:36 has no hits.
BO09374.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:53 Download gff for
BO09374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
r-l-RA | 1..1482 | 17..1496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:34 Download gff for
BO09374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
r-l-RA | 99..1578 | 16..1495 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:08:10 Download gff for
BO09374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
r-l-RA | 102..1580 | 17..1497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:56 Download gff for
BO09374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
r-l-RA | 99..1578 | 16..1495 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:59 Download gff for
BO09374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
r-l-RA | 102..1580 | 17..1497 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:59 Download gff for
BO09374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21071014..21071824 | 687..1497 | 99 | <- | Minus |
3R | 21072489..21073005 | 170..686 | 100 | <- | Minus |
3R | 21073066..21073218 | 17..169 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:08:10 Download gff for
BO09374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16898788..16898940 | 17..169 | 100 | | Minus |
arm_3R | 16896736..16897546 | 687..1497 | 99 | <- | Minus |
arm_3R | 16898211..16898727 | 170..686 | 100 | <- | Minus |
BO09374.pep Sequence
Translation from 16 to 1513
> BO09374.pep
MVAQNSDKMRALALKLFEINAFKFGDFKMKVGINSPVYFDLRVIVSYPDV
MQTVSDLLVEHIKDKQLSAKHVCGVPYTALPLATIVSVQQGTPMLVRRKE
AKAYGTKKLVEGIFNAGDTCLIVEDVVTSGSSILDTVRDLQGEGIVVTDA
VVVVDREQGGVANIAKHGVRMHSLFTLSFLLNTLHEAGRIEKSTVEAVAK
YIAAVQINSDGTFVGGDKGDVVRANDLQRTKLTYENRANLAKSAVAKRLF
NLIASKQTNLCLAADLTHADEILDVADKCGPYICLLKTHVDIVEDFSDKF
IADLQALAQRHNFLLMEDRKFADIGNTVSLQYGKGIYKISSWADLVTAHT
LPGRSILQGLKAGLGEGGAGKERGVFLLAEMSASGNLIDAKYKENSNKIA
TEGADVDFVAGVVCQSSDAFAFPGLLQLTPGVKIDEGVDQLGQQYQSPEH
VVKERGADIGVVGRGILKASSPKQAAQTYRDRLWAAYQDRVAKASFLDH
BO09374.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
r-l-PA | 493 | CG3593-PA | 1..493 | 1..493 | 2486 | 100 | Plus |