Clone Sequence Records
BO09376.3prime Sequence
940 bp (823 high quality bases) assembled on 2006-01-18
> BO09376.3prime
ATGGTCTAGAAAGCTTGCGGCCGGATTAAGCACGGCCACCTTGCGTAGGC
TCTCTAGCTCGCTTCTCTTCAAACGCAGACTGAACATGGCCTCAACAAAG
CCATGACAGTCCGTCACAATGTTGTCCTGGATCATGGTATCCCGGAATAG
ATTGGCCAGGGCAGCAATATCATCACAGCCCAGAATGGCGTTCTTGTGAG
TGACGAACATGGTTAGGGCGGCACGAAAAACGATCTTGTAGCCCTCGGCA
AAGACACAGTCCCATATACGTAGCACAGTCTCCACGGGCAGCACCTCGGC
AAAGATGCAGATGAACCATTTGCTGGCGATCACCGGATAGGGCAGGCCCA
AGTTATCCACATGCCGATTTACAGCGGGAATTCGCCGGATGACCAATTCG
CGGAACACGGCCAGATCCCTCAGCAGATTGGCCATATTATGGGAATGGTA
TTGCGGCACGATGTTTTCAACGATATGCTTGAGCAGCCAAAAGGACTTCT
CCTCATCGTCGGTGACGATCAACAGGAGGCCGGCTATGTAGTTAAGACCT
TGGCAGTAACCCACGTCCCGATTGTGATGGGCGTAGGCGATGAGAATGTT
GTACAACCGCTGCTTCTTCATATCGAAGTGAATATTGTCGGGGAAGGTAC
GAGGTAGATCGATTGATATGGAATCGCTGATTTCTTTGTCGAAGGGCTCG
GTGCGCAGAAGGTTGCGAAAGAGATCCGGCGAGCGACGCTGGGCGGCGGC
AGCTCCAGATATCTTCATCCAGACGTCGGGACGGTATGGACCAGGAATGC
CCTTCCGAATGTACCGCTTCAGCTTGGCGTCCACCTGGGTGAGATCGGTA
TTTTGCTGCAGAATGGGCCTCCATTTCATGCGGCGCCGCGTTAACGTTTT
CAGGTAACCATCCATGAACTTTGAGTAGTTGTTATAGTCG
BO09376.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5916-PA | 993 | CG5916-RA | 143..990 | 866..19 | 4240 | 100 | Minus |
CG5916-PA | 993 | CG5916-RA | 69..138 | 940..871 | 350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:57:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5916-RB | 2396 | CG5916-RB | 602..1523 | 940..19 | 4565 | 99.8 | Minus |
CG5916-RA | 2146 | CG5916-RA | 599..1520 | 940..19 | 4565 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:57:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16147782..16148375 | 940..347 | 2925 | 99.5 | Minus |
3R | 32079331 | 3R | 16148434..16148763 | 348..19 | 1650 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 13:57:56 has no hits.
BO09376.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:06 Download gff for
BO09376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5916-PA | 69..993 | 15..940 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:19 Download gff for
BO09376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5916-PA | 69..993 | 15..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:51:05 Download gff for
BO09376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5916-RA | 612..1537 | 14..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:32:19 Download gff for
BO09376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5916-RA | 599..1524 | 14..940 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:32:19 Download gff for
BO09376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16147782..16148374 | 348..940 | 99 | -> | Minus |
3R | 16148435..16148767 | 14..347 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:51:05 Download gff for
BO09376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11973504..11974096 | 348..940 | 99 | -> | Minus |
arm_3R | 11974157..11974489 | 14..347 | 99 | | Minus |
BO09376.5prime Sequence
899 bp (854 high quality bases) assembled on 2006-01-18
> BO09376.5prime
GAAGTTATCAGTCGACATGGATGCTACCGCAAGTTCAAAGTTCAGCGATG
TGGACGAATATGGCTTCAAGCGTGGCGACCACTTCGACTATAACAACTAC
TCAAAGTTCATGGATGGTTACCTGAAAACGTTAACGCGGCGCCGCATGAA
ATGGGAGGCCATTCTGCAGCAAAATACCGATCTCACCCAGGTGGACGCCA
AGCTGAAGCGGTACATTCGGAAGGGCATTCCTGGTCCATACCGTCCCGAC
GTCTGGATGAAGATATCTGGAGCTGCCGCCGCCCAGCGTCGCTCGCCGGA
TCTCTTTCGCAACCTTCTGCGCACCGAGCCCTTCGACAAAGAAATCAGCG
ATTCCATATCAATCGATCTACCTCGTACCTTCCCCGACAATATTCACTTC
GATATGAAGAAGCAGCGGTTGTACAACATTCTCATCGCCTACGCCCATCA
CAATCGGGACGTGGGTTACTGCCAAGGTCTTAACTACATAGCCGGCCTCC
TGTTGATCGTCACCGACGATGAGGAGAAGTCCTTTTGGCTGCTCAAGCAT
ATCGTTGAAAACATCGTGCCGCAATACCATTCCCATAATATGGCCAATCT
GCTGAGGGATCTGGCCGTGTTCCGCGAATTGGTCATCCGGCGAATTCCCG
CTGTAAATCGGCATGTGGATAACTTGGGCCTGCCCTATCCGGTGATCGCC
AGCAAATGGTTCATCTGCATCTTTGCCGAGGTGCTGCCCGTGGAGACTGT
GCTACGTATATGGGACTGTGTCTTTGCCGAGGGCTACAAGATCGTTTTTC
GTGCCGCCCTAACCATGTTCGTCACTCACAAGAACGCCATTCTGGGCTGT
GATGATATTGCTGCCCTGGCCAATCTATTCCGGGATACCATGATCCAAG
BO09376.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5916-PA | 993 | CG5916-RA | 1..881 | 17..897 | 4405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:38:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5916-RB | 2396 | CG5916-RB | 534..1414 | 17..897 | 4405 | 100 | Plus |
CG5916-RA | 2146 | CG5916-RA | 531..1411 | 17..897 | 4405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:38:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16147741..16148375 | 44..678 | 3175 | 100 | Plus |
3R | 32079331 | 3R | 16148434..16148654 | 677..897 | 1105 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:38:56 has no hits.
BO09376.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:07 Download gff for
BO09376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5916-PA | 1..882 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:21 Download gff for
BO09376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5916-PA | 1..882 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:26:20 Download gff for
BO09376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5916-RA | 535..1425 | 7..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:54:05 Download gff for
BO09376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5916-RA | 522..1412 | 7..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:54:05 Download gff for
BO09376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16147743..16148374 | 46..677 | 100 | -> | Plus |
3R | 16148435..16148655 | 678..899 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:26:20 Download gff for
BO09376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11973465..11974096 | 46..677 | 100 | -> | Plus |
arm_3R | 11974157..11974377 | 678..899 | 99 | | Plus |
BO09376.complete Sequence
1024 bp (1024 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ638668
> BO09376.complete
GAAGTTATCAGTCGACATGGATGCTACCGCAAGTTCAAAGTTCAGCGATG
TGGACGAATATGGCTTCAAGCGTGGCGACCACTTCGACTATAACAACTAC
TCAAAGTTCATGGATGGTTACCTGAAAACGTTAACGCGGCGCCGCATGAA
ATGGGAGGCCATTCTGCAGCAAAATACCGATCTCACCCAGGTGGACGCCA
AGCTGAAGCGGTACATTCGGAAGGGCATTCCTGGTCCATACCGTCCCGAC
GTCTGGATGAAGATATCTGGAGCTGCCGCCGCCCAGCGTCGCTCGCCGGA
TCTCTTTCGCAACCTTCTGCGCACCGAGCCCTTCGACAAAGAAATCAGCG
ATTCCATATCAATCGATCTACCTCGTACCTTCCCCGACAATATTCACTTC
GATATGAAGAAGCAGCGGTTGTACAACATTCTCATCGCCTACGCCCATCA
CAATCGGGACGTGGGTTACTGCCAAGGTCTTAACTACATAGCCGGCCTCC
TGTTGATCGTCACCGACGATGAGGAGAAGTCCTTTTGGCTGCTCAAGCAT
ATCGTTGAAAACATCGTGCCGCAATACCATTCCCATAATATGGCCAATCT
GCTGAGGGATCTGGCCGTGTTCCGCGAATTGGTCATCCGGCGAATTCCCG
CTGTAAATCGGCATGTGGATAACTTGGGCCTGCCCTATCCGGTGATCGCC
AGCAAATGGTTCATCTGCATCTTTGCCGAGGTGCTGCCCGTGGAGACTGT
GCTACGTATATGGGACTGTGTCTTTGCCGAGGGCTACAAGATCGTTTTTC
GTGCCGCCCTAACCATGTTCGTCACTCACAAGAACGCCATTCTGGGCTGT
GATGATATTGCTGCCCTGGCCAATCTATTCCGGGATACCATGATCCAGGA
CAACATTGTGACGGACTGTCATGGCTTTGTTGAGGCCATGTTCAGTCTGC
GTTTGAAGAGAAGCGAGCTAGAGAGCCTACGCAAGGTGGCCGTGCTTAAT
CCGGCCGCAAGCTTTCTAGACCAT
BO09376.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:32:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5916-RB | 993 | CG5916-PB | 1..990 | 17..1006 | 4950 | 100 | Plus |
CG5916-RA | 993 | CG5916-PA | 1..990 | 17..1006 | 4950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:32:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5916-RB | 2396 | CG5916-RB | 534..1523 | 17..1006 | 4950 | 100 | Plus |
CG5916-RA | 2146 | CG5916-RA | 531..1520 | 17..1006 | 4950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16147741..16148375 | 44..678 | 3175 | 100 | Plus |
3R | 32079331 | 3R | 16148434..16148763 | 677..1006 | 1650 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:32:25 has no hits.
BO09376.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:33 Download gff for
BO09376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5916-RA | 1..993 | 17..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:05 Download gff for
BO09376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5916-RA | 535..1537 | 7..1011 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:36 Download gff for
BO09376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5916-RA | 544..1533 | 17..1008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:33 Download gff for
BO09376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5916-RA | 535..1537 | 7..1011 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:37 Download gff for
BO09376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5916-RA | 531..1520 | 17..1008 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:37 Download gff for
BO09376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16147642..16147670 | 17..45 | 100 | -> | Plus |
3R | 16147743..16148374 | 46..677 | 100 | -> | Plus |
3R | 16148435..16148763 | 678..1008 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:36 Download gff for
BO09376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11973364..11973392 | 17..45 | 100 | -> | Plus |
arm_3R | 11973465..11974096 | 46..677 | 100 | -> | Plus |
arm_3R | 11974157..11974485 | 678..1008 | 99 | | Plus |
BO09376.pep Sequence
Translation from 16 to 1024
> BO09376.pep
MDATASSKFSDVDEYGFKRGDHFDYNNYSKFMDGYLKTLTRRRMKWEAIL
QQNTDLTQVDAKLKRYIRKGIPGPYRPDVWMKISGAAAAQRRSPDLFRNL
LRTEPFDKEISDSISIDLPRTFPDNIHFDMKKQRLYNILIAYAHHNRDVG
YCQGLNYIAGLLLIVTDDEEKSFWLLKHIVENIVPQYHSHNMANLLRDLA
VFRELVIRRIPAVNRHVDNLGLPYPVIASKWFICIFAEVLPVETVLRIWD
CVFAEGYKIVFRAALTMFVTHKNAILGCDDIAALANLFRDTMIQDNIVTD
CHGFVEAMFSLRLKRSELESLRKVAVLNPAASFLDH
BO09376.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5916-PB | 330 | CG5916-PB | 1..330 | 1..330 | 1734 | 100 | Plus |
CG5916-PA | 330 | CG5916-PA | 1..330 | 1..330 | 1734 | 100 | Plus |
CG7324-PB | 1256 | CG7324-PB | 459..674 | 67..280 | 329 | 33.9 | Plus |
CG7324-PA | 1291 | CG7324-PA | 459..674 | 67..280 | 329 | 33.9 | Plus |
Evi5-PC | 773 | CG11727-PC | 98..365 | 46..323 | 304 | 26.6 | Plus |