Clone BO09376 Report

Search the DGRC for BO09376

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:93
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG5916-RA
Protein status:BO09376.pep: validated full length
Sequenced Size:1024

Clone Sequence Records

BO09376.3prime Sequence

940 bp (823 high quality bases) assembled on 2006-01-18

> BO09376.3prime
ATGGTCTAGAAAGCTTGCGGCCGGATTAAGCACGGCCACCTTGCGTAGGC
TCTCTAGCTCGCTTCTCTTCAAACGCAGACTGAACATGGCCTCAACAAAG
CCATGACAGTCCGTCACAATGTTGTCCTGGATCATGGTATCCCGGAATAG
ATTGGCCAGGGCAGCAATATCATCACAGCCCAGAATGGCGTTCTTGTGAG
TGACGAACATGGTTAGGGCGGCACGAAAAACGATCTTGTAGCCCTCGGCA
AAGACACAGTCCCATATACGTAGCACAGTCTCCACGGGCAGCACCTCGGC
AAAGATGCAGATGAACCATTTGCTGGCGATCACCGGATAGGGCAGGCCCA
AGTTATCCACATGCCGATTTACAGCGGGAATTCGCCGGATGACCAATTCG
CGGAACACGGCCAGATCCCTCAGCAGATTGGCCATATTATGGGAATGGTA
TTGCGGCACGATGTTTTCAACGATATGCTTGAGCAGCCAAAAGGACTTCT
CCTCATCGTCGGTGACGATCAACAGGAGGCCGGCTATGTAGTTAAGACCT
TGGCAGTAACCCACGTCCCGATTGTGATGGGCGTAGGCGATGAGAATGTT
GTACAACCGCTGCTTCTTCATATCGAAGTGAATATTGTCGGGGAAGGTAC
GAGGTAGATCGATTGATATGGAATCGCTGATTTCTTTGTCGAAGGGCTCG
GTGCGCAGAAGGTTGCGAAAGAGATCCGGCGAGCGACGCTGGGCGGCGGC
AGCTCCAGATATCTTCATCCAGACGTCGGGACGGTATGGACCAGGAATGC
CCTTCCGAATGTACCGCTTCAGCTTGGCGTCCACCTGGGTGAGATCGGTA
TTTTGCTGCAGAATGGGCCTCCATTTCATGCGGCGCCGCGTTAACGTTTT
CAGGTAACCATCCATGAACTTTGAGTAGTTGTTATAGTCG

BO09376.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5916-PA 993 CG5916-RA 143..990 866..19 4240 100 Minus
CG5916-PA 993 CG5916-RA 69..138 940..871 350 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5916-RB 2396 CG5916-RB 602..1523 940..19 4565 99.8 Minus
CG5916-RA 2146 CG5916-RA 599..1520 940..19 4565 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:57:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16147782..16148375 940..347 2925 99.5 Minus
3R 32079331 3R 16148434..16148763 348..19 1650 100 Minus
Blast to na_te.dros performed on 2015-02-08 13:57:56 has no hits.

BO09376.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:06 Download gff for BO09376.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5916-PA 69..993 15..940 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:19 Download gff for BO09376.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5916-PA 69..993 15..940 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:51:05 Download gff for BO09376.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5916-RA 612..1537 14..940 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:32:19 Download gff for BO09376.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5916-RA 599..1524 14..940 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:32:19 Download gff for BO09376.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16147782..16148374 348..940 99 -> Minus
3R 16148435..16148767 14..347 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:51:05 Download gff for BO09376.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11973504..11974096 348..940 99 -> Minus
arm_3R 11974157..11974489 14..347 99   Minus

BO09376.5prime Sequence

899 bp (854 high quality bases) assembled on 2006-01-18

> BO09376.5prime
GAAGTTATCAGTCGACATGGATGCTACCGCAAGTTCAAAGTTCAGCGATG
TGGACGAATATGGCTTCAAGCGTGGCGACCACTTCGACTATAACAACTAC
TCAAAGTTCATGGATGGTTACCTGAAAACGTTAACGCGGCGCCGCATGAA
ATGGGAGGCCATTCTGCAGCAAAATACCGATCTCACCCAGGTGGACGCCA
AGCTGAAGCGGTACATTCGGAAGGGCATTCCTGGTCCATACCGTCCCGAC
GTCTGGATGAAGATATCTGGAGCTGCCGCCGCCCAGCGTCGCTCGCCGGA
TCTCTTTCGCAACCTTCTGCGCACCGAGCCCTTCGACAAAGAAATCAGCG
ATTCCATATCAATCGATCTACCTCGTACCTTCCCCGACAATATTCACTTC
GATATGAAGAAGCAGCGGTTGTACAACATTCTCATCGCCTACGCCCATCA
CAATCGGGACGTGGGTTACTGCCAAGGTCTTAACTACATAGCCGGCCTCC
TGTTGATCGTCACCGACGATGAGGAGAAGTCCTTTTGGCTGCTCAAGCAT
ATCGTTGAAAACATCGTGCCGCAATACCATTCCCATAATATGGCCAATCT
GCTGAGGGATCTGGCCGTGTTCCGCGAATTGGTCATCCGGCGAATTCCCG
CTGTAAATCGGCATGTGGATAACTTGGGCCTGCCCTATCCGGTGATCGCC
AGCAAATGGTTCATCTGCATCTTTGCCGAGGTGCTGCCCGTGGAGACTGT
GCTACGTATATGGGACTGTGTCTTTGCCGAGGGCTACAAGATCGTTTTTC
GTGCCGCCCTAACCATGTTCGTCACTCACAAGAACGCCATTCTGGGCTGT
GATGATATTGCTGCCCTGGCCAATCTATTCCGGGATACCATGATCCAAG

BO09376.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5916-PA 993 CG5916-RA 1..881 17..897 4405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5916-RB 2396 CG5916-RB 534..1414 17..897 4405 100 Plus
CG5916-RA 2146 CG5916-RA 531..1411 17..897 4405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16147741..16148375 44..678 3175 100 Plus
3R 32079331 3R 16148434..16148654 677..897 1105 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:38:56 has no hits.

BO09376.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:07 Download gff for BO09376.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5916-PA 1..882 17..899 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:21 Download gff for BO09376.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5916-PA 1..882 17..899 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:26:20 Download gff for BO09376.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5916-RA 535..1425 7..899 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:54:05 Download gff for BO09376.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5916-RA 522..1412 7..899 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:54:05 Download gff for BO09376.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16147743..16148374 46..677 100 -> Plus
3R 16148435..16148655 678..899 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:26:20 Download gff for BO09376.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11973465..11974096 46..677 100 -> Plus
arm_3R 11974157..11974377 678..899 99   Plus

BO09376.complete Sequence

1024 bp (1024 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ638668

> BO09376.complete
GAAGTTATCAGTCGACATGGATGCTACCGCAAGTTCAAAGTTCAGCGATG
TGGACGAATATGGCTTCAAGCGTGGCGACCACTTCGACTATAACAACTAC
TCAAAGTTCATGGATGGTTACCTGAAAACGTTAACGCGGCGCCGCATGAA
ATGGGAGGCCATTCTGCAGCAAAATACCGATCTCACCCAGGTGGACGCCA
AGCTGAAGCGGTACATTCGGAAGGGCATTCCTGGTCCATACCGTCCCGAC
GTCTGGATGAAGATATCTGGAGCTGCCGCCGCCCAGCGTCGCTCGCCGGA
TCTCTTTCGCAACCTTCTGCGCACCGAGCCCTTCGACAAAGAAATCAGCG
ATTCCATATCAATCGATCTACCTCGTACCTTCCCCGACAATATTCACTTC
GATATGAAGAAGCAGCGGTTGTACAACATTCTCATCGCCTACGCCCATCA
CAATCGGGACGTGGGTTACTGCCAAGGTCTTAACTACATAGCCGGCCTCC
TGTTGATCGTCACCGACGATGAGGAGAAGTCCTTTTGGCTGCTCAAGCAT
ATCGTTGAAAACATCGTGCCGCAATACCATTCCCATAATATGGCCAATCT
GCTGAGGGATCTGGCCGTGTTCCGCGAATTGGTCATCCGGCGAATTCCCG
CTGTAAATCGGCATGTGGATAACTTGGGCCTGCCCTATCCGGTGATCGCC
AGCAAATGGTTCATCTGCATCTTTGCCGAGGTGCTGCCCGTGGAGACTGT
GCTACGTATATGGGACTGTGTCTTTGCCGAGGGCTACAAGATCGTTTTTC
GTGCCGCCCTAACCATGTTCGTCACTCACAAGAACGCCATTCTGGGCTGT
GATGATATTGCTGCCCTGGCCAATCTATTCCGGGATACCATGATCCAGGA
CAACATTGTGACGGACTGTCATGGCTTTGTTGAGGCCATGTTCAGTCTGC
GTTTGAAGAGAAGCGAGCTAGAGAGCCTACGCAAGGTGGCCGTGCTTAAT
CCGGCCGCAAGCTTTCTAGACCAT

BO09376.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5916-RB 993 CG5916-PB 1..990 17..1006 4950 100 Plus
CG5916-RA 993 CG5916-PA 1..990 17..1006 4950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5916-RB 2396 CG5916-RB 534..1523 17..1006 4950 100 Plus
CG5916-RA 2146 CG5916-RA 531..1520 17..1006 4950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16147741..16148375 44..678 3175 100 Plus
3R 32079331 3R 16148434..16148763 677..1006 1650 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:32:25 has no hits.

BO09376.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:33 Download gff for BO09376.complete
Subject Subject Range Query Range Percent Splice Strand
CG5916-RA 1..993 17..1010 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:05 Download gff for BO09376.complete
Subject Subject Range Query Range Percent Splice Strand
CG5916-RA 535..1537 7..1011 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:36 Download gff for BO09376.complete
Subject Subject Range Query Range Percent Splice Strand
CG5916-RA 544..1533 17..1008 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:33 Download gff for BO09376.complete
Subject Subject Range Query Range Percent Splice Strand
CG5916-RA 535..1537 7..1011 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:37 Download gff for BO09376.complete
Subject Subject Range Query Range Percent Splice Strand
CG5916-RA 531..1520 17..1008 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:37 Download gff for BO09376.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16147642..16147670 17..45 100 -> Plus
3R 16147743..16148374 46..677 100 -> Plus
3R 16148435..16148763 678..1008 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:36 Download gff for BO09376.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11973364..11973392 17..45 100 -> Plus
arm_3R 11973465..11974096 46..677 100 -> Plus
arm_3R 11974157..11974485 678..1008 99   Plus

BO09376.pep Sequence

Translation from 16 to 1024

> BO09376.pep
MDATASSKFSDVDEYGFKRGDHFDYNNYSKFMDGYLKTLTRRRMKWEAIL
QQNTDLTQVDAKLKRYIRKGIPGPYRPDVWMKISGAAAAQRRSPDLFRNL
LRTEPFDKEISDSISIDLPRTFPDNIHFDMKKQRLYNILIAYAHHNRDVG
YCQGLNYIAGLLLIVTDDEEKSFWLLKHIVENIVPQYHSHNMANLLRDLA
VFRELVIRRIPAVNRHVDNLGLPYPVIASKWFICIFAEVLPVETVLRIWD
CVFAEGYKIVFRAALTMFVTHKNAILGCDDIAALANLFRDTMIQDNIVTD
CHGFVEAMFSLRLKRSELESLRKVAVLNPAASFLDH

BO09376.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5916-PB 330 CG5916-PB 1..330 1..330 1734 100 Plus
CG5916-PA 330 CG5916-PA 1..330 1..330 1734 100 Plus
CG7324-PB 1256 CG7324-PB 459..674 67..280 329 33.9 Plus
CG7324-PA 1291 CG7324-PA 459..674 67..280 329 33.9 Plus
Evi5-PC 773 CG11727-PC 98..365 46..323 304 26.6 Plus