Clone Sequence Records
BO09377.3prime Sequence
942 bp (853 high quality bases) assembled on 2006-01-18
> BO09377.3prime
ATGGTCTAGAAAGCTTGCGTTACACACTTTGGGCGCAGCATTCTCGCCCA
CCTCGGCGGAACTGTTGACGATCTTGGGCTCACCATTTACATTAATTTCG
GCCTTCTTGACCTCGCAGATTTCCTGTGGTTCCTTTGCAGGACTGTCGGC
AGTCTTAACCAAGGTTGTATCGATTTCCAAGGGCTTGCTGACATCATTGG
ATGCGGGGGCGGTAGAAACATCAATAGGAACGGGCGTGGCGCTCTCATCC
GTATTGCTCTCTGCCTCCTTGGGTTCCGCAGAGTCCACAACCTTGCTAGG
CTCCTCTTCGCTGCTGGCGGCTTCCTTCGGCTCAGTCACCACCACGGTGC
TGGTTTCCGTAAGCTCTTCCGCGGACTCTACAGTGCTTTCGGCTTCCTTG
GGCTCGGCAGCGGGCACTTCTAAAACTGTTTCTTTGCCCTCTGTGGCCAC
TTCCACCACATCATTGCTAGACTCCGTAGTCTTTGCTGCTGCTTCTGTTT
CTGGAGCGGCAGAAACGTTTTCGATGGCTGGTGTGTCTACTTGAGCGGTG
TCCGAACTGCCCTTCGAACTTCCGTCCACTTCCATAGGTTCTGGTGTGGG
CTCCTTGGCTGGCTCATTTTGCTCCTTGGACTCCAAAACTGCTGCTGCAT
GTTCCTCTGACTTCTGTTCTGGTTCTTTTTCGTCATCTAATGCCTTTTCT
TTATTTGCGGATGGTGTGTTTTCGACGAGCGTCTCATCTTCGTCCACATC
CATAACAGAAGCAGGTTCTTTAGGTGCAGCGGCAGTCTCTGTAGCGGCTC
CATTCTCCGACGTTTCTCCGCTCGACTTGAGGGGCTCTTCAGCTTTTGGC
ACCTCTTCGCTTGAATTCCCAGGTTCTTCTGATATTGGTTTGACTTCATC
GACATGATTCTGCTTCGCTTCCGCACTGAAGGAAGATTCTCC
BO09377.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1910-PB | 1320 | CG1910-RB | 412..1317 | 924..19 | 4530 | 100 | Minus |
CG1910-PA | 1470 | CG1910-RA | 562..1467 | 924..19 | 4530 | 100 | Minus |
CG1910-PD | 1320 | CG1910-RD | 412..1317 | 924..19 | 4530 | 100 | Minus |
CG1910-PC | 1401 | CG1910-RC | 493..1398 | 924..19 | 4530 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:05:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1910-RC | 2628 | CG1910-RC | 519..1443 | 942..19 | 4600 | 99.9 | Minus |
CG1910-RD | 2698 | CG1910-RD | 589..1513 | 942..19 | 4600 | 99.9 | Minus |
CG1910-RA | 3015 | CG1910-RA | 906..1830 | 942..19 | 4600 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:05:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31749727..31750592 | 942..78 | 4265 | 99.8 | Minus |
3R | 32079331 | 3R | 31750644..31750709 | 84..19 | 330 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 23:05:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 2110..2139 | 603..574 | 114 | 86.7 | Minus |
BO09377.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:08 Download gff for
BO09377.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-PC | 474..1401 | 15..942 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:22 Download gff for
BO09377.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-PC | 474..1401 | 15..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:32:03 Download gff for
BO09377.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RA | 906..1833 | 15..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:34:59 Download gff for
BO09377.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RA | 906..1833 | 15..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:34:59 Download gff for
BO09377.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31749727..31750586 | 84..942 | 99 | -> | Minus |
3R | 31750645..31750712 | 15..83 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:32:03 Download gff for
BO09377.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27575449..27576308 | 84..942 | 99 | -> | Minus |
arm_3R | 27576367..27576434 | 15..83 | 97 | | Minus |
BO09377.5prime Sequence
887 bp (758 high quality bases) assembled on 2006-01-18
> BO09377.5prime
GAAGTTATCAGTCGACATGTCGGAGGCAACTGTGGCCCAAAAGCCGGAGG
CGGTGGAAGATGTGAATGCGTCGACGGGGGACGAGAAGCAGACTCCCAAA
CGCACTCCCAAACGCCGCTCGTTCATTGAGCGGGCGCAGAAGGAAAGCGA
GGAGCTTGTGCGAACAATGGGCGGAAGCCTGGAGCTGGCGGGCGGGCGGC
GGACGCGGTCTAGCACTCGAGGAACGCCGACGCGAGCCGCCGAGGCAGTG
ACGCCGCCACCCAGCAAAAAGGCGCGCACTTCGCCGGCCTCGGCCACAAA
GGCCAGTGCAGGAAAGGGACGCGGAGCACGTAAGCTAGACGTAGGCGCTG
ATGAGCCCGAGCCTGAGCTGGAGAAGGAGAAGGAGAAGGTACAGACCTCG
GTCAAGGGAAAGGGAGCTGTCAAGAAGGACAAGAAAGAGGTCAAGAAGCA
GGAGAAGGCAACTGAGAAATATGCGCCGGAGGAGGCAAAGGAAGATGTAG
CTGAGGCAAAAGAGGAAGACGCCAGTCCCGCCGGGGTCCAGGACCAACCG
GATGGTGTGGAGAATCTTCCTTCAGTGGCGGAAGCGAAGCAGAATCATGT
CGATGAAGTCAAACCAATATCAGAAGAACCTGGGAATTCAAGCGAAGAGG
TGCCAAAAGCTGAAGAGCCCCTCAAGTCGAGCGGAGAAACGTCGGAGAAT
GGAGCCGCTACAGAGACTGCCGCTGCACCTAAAGAACCTGCTTCTGTTAT
GGATGTGGACGAAGATGAGACGCTCGTCGAAAACACACCATCCGCAAATA
AAGAANAGGCATTAGATGACGAAAAAGAACCAGAACAGAAGTCAGAGGAA
CATGCAGCAGCAGTTTTGGAGTCCAAGGAGCAAAATG
BO09377.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1910-PA | 1470 | CG1910-RA | 1..871 | 17..887 | 4336 | 99.8 | Plus |
CG1910-PC | 1401 | CG1910-RC | 13..802 | 98..887 | 3931 | 99.8 | Plus |
CG1910-PB | 1320 | CG1910-RB | 1..721 | 167..887 | 3586 | 99.8 | Plus |
CG1910-PD | 1320 | CG1910-RD | 1..721 | 167..887 | 3586 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:26:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1910-RA | 3015 | CG1910-RA | 364..1234 | 17..887 | 4344 | 99.9 | Plus |
CG1910-RD | 2698 | CG1910-RD | 127..917 | 97..887 | 3944 | 99.9 | Plus |
CG1910-RC | 2628 | CG1910-RC | 58..847 | 98..887 | 3939 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:26:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31749578..31750055 | 410..887 | 2379 | 99.8 | Plus |
3R | 32079331 | 3R | 31749207..31749522 | 98..413 | 1580 | 100 | Plus |
3R | 32079331 | 3R | 31748006..31748086 | 17..97 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:26:29 has no hits.
BO09377.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:09 Download gff for
BO09377.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-PA | 1..871 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:23 Download gff for
BO09377.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-PA | 1..871 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:09:01 Download gff for
BO09377.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RA | 364..1234 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:34 Download gff for
BO09377.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RA | 364..1234 | 17..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:34 Download gff for
BO09377.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31748006..31748086 | 17..97 | 100 | -> | Plus |
3R | 31749207..31749521 | 98..412 | 100 | -> | Plus |
3R | 31749581..31750055 | 413..887 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:09:01 Download gff for
BO09377.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27573728..27573808 | 17..97 | 100 | -> | Plus |
arm_3R | 27574929..27575243 | 98..412 | 100 | -> | Plus |
arm_3R | 27575303..27575777 | 413..887 | 99 | | Plus |
BO09377.complete Sequence
1501 bp (1501 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631488
> BO09377.complete
GAAGTTATCAGTCGACATGTCGGAGGCAACTGTGGCCCAAAAGCCGGAGG
CGGTGGAAGATGTGAATGCGTCGACGGGGGACGAGAAGCAGACTCCCAAA
CGCACTCCCAAACGCCGCTCGTTCATTGAGCGGGCGCAGAAGGAAAGCGA
GGAGCTTGTGCGAACAATGGGCGGAAGCCTGGAGCTGGCGGGCGGGCGGC
GGACGCGGTCTAGCACTCGAGGAACGCCGACGCGAGCCGCCGAGGCAGTG
ACGCCGCCACCCAGCAAAAAGGCGCGCACTTCGCCGGCCTCGGCCACAAA
GGCCAGTGCAGGAAAGGGACGCGGAGCACGTAAGCTAGACGTAGGCGCTG
ATGAGCCCGAGCCTGAGCTGGAGAAGGAGAAGGAGAAGGTACAGACCTCG
GTCAAGGGAAAGGGAGCTGTCAAGAAGGACAAGAAAGAGGTCAAGAAGCA
GGAGAAGGCAACTGAGAAATATGCGCCGGAGGAGGCAAAGGAAGATGTAG
CTGAGGCAAAAGAGGAAGACGCCAGTCCCGCCGGGGTCCAGGACCAACCG
GATGGTGTGGAGAATCTTCCTTCAGTGGCGGAAGCGAAGCAGAATCATGT
CGATGAAGTCAAACCAATATCAGAAGAACCTGGGAATTCAAGCGAAGAGG
TGCCAAAAGCTGAAGAGCCCCTCAAGTCGAGCGGAGAAACGTCGGAGAAT
GGAGCCGCTACAGAGACTGCCGCTGCACCTAAAGAACCTGCTTCTGTTAT
GGATGTGGACGAAGATGAGACGCTCGTCGAAAACACACCATCCGCAAATA
AAGAAAAGGCATTAGATGACGAAAAAGAACCAGAACAGAAGTCAGAGGAA
CATGCAGCAGCAGTTTTGGAGTCCAAGGAGCAAAATGAGCCAGCCAAGGA
GCCCACACCAGAACCTATGGAAGTGGACGGAAGTTCGAAGGGCAGTTCGG
ACACCGCTCAAGTAGACACACCAGCCATCGAAAACGTTTCTGCCGCTCCA
GAAACAGAAGCAGCAGCAAAGACTACGGAGTCTAGCAATGATGTGGTGGA
AGTGGCCACAGAGGGCAAAGAAACAGTTTTAGAAGTGCCCGCTGCCGAGC
CCAAGGAAGCCGAAAGCACTGTAGAGTCCGCGGAAGAGCTTACGGAAACC
AGCACCGTGGTGGTGACTGAGCCGAAGGAAGCCGCCAGCAGCGAAGAGGA
GCCTAGCAAGGTTGTGGACTCTGCGGAACCCAAGGAGGCAGAGAGCAATA
CGGATGAGAGCGCCACGCCCGTTCCTATTGATGTTTCTACCGCCCCCGCA
TCCAATGATGTCAGCAAGCCCTTGGAAATCGATACAACCTTGGTTAAGAC
TGCCGACAGTCCTGCAAAGGAACCACAGGAAATCTGCGAGGTCAAGAAGG
CCGAAATTAATGTAAATGGTGAGCCCAAGATCGTCAACAGTTCCGCCGAG
GTGGGCGAGAATGCTGCGCCCAAAGTGTGTAACGCAAGCTTTCTAGACCA
T
BO09377.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:39:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1910-RA | 1470 | CG1910-PA | 1..1467 | 17..1483 | 7335 | 100 | Plus |
CG1910-RC | 1401 | CG1910-PC | 13..1398 | 98..1483 | 6930 | 100 | Plus |
CG1910-RD | 1320 | CG1910-PD | 1..1317 | 167..1483 | 6585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:39:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1910-RA | 3015 | CG1910-RA | 364..1830 | 17..1483 | 7335 | 100 | Plus |
CG1910-RD | 2698 | CG1910-RD | 127..1513 | 97..1483 | 6935 | 100 | Plus |
CG1910-RC | 2628 | CG1910-RC | 58..1443 | 98..1483 | 6930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:39:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31749578..31750592 | 410..1424 | 5060 | 99.9 | Plus |
3R | 32079331 | 3R | 31749207..31749522 | 98..413 | 1580 | 100 | Plus |
3R | 32079331 | 3R | 31748006..31748086 | 17..97 | 405 | 100 | Plus |
3R | 32079331 | 3R | 31750644..31750709 | 1418..1483 | 330 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 19:39:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 2110..2139 | 899..928 | 114 | 86.7 | Plus |
BO09377.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:34 Download gff for
BO09377.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RA | 1..1470 | 17..1487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:07 Download gff for
BO09377.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RA | 362..1831 | 17..1487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:46 Download gff for
BO09377.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RA | 364..1830 | 17..1485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:34 Download gff for
BO09377.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RA | 362..1831 | 17..1487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:45 Download gff for
BO09377.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RA | 364..1830 | 17..1485 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:45 Download gff for
BO09377.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31748006..31748086 | 17..97 | 100 | -> | Plus |
3R | 31749207..31749521 | 98..412 | 100 | -> | Plus |
3R | 31749581..31750586 | 413..1418 | 100 | -> | Plus |
3R | 31750645..31750709 | 1419..1485 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:46 Download gff for
BO09377.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27573728..27573808 | 17..97 | 100 | -> | Plus |
arm_3R | 27574929..27575243 | 98..412 | 100 | -> | Plus |
arm_3R | 27576367..27576431 | 1419..1485 | 97 | | Plus |
arm_3R | 27575303..27576308 | 413..1418 | 100 | -> | Plus |
BO09377.pep Sequence
Translation from 16 to 1501
> BO09377.pep
MSEATVAQKPEAVEDVNASTGDEKQTPKRTPKRRSFIERAQKESEELVRT
MGGSLELAGGRRTRSSTRGTPTRAAEAVTPPPSKKARTSPASATKASAGK
GRGARKLDVGADEPEPELEKEKEKVQTSVKGKGAVKKDKKEVKKQEKATE
KYAPEEAKEDVAEAKEEDASPAGVQDQPDGVENLPSVAEAKQNHVDEVKP
ISEEPGNSSEEVPKAEEPLKSSGETSENGAATETAAAPKEPASVMDVDED
ETLVENTPSANKEKALDDEKEPEQKSEEHAAAVLESKEQNEPAKEPTPEP
MEVDGSSKGSSDTAQVDTPAIENVSAAPETEAAAKTTESSNDVVEVATEG
KETVLEVPAAEPKEAESTVESAEELTETSTVVVTEPKEAASSEEEPSKVV
DSAEPKEAESNTDESATPVPIDVSTAPASNDVSKPLEIDTTLVKTADSPA
KEPQEICEVKKAEINVNGEPKIVNSSAEVGENAAPKVCNASFLDH
BO09377.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1910-PA | 489 | CG1910-PA | 1..489 | 1..489 | 2432 | 100 | Plus |
CG1910-PC | 466 | CG1910-PC | 5..466 | 28..489 | 2298 | 100 | Plus |
CG1910-PD | 439 | CG1910-PD | 1..439 | 51..489 | 2186 | 100 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4750..5217 | 7..458 | 215 | 23 | Plus |
Strn-Mlck-PV | 7944 | CG44162-PV | 4789..5256 | 7..458 | 215 | 23 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 3905..4325 | 7..463 | 199 | 22.9 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4274..4715 | 1..463 | 186 | 21.7 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4664..5143 | 1..463 | 186 | 20.7 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4100..4585 | 7..463 | 183 | 22.7 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 3775..4268 | 7..464 | 179 | 23.2 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4490..4975 | 7..463 | 178 | 23.4 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 3453..3935 | 14..463 | 177 | 22 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4880..5262 | 7..397 | 174 | 24.1 | Plus |