Clone BO09377 Report

Search the DGRC for BO09377

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:93
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG1910-RA
Protein status:BO09377.pep: validated full length
Sequenced Size:1501

Clone Sequence Records

BO09377.3prime Sequence

942 bp (853 high quality bases) assembled on 2006-01-18

> BO09377.3prime
ATGGTCTAGAAAGCTTGCGTTACACACTTTGGGCGCAGCATTCTCGCCCA
CCTCGGCGGAACTGTTGACGATCTTGGGCTCACCATTTACATTAATTTCG
GCCTTCTTGACCTCGCAGATTTCCTGTGGTTCCTTTGCAGGACTGTCGGC
AGTCTTAACCAAGGTTGTATCGATTTCCAAGGGCTTGCTGACATCATTGG
ATGCGGGGGCGGTAGAAACATCAATAGGAACGGGCGTGGCGCTCTCATCC
GTATTGCTCTCTGCCTCCTTGGGTTCCGCAGAGTCCACAACCTTGCTAGG
CTCCTCTTCGCTGCTGGCGGCTTCCTTCGGCTCAGTCACCACCACGGTGC
TGGTTTCCGTAAGCTCTTCCGCGGACTCTACAGTGCTTTCGGCTTCCTTG
GGCTCGGCAGCGGGCACTTCTAAAACTGTTTCTTTGCCCTCTGTGGCCAC
TTCCACCACATCATTGCTAGACTCCGTAGTCTTTGCTGCTGCTTCTGTTT
CTGGAGCGGCAGAAACGTTTTCGATGGCTGGTGTGTCTACTTGAGCGGTG
TCCGAACTGCCCTTCGAACTTCCGTCCACTTCCATAGGTTCTGGTGTGGG
CTCCTTGGCTGGCTCATTTTGCTCCTTGGACTCCAAAACTGCTGCTGCAT
GTTCCTCTGACTTCTGTTCTGGTTCTTTTTCGTCATCTAATGCCTTTTCT
TTATTTGCGGATGGTGTGTTTTCGACGAGCGTCTCATCTTCGTCCACATC
CATAACAGAAGCAGGTTCTTTAGGTGCAGCGGCAGTCTCTGTAGCGGCTC
CATTCTCCGACGTTTCTCCGCTCGACTTGAGGGGCTCTTCAGCTTTTGGC
ACCTCTTCGCTTGAATTCCCAGGTTCTTCTGATATTGGTTTGACTTCATC
GACATGATTCTGCTTCGCTTCCGCACTGAAGGAAGATTCTCC

BO09377.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-PB 1320 CG1910-RB 412..1317 924..19 4530 100 Minus
CG1910-PA 1470 CG1910-RA 562..1467 924..19 4530 100 Minus
CG1910-PD 1320 CG1910-RD 412..1317 924..19 4530 100 Minus
CG1910-PC 1401 CG1910-RC 493..1398 924..19 4530 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-RC 2628 CG1910-RC 519..1443 942..19 4600 99.9 Minus
CG1910-RD 2698 CG1910-RD 589..1513 942..19 4600 99.9 Minus
CG1910-RA 3015 CG1910-RA 906..1830 942..19 4600 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31749727..31750592 942..78 4265 99.8 Minus
3R 32079331 3R 31750644..31750709 84..19 330 100 Minus
Blast to na_te.dros performed 2015-02-11 23:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy3 6973 gypsy3 GYPSY3 6973bp 2110..2139 603..574 114 86.7 Minus

BO09377.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:08 Download gff for BO09377.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-PC 474..1401 15..942 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:22 Download gff for BO09377.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-PC 474..1401 15..942 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:32:03 Download gff for BO09377.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 906..1833 15..942 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:34:59 Download gff for BO09377.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 906..1833 15..942 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:34:59 Download gff for BO09377.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31749727..31750586 84..942 99 -> Minus
3R 31750645..31750712 15..83 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:32:03 Download gff for BO09377.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27575449..27576308 84..942 99 -> Minus
arm_3R 27576367..27576434 15..83 97   Minus

BO09377.5prime Sequence

887 bp (758 high quality bases) assembled on 2006-01-18

> BO09377.5prime
GAAGTTATCAGTCGACATGTCGGAGGCAACTGTGGCCCAAAAGCCGGAGG
CGGTGGAAGATGTGAATGCGTCGACGGGGGACGAGAAGCAGACTCCCAAA
CGCACTCCCAAACGCCGCTCGTTCATTGAGCGGGCGCAGAAGGAAAGCGA
GGAGCTTGTGCGAACAATGGGCGGAAGCCTGGAGCTGGCGGGCGGGCGGC
GGACGCGGTCTAGCACTCGAGGAACGCCGACGCGAGCCGCCGAGGCAGTG
ACGCCGCCACCCAGCAAAAAGGCGCGCACTTCGCCGGCCTCGGCCACAAA
GGCCAGTGCAGGAAAGGGACGCGGAGCACGTAAGCTAGACGTAGGCGCTG
ATGAGCCCGAGCCTGAGCTGGAGAAGGAGAAGGAGAAGGTACAGACCTCG
GTCAAGGGAAAGGGAGCTGTCAAGAAGGACAAGAAAGAGGTCAAGAAGCA
GGAGAAGGCAACTGAGAAATATGCGCCGGAGGAGGCAAAGGAAGATGTAG
CTGAGGCAAAAGAGGAAGACGCCAGTCCCGCCGGGGTCCAGGACCAACCG
GATGGTGTGGAGAATCTTCCTTCAGTGGCGGAAGCGAAGCAGAATCATGT
CGATGAAGTCAAACCAATATCAGAAGAACCTGGGAATTCAAGCGAAGAGG
TGCCAAAAGCTGAAGAGCCCCTCAAGTCGAGCGGAGAAACGTCGGAGAAT
GGAGCCGCTACAGAGACTGCCGCTGCACCTAAAGAACCTGCTTCTGTTAT
GGATGTGGACGAAGATGAGACGCTCGTCGAAAACACACCATCCGCAAATA
AAGAANAGGCATTAGATGACGAAAAAGAACCAGAACAGAAGTCAGAGGAA
CATGCAGCAGCAGTTTTGGAGTCCAAGGAGCAAAATG

BO09377.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:40:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-PA 1470 CG1910-RA 1..871 17..887 4336 99.8 Plus
CG1910-PC 1401 CG1910-RC 13..802 98..887 3931 99.8 Plus
CG1910-PB 1320 CG1910-RB 1..721 167..887 3586 99.8 Plus
CG1910-PD 1320 CG1910-RD 1..721 167..887 3586 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-RA 3015 CG1910-RA 364..1234 17..887 4344 99.9 Plus
CG1910-RD 2698 CG1910-RD 127..917 97..887 3944 99.9 Plus
CG1910-RC 2628 CG1910-RC 58..847 98..887 3939 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31749578..31750055 410..887 2379 99.8 Plus
3R 32079331 3R 31749207..31749522 98..413 1580 100 Plus
3R 32079331 3R 31748006..31748086 17..97 405 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:26:29 has no hits.

BO09377.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:09 Download gff for BO09377.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-PA 1..871 17..887 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:23 Download gff for BO09377.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-PA 1..871 17..887 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:09:01 Download gff for BO09377.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 364..1234 17..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:34 Download gff for BO09377.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 364..1234 17..887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:34 Download gff for BO09377.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31748006..31748086 17..97 100 -> Plus
3R 31749207..31749521 98..412 100 -> Plus
3R 31749581..31750055 413..887 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:09:01 Download gff for BO09377.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27573728..27573808 17..97 100 -> Plus
arm_3R 27574929..27575243 98..412 100 -> Plus
arm_3R 27575303..27575777 413..887 99   Plus

BO09377.complete Sequence

1501 bp (1501 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631488

> BO09377.complete
GAAGTTATCAGTCGACATGTCGGAGGCAACTGTGGCCCAAAAGCCGGAGG
CGGTGGAAGATGTGAATGCGTCGACGGGGGACGAGAAGCAGACTCCCAAA
CGCACTCCCAAACGCCGCTCGTTCATTGAGCGGGCGCAGAAGGAAAGCGA
GGAGCTTGTGCGAACAATGGGCGGAAGCCTGGAGCTGGCGGGCGGGCGGC
GGACGCGGTCTAGCACTCGAGGAACGCCGACGCGAGCCGCCGAGGCAGTG
ACGCCGCCACCCAGCAAAAAGGCGCGCACTTCGCCGGCCTCGGCCACAAA
GGCCAGTGCAGGAAAGGGACGCGGAGCACGTAAGCTAGACGTAGGCGCTG
ATGAGCCCGAGCCTGAGCTGGAGAAGGAGAAGGAGAAGGTACAGACCTCG
GTCAAGGGAAAGGGAGCTGTCAAGAAGGACAAGAAAGAGGTCAAGAAGCA
GGAGAAGGCAACTGAGAAATATGCGCCGGAGGAGGCAAAGGAAGATGTAG
CTGAGGCAAAAGAGGAAGACGCCAGTCCCGCCGGGGTCCAGGACCAACCG
GATGGTGTGGAGAATCTTCCTTCAGTGGCGGAAGCGAAGCAGAATCATGT
CGATGAAGTCAAACCAATATCAGAAGAACCTGGGAATTCAAGCGAAGAGG
TGCCAAAAGCTGAAGAGCCCCTCAAGTCGAGCGGAGAAACGTCGGAGAAT
GGAGCCGCTACAGAGACTGCCGCTGCACCTAAAGAACCTGCTTCTGTTAT
GGATGTGGACGAAGATGAGACGCTCGTCGAAAACACACCATCCGCAAATA
AAGAAAAGGCATTAGATGACGAAAAAGAACCAGAACAGAAGTCAGAGGAA
CATGCAGCAGCAGTTTTGGAGTCCAAGGAGCAAAATGAGCCAGCCAAGGA
GCCCACACCAGAACCTATGGAAGTGGACGGAAGTTCGAAGGGCAGTTCGG
ACACCGCTCAAGTAGACACACCAGCCATCGAAAACGTTTCTGCCGCTCCA
GAAACAGAAGCAGCAGCAAAGACTACGGAGTCTAGCAATGATGTGGTGGA
AGTGGCCACAGAGGGCAAAGAAACAGTTTTAGAAGTGCCCGCTGCCGAGC
CCAAGGAAGCCGAAAGCACTGTAGAGTCCGCGGAAGAGCTTACGGAAACC
AGCACCGTGGTGGTGACTGAGCCGAAGGAAGCCGCCAGCAGCGAAGAGGA
GCCTAGCAAGGTTGTGGACTCTGCGGAACCCAAGGAGGCAGAGAGCAATA
CGGATGAGAGCGCCACGCCCGTTCCTATTGATGTTTCTACCGCCCCCGCA
TCCAATGATGTCAGCAAGCCCTTGGAAATCGATACAACCTTGGTTAAGAC
TGCCGACAGTCCTGCAAAGGAACCACAGGAAATCTGCGAGGTCAAGAAGG
CCGAAATTAATGTAAATGGTGAGCCCAAGATCGTCAACAGTTCCGCCGAG
GTGGGCGAGAATGCTGCGCCCAAAGTGTGTAACGCAAGCTTTCTAGACCA
T

BO09377.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-RA 1470 CG1910-PA 1..1467 17..1483 7335 100 Plus
CG1910-RC 1401 CG1910-PC 13..1398 98..1483 6930 100 Plus
CG1910-RD 1320 CG1910-PD 1..1317 167..1483 6585 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-RA 3015 CG1910-RA 364..1830 17..1483 7335 100 Plus
CG1910-RD 2698 CG1910-RD 127..1513 97..1483 6935 100 Plus
CG1910-RC 2628 CG1910-RC 58..1443 98..1483 6930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31749578..31750592 410..1424 5060 99.9 Plus
3R 32079331 3R 31749207..31749522 98..413 1580 100 Plus
3R 32079331 3R 31748006..31748086 17..97 405 100 Plus
3R 32079331 3R 31750644..31750709 1418..1483 330 100 Plus
Blast to na_te.dros performed 2014-11-27 19:39:33
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy3 6973 gypsy3 GYPSY3 6973bp 2110..2139 899..928 114 86.7 Plus

BO09377.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:34 Download gff for BO09377.complete
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 1..1470 17..1487 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:07 Download gff for BO09377.complete
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 362..1831 17..1487 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:46 Download gff for BO09377.complete
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 364..1830 17..1485 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:34 Download gff for BO09377.complete
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 362..1831 17..1487 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:45 Download gff for BO09377.complete
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 364..1830 17..1485 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:45 Download gff for BO09377.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31748006..31748086 17..97 100 -> Plus
3R 31749207..31749521 98..412 100 -> Plus
3R 31749581..31750586 413..1418 100 -> Plus
3R 31750645..31750709 1419..1485 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:46 Download gff for BO09377.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27573728..27573808 17..97 100 -> Plus
arm_3R 27574929..27575243 98..412 100 -> Plus
arm_3R 27576367..27576431 1419..1485 97   Plus
arm_3R 27575303..27576308 413..1418 100 -> Plus

BO09377.pep Sequence

Translation from 16 to 1501

> BO09377.pep
MSEATVAQKPEAVEDVNASTGDEKQTPKRTPKRRSFIERAQKESEELVRT
MGGSLELAGGRRTRSSTRGTPTRAAEAVTPPPSKKARTSPASATKASAGK
GRGARKLDVGADEPEPELEKEKEKVQTSVKGKGAVKKDKKEVKKQEKATE
KYAPEEAKEDVAEAKEEDASPAGVQDQPDGVENLPSVAEAKQNHVDEVKP
ISEEPGNSSEEVPKAEEPLKSSGETSENGAATETAAAPKEPASVMDVDED
ETLVENTPSANKEKALDDEKEPEQKSEEHAAAVLESKEQNEPAKEPTPEP
MEVDGSSKGSSDTAQVDTPAIENVSAAPETEAAAKTTESSNDVVEVATEG
KETVLEVPAAEPKEAESTVESAEELTETSTVVVTEPKEAASSEEEPSKVV
DSAEPKEAESNTDESATPVPIDVSTAPASNDVSKPLEIDTTLVKTADSPA
KEPQEICEVKKAEINVNGEPKIVNSSAEVGENAAPKVCNASFLDH

BO09377.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-PA 489 CG1910-PA 1..489 1..489 2432 100 Plus
CG1910-PC 466 CG1910-PC 5..466 28..489 2298 100 Plus
CG1910-PD 439 CG1910-PD 1..439 51..489 2186 100 Plus
Strn-Mlck-PT 7905 CG44162-PT 4750..5217 7..458 215 23 Plus
Strn-Mlck-PV 7944 CG44162-PV 4789..5256 7..458 215 23 Plus
Strn-Mlck-PT 7905 CG44162-PT 3905..4325 7..463 199 22.9 Plus
Strn-Mlck-PT 7905 CG44162-PT 4274..4715 1..463 186 21.7 Plus
Strn-Mlck-PT 7905 CG44162-PT 4664..5143 1..463 186 20.7 Plus
Strn-Mlck-PT 7905 CG44162-PT 4100..4585 7..463 183 22.7 Plus
Strn-Mlck-PT 7905 CG44162-PT 3775..4268 7..464 179 23.2 Plus
Strn-Mlck-PT 7905 CG44162-PT 4490..4975 7..463 178 23.4 Plus
Strn-Mlck-PT 7905 CG44162-PT 3453..3935 14..463 177 22 Plus
Strn-Mlck-PT 7905 CG44162-PT 4880..5262 7..397 174 24.1 Plus