Clone Sequence Records
BO09378.3prime Sequence
665 bp (664 high quality bases) assembled on 2006-01-18
> BO09378.3prime
ATGGTCTAGAAAGCTTGCCAGAACCCAGAAATACATGATGAACACTAGAA
GTATCATGCCCAAGGCCATCGCCTTCACGTACATGGACTTTCGGTTGAGC
AGCTTGGCGTCCTTCTTGTACTTCTGTGACATCATCGATAGGTTCTGGGT
CTTGGTGTCGAGTTCCGCCAGCACTGTGCCACGTTGGAGCACGTCGTCAA
TGTTTTGCACCATGATGCGCTGCACATCCTGCAGCTGTGTGTTGATGTTG
CTGATGTTGCGTCTGCGGTCCGTCAACTGTTTTTTCGCCTTCTGTATGTA
CACGTCAAACTCGATGAATGCGTATGGGCGAGTCACTGAGTTTACTCGCC
GGCCGTAGTTAGCATGGAACTCCTGGGCCAGGTCCTCCAGGTAATTGAAG
GCCAGTCGCTTTGAGTACATCTTGTCCACCATCACCAGGTAGCAGACGTC
GTTCTCGATTAGGTAGTGGAATAGGTAGGGTCCGGTCTCGATACTGCATC
GAGCCGGGGAGTGGGTACCCAGCTTGCGGAAGAGCATCTTAGCCTGGTTT
TGGTAGTCCAGTATGCTGCGTCCGCTCTGCTCGTCATCCTGCATGGTCCC
CACCAGAGGAAGGCCATCGATGACCCTGGCTATCATGGTCAGCAGCGCCA
TGTCGACTGATAACT
BO09378.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7359-PA | 636 | CG7359-RA | 1..633 | 651..19 | 3165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:33:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec22-RA | 1743 | CG7359-RA | 409..1042 | 652..19 | 3170 | 100 | Minus |
Sec22-RB | 1749 | CG7359-RB | 409..1048 | 652..19 | 3100 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:33:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 806969..807270 | 466..165 | 1510 | 100 | Minus |
X | 23542271 | X | 807353..807499 | 165..19 | 735 | 100 | Minus |
X | 23542271 | X | 806630..806742 | 579..467 | 565 | 100 | Minus |
X | 23542271 | X | 806484..806559 | 652..577 | 380 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 22:33:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2618..2665 | 286..240 | 111 | 72.9 | Minus |
BO09378.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:10 Download gff for
BO09378.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7359-PA | 1..636 | 15..651 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:25 Download gff for
BO09378.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7359-PA | 1..636 | 15..651 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:25:27 Download gff for
BO09378.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec22-RA | 402..1045 | 15..659 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:31 Download gff for
BO09378.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec22-RA | 402..1045 | 15..659 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:31 Download gff for
BO09378.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 806477..806559 | 577..659 | 96 | -> | Minus |
X | 806633..806742 | 467..576 | 100 | -> | Minus |
X | 806969..807270 | 165..466 | 100 | -> | Minus |
X | 807354..807502 | 15..164 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:25:27 Download gff for
BO09378.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 700510..700592 | 577..659 | 96 | -> | Minus |
arm_X | 700666..700775 | 467..576 | 100 | -> | Minus |
arm_X | 701002..701303 | 165..466 | 100 | -> | Minus |
arm_X | 701387..701535 | 15..164 | 98 | | Minus |
BO09378.5prime Sequence
665 bp (664 high quality bases) assembled on 2006-01-18
> BO09378.5prime
GAAGTTATCAGTCGACATGGCGCTGCTGACCATGATAGCCAGGGTCATCG
ATGGCCTTCCTCTGGTGGGGACCATGCAGGATGACGAGCAGAGCGGACGC
AGCATACTGGACTACCAAAACCAGGCTAAGATGCTCTTCCGCAAGCTGGG
TACCCACTCCCCGGCTCGATGCAGTATCGAGACCGGACCCTACCTATTCC
ACTACCTAATCGAGAACGACGTCTGCTACCTGGTGATGGTGGACAAGATG
TACTCAAAGCGACTGGCCTTCAATTACCTGGAGGACCTGGCCCAGGAGTT
CCATGCTAACTACGGCCGGCGAGTAAACTCAGTGACTCGCCCATACGCAT
TCATCGAGTTTGACGTGTACATACAGAAGGCGAAAAAACAGTTGACGGAC
CGCAGACGCAACATCAGCAACATCAACACACAGCTGCAGGATGTGCAGCG
CATCATGGTGCAAAACATTGACGACGTGCTCCAACGTGGCACAGTGCTGG
CGGAACTCGACACCAAGACCCAGAACCTATCGATGATGTCACAGAAGTAC
AAGAAGGACGCCAAGCTGCTCAACCGAAAGTCCATGTACGTGAAGGCGAT
GGCCTTGGGCATGATACTTCTAGTGTTCATCATGTATTTCTGGGTTCTGG
CAAGCTTTCTAGACC
BO09378.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7359-PA | 636 | CG7359-RA | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec22-RA | 1743 | CG7359-RA | 409..1042 | 16..649 | 3170 | 100 | Plus |
Sec22-RB | 1749 | CG7359-RB | 409..1048 | 16..649 | 3100 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 806969..807270 | 202..503 | 1510 | 100 | Plus |
X | 23542271 | X | 807353..807499 | 503..649 | 735 | 100 | Plus |
X | 23542271 | X | 806630..806742 | 89..201 | 565 | 100 | Plus |
X | 23542271 | X | 806484..806559 | 16..91 | 380 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 21:23:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2618..2665 | 382..428 | 111 | 72.9 | Plus |
BO09378.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:10 Download gff for
BO09378.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7359-PA | 1..636 | 17..653 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:27 Download gff for
BO09378.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7359-PA | 1..636 | 17..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:24:22 Download gff for
BO09378.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec22-RA | 402..1045 | 9..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:02 Download gff for
BO09378.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec22-RA | 402..1045 | 9..653 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:02 Download gff for
BO09378.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 806477..806559 | 9..91 | 96 | -> | Plus |
X | 806633..806742 | 92..201 | 100 | -> | Plus |
X | 806969..807270 | 202..503 | 100 | -> | Plus |
X | 807354..807502 | 504..653 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:24:22 Download gff for
BO09378.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 700510..700592 | 9..91 | 96 | -> | Plus |
arm_X | 700666..700775 | 92..201 | 100 | -> | Plus |
arm_X | 701002..701303 | 202..503 | 100 | -> | Plus |
arm_X | 701387..701535 | 504..653 | 98 | | Plus |
BO09378.complete Sequence
667 bp assembled on 2007-10-17
GenBank Submission: FJ631489
> BO09378.complete
GAAGTTATCAGTCGACATGGCGCTGCTGACCATGATAGCCAGGGTCATCG
ATGGCCTTCCTCTGGTGGGGACCATGCAGGATGACGAGCAGAGCGGACGC
AGCATACTGGACTACCAAAACCAGGCTAAGATGCTCTTCCGCAAGCTGGG
TACCCACTCCCCGGCTCGATGCAGTATCGAGACCGGACCCTACCTATTCC
ACTACCTAATCGAGAACGACGTCTGCTACCTGGTGATGGTGGACAAGATG
TACTCAAAGCGACTGGCCTTCAATTACCTGGAGGACCTGGCCCAGGAGTT
CCATGCTAACTACGGCCGGCGAGTAAACTCAGTGACTCGCCCATACGCAT
TCATCGAGTTTGACGTGTACATACAGAAGGCGAAAAAACAGTTGACGGAC
CGCAGACGCAACATCAGCAACATCAACACACAGCTGCAGGATGTGCAGCG
CATCATGGTGCAAAACATTGACGACGTGCTCCAACGTGGCACAGTGCTGG
CGGAACTCGACACCAAGACCCAGAACCTATCGATGATGTCACAGAAGTAC
AAGAAGGACGCCAAGCTGCTCAACCGAAAGTCCATGTACGTGAAGGCGAT
GGCCTTGGGCATGATACTTCTAGTGTTCATCATGTATTTCTGGGTTCTGG
CAAGCTTTCTAGACCAT
BO09378.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:54:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec22-RA | 636 | CG7359-PA | 1..633 | 17..649 | 3165 | 100 | Plus |
Sec22-RB | 642 | CG7359-PB | 1..639 | 17..649 | 3070 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:54:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec22-RA | 1743 | CG7359-RA | 409..1042 | 16..649 | 3170 | 100 | Plus |
Sec22-RB | 1749 | CG7359-RB | 409..1048 | 16..649 | 3075 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:54:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 806969..807270 | 202..503 | 1510 | 100 | Plus |
X | 23542271 | X | 807353..807499 | 503..649 | 735 | 100 | Plus |
X | 23542271 | X | 806630..806742 | 89..201 | 565 | 100 | Plus |
X | 23542271 | X | 806484..806559 | 16..91 | 380 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 08:54:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2618..2665 | 382..428 | 111 | 72.9 | Plus |
BO09378.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:42 Download gff for
BO09378.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7359-RA | 1..636 | 17..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:02 Download gff for
BO09378.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7359-RA | 406..1049 | 9..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:32 Download gff for
BO09378.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec22-RA | 410..1042 | 17..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:35:06 Download gff for
BO09378.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7359-RA | 414..1046 | 17..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:28:27 Download gff for
BO09378.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec22-RA | 410..1042 | 17..651 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:28:27 Download gff for
BO09378.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 806485..806559 | 17..91 | 100 | -> | Plus |
X | 806633..806742 | 92..201 | 100 | -> | Plus |
X | 806969..807270 | 202..503 | 100 | -> | Plus |
X | 807354..807499 | 504..651 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:32 Download gff for
BO09378.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 700518..700592 | 17..91 | 100 | -> | Plus |
arm_X | 700666..700775 | 92..201 | 100 | -> | Plus |
arm_X | 701002..701303 | 202..503 | 100 | -> | Plus |
arm_X | 701387..701532 | 504..651 | 98 | | Plus |
BO09378.pep Sequence
Translation from 16 to 667
> BO09378.pep
MALLTMIARVIDGLPLVGTMQDDEQSGRSILDYQNQAKMLFRKLGTHSPA
RCSIETGPYLFHYLIENDVCYLVMVDKMYSKRLAFNYLEDLAQEFHANYG
RRVNSVTRPYAFIEFDVYIQKAKKQLTDRRRNISNINTQLQDVQRIMVQN
IDDVLQRGTVLAELDTKTQNLSMMSQKYKKDAKLLNRKSMYVKAMALGMI
LLVFIMYFWVLASFLDH
BO09378.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:43:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec22-PA | 211 | CG7359-PA | 1..211 | 1..211 | 1075 | 100 | Plus |
Sec22-PB | 213 | CG7359-PB | 1..213 | 1..211 | 1062 | 99.1 | Plus |
Vamp7-PC | 218 | CG1599-PC | 35..202 | 43..207 | 191 | 28.4 | Plus |
Vamp7-PA | 218 | CG1599-PA | 35..202 | 43..207 | 191 | 28.4 | Plus |