Clone BO09378 Report

Search the DGRC for BO09378

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:93
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptSec22-RA
Protein status:BO09378.pep: validated full length
Sequenced Size:667

Clone Sequence Records

BO09378.3prime Sequence

665 bp (664 high quality bases) assembled on 2006-01-18

> BO09378.3prime
ATGGTCTAGAAAGCTTGCCAGAACCCAGAAATACATGATGAACACTAGAA
GTATCATGCCCAAGGCCATCGCCTTCACGTACATGGACTTTCGGTTGAGC
AGCTTGGCGTCCTTCTTGTACTTCTGTGACATCATCGATAGGTTCTGGGT
CTTGGTGTCGAGTTCCGCCAGCACTGTGCCACGTTGGAGCACGTCGTCAA
TGTTTTGCACCATGATGCGCTGCACATCCTGCAGCTGTGTGTTGATGTTG
CTGATGTTGCGTCTGCGGTCCGTCAACTGTTTTTTCGCCTTCTGTATGTA
CACGTCAAACTCGATGAATGCGTATGGGCGAGTCACTGAGTTTACTCGCC
GGCCGTAGTTAGCATGGAACTCCTGGGCCAGGTCCTCCAGGTAATTGAAG
GCCAGTCGCTTTGAGTACATCTTGTCCACCATCACCAGGTAGCAGACGTC
GTTCTCGATTAGGTAGTGGAATAGGTAGGGTCCGGTCTCGATACTGCATC
GAGCCGGGGAGTGGGTACCCAGCTTGCGGAAGAGCATCTTAGCCTGGTTT
TGGTAGTCCAGTATGCTGCGTCCGCTCTGCTCGTCATCCTGCATGGTCCC
CACCAGAGGAAGGCCATCGATGACCCTGGCTATCATGGTCAGCAGCGCCA
TGTCGACTGATAACT

BO09378.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG7359-PA 636 CG7359-RA 1..633 651..19 3165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
Sec22-RA 1743 CG7359-RA 409..1042 652..19 3170 100 Minus
Sec22-RB 1749 CG7359-RB 409..1048 652..19 3100 99.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:33:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 806969..807270 466..165 1510 100 Minus
X 23542271 X 807353..807499 165..19 735 100 Minus
X 23542271 X 806630..806742 579..467 565 100 Minus
X 23542271 X 806484..806559 652..577 380 100 Minus
Blast to na_te.dros performed 2015-02-10 22:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2618..2665 286..240 111 72.9 Minus

BO09378.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:10 Download gff for BO09378.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7359-PA 1..636 15..651 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:25 Download gff for BO09378.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7359-PA 1..636 15..651 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:25:27 Download gff for BO09378.3prime
Subject Subject Range Query Range Percent Splice Strand
Sec22-RA 402..1045 15..659 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:31 Download gff for BO09378.3prime
Subject Subject Range Query Range Percent Splice Strand
Sec22-RA 402..1045 15..659 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:31 Download gff for BO09378.3prime
Subject Subject Range Query Range Percent Splice Strand
X 806477..806559 577..659 96 -> Minus
X 806633..806742 467..576 100 -> Minus
X 806969..807270 165..466 100 -> Minus
X 807354..807502 15..164 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:25:27 Download gff for BO09378.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 700510..700592 577..659 96 -> Minus
arm_X 700666..700775 467..576 100 -> Minus
arm_X 701002..701303 165..466 100 -> Minus
arm_X 701387..701535 15..164 98   Minus

BO09378.5prime Sequence

665 bp (664 high quality bases) assembled on 2006-01-18

> BO09378.5prime
GAAGTTATCAGTCGACATGGCGCTGCTGACCATGATAGCCAGGGTCATCG
ATGGCCTTCCTCTGGTGGGGACCATGCAGGATGACGAGCAGAGCGGACGC
AGCATACTGGACTACCAAAACCAGGCTAAGATGCTCTTCCGCAAGCTGGG
TACCCACTCCCCGGCTCGATGCAGTATCGAGACCGGACCCTACCTATTCC
ACTACCTAATCGAGAACGACGTCTGCTACCTGGTGATGGTGGACAAGATG
TACTCAAAGCGACTGGCCTTCAATTACCTGGAGGACCTGGCCCAGGAGTT
CCATGCTAACTACGGCCGGCGAGTAAACTCAGTGACTCGCCCATACGCAT
TCATCGAGTTTGACGTGTACATACAGAAGGCGAAAAAACAGTTGACGGAC
CGCAGACGCAACATCAGCAACATCAACACACAGCTGCAGGATGTGCAGCG
CATCATGGTGCAAAACATTGACGACGTGCTCCAACGTGGCACAGTGCTGG
CGGAACTCGACACCAAGACCCAGAACCTATCGATGATGTCACAGAAGTAC
AAGAAGGACGCCAAGCTGCTCAACCGAAAGTCCATGTACGTGAAGGCGAT
GGCCTTGGGCATGATACTTCTAGTGTTCATCATGTATTTCTGGGTTCTGG
CAAGCTTTCTAGACC

BO09378.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG7359-PA 636 CG7359-RA 1..633 17..649 3165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
Sec22-RA 1743 CG7359-RA 409..1042 16..649 3170 100 Plus
Sec22-RB 1749 CG7359-RB 409..1048 16..649 3100 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 806969..807270 202..503 1510 100 Plus
X 23542271 X 807353..807499 503..649 735 100 Plus
X 23542271 X 806630..806742 89..201 565 100 Plus
X 23542271 X 806484..806559 16..91 380 100 Plus
Blast to na_te.dros performed 2015-02-10 21:23:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2618..2665 382..428 111 72.9 Plus

BO09378.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:10 Download gff for BO09378.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7359-PA 1..636 17..653 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:27 Download gff for BO09378.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7359-PA 1..636 17..653 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:24:22 Download gff for BO09378.5prime
Subject Subject Range Query Range Percent Splice Strand
Sec22-RA 402..1045 9..653 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:02 Download gff for BO09378.5prime
Subject Subject Range Query Range Percent Splice Strand
Sec22-RA 402..1045 9..653 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:02 Download gff for BO09378.5prime
Subject Subject Range Query Range Percent Splice Strand
X 806477..806559 9..91 96 -> Plus
X 806633..806742 92..201 100 -> Plus
X 806969..807270 202..503 100 -> Plus
X 807354..807502 504..653 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:24:22 Download gff for BO09378.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 700510..700592 9..91 96 -> Plus
arm_X 700666..700775 92..201 100 -> Plus
arm_X 701002..701303 202..503 100 -> Plus
arm_X 701387..701535 504..653 98   Plus

BO09378.complete Sequence

667 bp assembled on 2007-10-17

GenBank Submission: FJ631489

> BO09378.complete
GAAGTTATCAGTCGACATGGCGCTGCTGACCATGATAGCCAGGGTCATCG
ATGGCCTTCCTCTGGTGGGGACCATGCAGGATGACGAGCAGAGCGGACGC
AGCATACTGGACTACCAAAACCAGGCTAAGATGCTCTTCCGCAAGCTGGG
TACCCACTCCCCGGCTCGATGCAGTATCGAGACCGGACCCTACCTATTCC
ACTACCTAATCGAGAACGACGTCTGCTACCTGGTGATGGTGGACAAGATG
TACTCAAAGCGACTGGCCTTCAATTACCTGGAGGACCTGGCCCAGGAGTT
CCATGCTAACTACGGCCGGCGAGTAAACTCAGTGACTCGCCCATACGCAT
TCATCGAGTTTGACGTGTACATACAGAAGGCGAAAAAACAGTTGACGGAC
CGCAGACGCAACATCAGCAACATCAACACACAGCTGCAGGATGTGCAGCG
CATCATGGTGCAAAACATTGACGACGTGCTCCAACGTGGCACAGTGCTGG
CGGAACTCGACACCAAGACCCAGAACCTATCGATGATGTCACAGAAGTAC
AAGAAGGACGCCAAGCTGCTCAACCGAAAGTCCATGTACGTGAAGGCGAT
GGCCTTGGGCATGATACTTCTAGTGTTCATCATGTATTTCTGGGTTCTGG
CAAGCTTTCTAGACCAT

BO09378.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
Sec22-RA 636 CG7359-PA 1..633 17..649 3165 100 Plus
Sec22-RB 642 CG7359-PB 1..639 17..649 3070 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
Sec22-RA 1743 CG7359-RA 409..1042 16..649 3170 100 Plus
Sec22-RB 1749 CG7359-RB 409..1048 16..649 3075 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 806969..807270 202..503 1510 100 Plus
X 23542271 X 807353..807499 503..649 735 100 Plus
X 23542271 X 806630..806742 89..201 565 100 Plus
X 23542271 X 806484..806559 16..91 380 100 Plus
Blast to na_te.dros performed 2014-11-27 08:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2618..2665 382..428 111 72.9 Plus

BO09378.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:42 Download gff for BO09378.complete
Subject Subject Range Query Range Percent Splice Strand
CG7359-RA 1..636 17..653 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:02 Download gff for BO09378.complete
Subject Subject Range Query Range Percent Splice Strand
CG7359-RA 406..1049 9..653 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:32 Download gff for BO09378.complete
Subject Subject Range Query Range Percent Splice Strand
Sec22-RA 410..1042 17..651 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:35:06 Download gff for BO09378.complete
Subject Subject Range Query Range Percent Splice Strand
CG7359-RA 414..1046 17..651 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:28:27 Download gff for BO09378.complete
Subject Subject Range Query Range Percent Splice Strand
Sec22-RA 410..1042 17..651 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:28:27 Download gff for BO09378.complete
Subject Subject Range Query Range Percent Splice Strand
X 806485..806559 17..91 100 -> Plus
X 806633..806742 92..201 100 -> Plus
X 806969..807270 202..503 100 -> Plus
X 807354..807499 504..651 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:32 Download gff for BO09378.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 700518..700592 17..91 100 -> Plus
arm_X 700666..700775 92..201 100 -> Plus
arm_X 701002..701303 202..503 100 -> Plus
arm_X 701387..701532 504..651 98   Plus

BO09378.pep Sequence

Translation from 16 to 667

> BO09378.pep
MALLTMIARVIDGLPLVGTMQDDEQSGRSILDYQNQAKMLFRKLGTHSPA
RCSIETGPYLFHYLIENDVCYLVMVDKMYSKRLAFNYLEDLAQEFHANYG
RRVNSVTRPYAFIEFDVYIQKAKKQLTDRRRNISNINTQLQDVQRIMVQN
IDDVLQRGTVLAELDTKTQNLSMMSQKYKKDAKLLNRKSMYVKAMALGMI
LLVFIMYFWVLASFLDH

BO09378.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
Sec22-PA 211 CG7359-PA 1..211 1..211 1075 100 Plus
Sec22-PB 213 CG7359-PB 1..213 1..211 1062 99.1 Plus
Vamp7-PC 218 CG1599-PC 35..202 43..207 191 28.4 Plus
Vamp7-PA 218 CG1599-PA 35..202 43..207 191 28.4 Plus