Clone BO09383 Report

Search the DGRC for BO09383

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:93
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptStim-RA
Protein status:BO09383.pep: validated full length
Sequenced Size:1744

Clone Sequence Records

BO09383.3prime Sequence

914 bp (835 high quality bases) assembled on 2006-01-18

> BO09383.3prime
ATGGTCTAGAAAGCTTGCTTCCGTGGCAAGCAGCGAAAAGTTCTCAAAAT
TCAGCTTACCTTGTATGGACTCATCGTCCAGGTCTTCGGTGCTGTTGGTA
ATACGTGCTCTAGAACCCTTGGTTGAACTCATGCCCATGGAACTTTGTAA
GCCCCCATTTCGACCGTACAGAACATTCTCCAAGTAGGGCAGACCATTGT
TGTTCACAATGTTTAAGCCAAGGCACGTCTCGATTTGCTTCCAGCGATGC
AGTCGTTCTTGCAGCTCGTTTGTTACATCTCCGAGGGCATTCCGTGCCTC
AACAATCGACCGATCCACATCATCAATACTCTTTCCGTGCGTGGAAACGA
ACGCACCCACCAAACTTGACCGTTTCTTACGCAATTTCTCACAAGCCTCT
CTGGCCGACTGTAGCTGCTTCTCAGCCGACGTGCGCTTCTTCTGATGATT
CTTACTTTCTAGTTCATATGTGTATTGAAGCCATGATTGCAGTTGTGGCG
GCGGTGACCAGCAGTTGTCTACTAGCTCGAATTCGGCGCGGGACAATTCG
TTGCGCAACATCTCGATTTCCTTTTTCAGCTGCTGAACTTCCAAATCCGA
GTTCGATGAACTGAGAGTGGGCGCTTCTTTTAGACGACGCTCCAAATCTA
GTTTTTCTGTTGCCACATTTTCCTGCTCCATTCTGGCCCGTTCTAGTTCC
TTCTGCATCTCCTGTAGACTTTGCTCAGCCCTCTGCAATCCCTCCATATC
CTGGGCCATTCGACGCAGATGCCGTTTGGCATTCTTATTTTGCTGATAGG
CGTACCAACAACCAATAATAGCACTAAGCAACAGTGTTACCAATATGTAG
TCTTTCCAGCGGGTACCAGTTTCTCGCGGTGGCCCAAACAGAACCACATC
CATTGCCTTCAATG

BO09383.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG9126-PB 1365 Stim-RB 467..1362 914..19 4480 100 Minus
CG9126-PC 1434 Stim-RC 536..1431 914..19 4480 100 Minus
CG9126-PA 1713 Stim-RA 815..1710 914..19 4480 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
Stim-RF 2319 CG9126-RF 1071..1966 914..19 4480 100 Minus
Stim-RA 2255 CG9126-RA 1007..1902 914..19 4480 100 Minus
Stim-RD 2141 CG9126-RD 1007..1863 914..58 4285 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15935417..15936010 108..701 2970 100 Plus
X 23542271 X 15936075..15936250 699..874 880 100 Plus
X 23542271 X 15935254..15935344 19..109 455 100 Plus
X 23542271 X 15936319..15936360 873..914 210 100 Plus
Blast to na_te.dros performed on 2015-01-31 14:48:10 has no hits.

BO09383.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:18 Download gff for BO09383.3prime
Subject Subject Range Query Range Percent Splice Strand
Stim-PC 536..1434 15..914 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:37 Download gff for BO09383.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9126-PA 815..1713 15..914 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:09:39 Download gff for BO09383.3prime
Subject Subject Range Query Range Percent Splice Strand
Stim-RA 1007..1910 11..914 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:31:45 Download gff for BO09383.3prime
Subject Subject Range Query Range Percent Splice Strand
Stim-RA 1007..1910 11..914 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:31:45 Download gff for BO09383.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15935246..15935342 11..107 96 <- Plus
X 15935417..15936008 108..699 100 <- Plus
X 15936076..15936248 700..872 100 <- Plus
X 15936319..15936360 873..914 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:09:39 Download gff for BO09383.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15829279..15829375 11..107 96 <- Plus
arm_X 15829450..15830041 108..699 100 <- Plus
arm_X 15830109..15830281 700..872 100 <- Plus
arm_X 15830352..15830393 873..914 100   Plus

BO09383.5prime Sequence

862 bp (804 high quality bases) assembled on 2006-01-18

> BO09383.5prime
GAAGTTATCAGTCGACATGCGAAAGAATACCATTTGGAACTACTCTTTAA
TATTCTTCTGCTGTGTGCTGAAGAGCATAAGTACGCTAGATCATGGCCCG
CACACAGTATCAGTCGATTCGAATCGACACAACACACAGCATCAGTATAA
GCAAAATCCCAATGTTGCCTCACAACGTCACTCATCCCACGAATCTGGTC
AGAGTTTACACAATTCGCAATCGGAACATGTCACCCATATTGCCGCATCG
CACGCCGGAAGCGGCGGAGAGCACTCCACTCATTTGGCGCAAAATCTGCA
CAGGAGCTCATATAATCTTCTGAGCGAGGCCATGTCCCAGGCTGTCAGCA
ATGAATTTAGTTCCATGGGAAGTGGTTCAGCGGATGGAGCGTGTGCTGCT
GATGATTTTGATTGCTACAGTGGAAGTGTTCAGGATCGCTTTGGCATGGA
GGCTATTGCCAGCTTGCATCGTCAGCTAGATGATGACGATAATGGAAACA
TCGATCTGAGCGAGTCCGATGACTTTTTGCGGGAGGAATTGAAGTACGAC
TCGGGCTACGAAAAGCGGCAGAAAGCGTTTCACTTCAATGACGATATGCA
TATATCGGTCAAAGAACTTTGGGAGGCCTGGCTCAGATCGGAGGTGCATA
ATTGGACCATCGAGCAGACCACCGATTGGCTGGCTCAGTCCGTTCAGCTG
CCGCAATACGTTGATCTGTTCAAATTACACAAGGTTACTGGCGCTGCCTT
GCCAAGATTGGCTGTGAATAATCTTCAGTATGTTGGCAATGTACTTGGCA
TCAAAGACCCTATACACAAACAAAAAATCTCATTGAAAGCAATGGATGTG
GTTCTGTTTGGG

BO09383.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG9126-PA 1713 Stim-RA 1..846 17..862 4205 99.8 Plus
CG9126-PC 1434 Stim-RC 64..567 359..862 2495 99.8 Plus
CG9126-PB 1365 Stim-RB 1..498 365..862 2465 99.7 Plus
CG9126-PC 1434 Stim-RC 1..66 17..82 330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:31:30
Subject Length Description Subject Range Query Range Score Percent Strand
Stim-RD 2141 CG9126-RD 193..1038 17..862 4215 99.9 Plus
Stim-RA 2255 CG9126-RA 193..1038 17..862 4215 99.9 Plus
Stim-RF 2319 CG9126-RF 600..1102 360..862 2500 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15938756..15939100 361..17 1725 100 Minus
X 23542271 X 15936792..15937031 763..524 1170 99.2 Minus
X 23542271 X 15937591..15937754 523..360 820 100 Minus
X 23542271 X 15936329..15936436 862..755 525 99.1 Minus
Blast to na_te.dros performed on 2015-02-11 10:31:27 has no hits.

BO09383.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:19 Download gff for BO09383.5prime
Subject Subject Range Query Range Percent Splice Strand
Stim-PA 1..846 17..862 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:39 Download gff for BO09383.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9126-PA 1..846 17..862 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:57:51 Download gff for BO09383.5prime
Subject Subject Range Query Range Percent Splice Strand
Stim-RA 185..1038 8..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:33 Download gff for BO09383.5prime
Subject Subject Range Query Range Percent Splice Strand
Stim-RA 185..1038 8..862 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:33 Download gff for BO09383.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15936329..15936434 757..862 99 <- Minus
X 15936799..15937031 524..756 100 <- Minus
X 15937591..15937754 360..523 100 <- Minus
X 15938758..15939108 8..359 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:57:51 Download gff for BO09383.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15830362..15830467 757..862 99 <- Minus
arm_X 15830832..15831064 524..756 100 <- Minus
arm_X 15831624..15831787 360..523 100 <- Minus
arm_X 15832791..15833141 8..359 98   Minus

BO09383.complete Sequence

1744 bp (1744 high quality bases) assembled on 2006-08-21

GenBank Submission: FJ631490

> BO09383.complete
GAAGTTATCAGTCGACATGCGAAAGAATACCATTTGGAACTACTCTTTAA
TATTCTTCTGCTGTGTGCTGAAGAGCATAAGTACGCTAGATCATGGCCCG
CACACAGTATCAGTCGATTCGAATCGACACAACACACAGCATCAGTATAA
GCAAAATCCCAATGTTGCCTCACAACGTCACTCATCCCACGAATCTGGTC
AGAGTTTACACAATTCGCAATCGGAACATGTCACCCATATTGCCGCATCG
CACGCCGGAAGCGGCGGAGAGCACTCCACTCATTTGGCGCAAAATCTGCA
CAGGAGCTCATATAATCTTCTGAGCGAGGCCATGTCCCAGGCTGTCAGCA
ATGAATTTAGTTCCATGGGAAGTGGTTCAGCGGATGGAGCGTGTGCTGCT
GATGATTTTGATTGCTACAGTGGAAGTGTTCAGGATCGCTTTGGCATGGA
GGCTATTGCCAGCTTGCATCGTCAGCTAGATGATGACGATAATGGAAACA
TCGATCTGAGCGAGTCCGATGACTTTTTGCGGGAGGAATTGAAGTACGAC
TCGGGCTACGAAAAGCGGCAGAAAGCGTTTCACTTCAATGACGATATGCA
TATATCGGTCAAAGAACTTTGGGAGGCCTGGCTCAGATCGGAGGTGCATA
ATTGGACCATCGAGCAGACCACCGATTGGCTGGCTCAGTCCGTTCAGCTG
CCGCAATACGTTGATCTGTTCAAATTACACAAGGTTACTGGCGCTGCCTT
GCCAAGATTGGCTGTGAATAATCTTCAGTATGTTGGCAATGTACTTGGCA
TCAAAGACCCTATACACAAACAAAAAATCTCATTGAAGGCAATGGATGTG
GTTCTGTTTGGGCCACCGCGAGAAACTGGTACCCGCTGGAAAGACTACAT
ATTGGTAACACTGTTGCTTAGTGCTATTATTGGTTGTTGGTACGCCTATC
AGCAAAATAAGAATGCCAAACGGCATCTGCGTCGAATGGCCCAGGATATG
GAGGGATTGCAGAGGGCTGAGCAAAGTCTACAGGAGATGCAGAAGGAACT
AGAACGGGCCAGAATGGAGCAGGAAAATGTGGCAACAGAAAAACTAGATT
TGGAGCGTCGTCTAAAAGAAGCGCCCACTCTCAGTTCATCGAACTCGGAT
TTGGAAGTTCAGCAGCTGAAAAAGGAAATCGAGATGTTGCGCAACGAATT
GTCCCGCGCCGAATTCGAGCTAGTAGACAACTGCTGGTCACCGCCGCCAC
AACTGCAATCATGGCTTCAATACACATATGAACTAGAAAGTAAGAATCAT
CAGAAGAAGCGCACGTCGGCTGAGAAGCAGCTACAGTCGGCCAGAGAGGC
TTGTGAGAAATTGCGTAAGAAACGGTCAAGTTTGGTGGGTGCGTTCGTTT
CCACGCACGGAAAGAGTATTGATGATGTGGATCGGTCGATTGTTGAGGCA
CGGAATGCCCTCGGAGATGTAACAAACGAGCTGCAAGAACGACTGCATCG
CTGGAAGCAAATCGAGACGTGCCTTGGCTTAAACATTGTGAACAACAATG
GTCTGCCCTACTTGGAGAATGTTCTGTACGGTCGAAATGGGGGCTTACAA
AGTTCCATGGGCATGAGTTCAACCAAGGGTTCTAGAGCACGTATTACCAA
CAGCACCGAAGACCTGGACGATGAGTCCATACAAGGTAAGCTGAATTTTG
AGAACTTTTCGCTGCTTGCCACGGAAGCAAGCTTTCTAGACCAT

BO09383.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
Stim-RA 1713 CG9126-PA 1..1710 17..1726 8550 100 Plus
Stim-RD 1686 CG9126-PD 1..1671 17..1687 8355 100 Plus
Stim-RF 354 CG9126-PF 1..345 17..361 1725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
Stim-RA 2255 CG9126-RA 193..1902 17..1726 8550 100 Plus
Stim-RD 2141 CG9126-RD 193..1863 17..1687 8355 100 Plus
Stim-RF 2319 CG9126-RF 600..1966 360..1726 6835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:50:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15935417..15936010 1637..1044 2970 100 Minus
X 23542271 X 15938756..15939100 361..17 1725 100 Minus
X 23542271 X 15936792..15937031 763..524 1170 99.2 Minus
X 23542271 X 15936075..15936250 1046..871 880 100 Minus
X 23542271 X 15937591..15937754 523..360 820 100 Minus
X 23542271 X 15936319..15936436 872..755 590 100 Minus
X 23542271 X 15935254..15935344 1726..1636 455 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:50:18 has no hits.

BO09383.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:05 Download gff for BO09383.complete
Subject Subject Range Query Range Percent Splice Strand
Stim-RA 1..1713 17..1730 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:10:20 Download gff for BO09383.complete
Subject Subject Range Query Range Percent Splice Strand
Stim-RA 169..1894 8..1734 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:00:35 Download gff for BO09383.complete
Subject Subject Range Query Range Percent Splice Strand
Stim-RA 193..1902 17..1728 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:05 Download gff for BO09383.complete
Subject Subject Range Query Range Percent Splice Strand
Stim-RA 169..1894 8..1734 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:27 Download gff for BO09383.complete
Subject Subject Range Query Range Percent Splice Strand
Stim-RA 193..1902 17..1728 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:27 Download gff for BO09383.complete
Subject Subject Range Query Range Percent Splice Strand
X 15936799..15937031 524..756 100 <- Minus
X 15937591..15937754 360..523 100 <- Minus
X 15938758..15939100 17..359 100   Minus
X 15936319..15936434 757..872 100 <- Minus
X 15935252..15935342 1638..1728 97 <- Minus
X 15935417..15936008 1046..1637 100 <- Minus
X 15936076..15936248 873..1045 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:00:35 Download gff for BO09383.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15829285..15829375 1638..1728 97 <- Minus
arm_X 15829450..15830041 1046..1637 100 <- Minus
arm_X 15830109..15830281 873..1045 100 <- Minus
arm_X 15830352..15830467 757..872 100 <- Minus
arm_X 15830832..15831064 524..756 100 <- Minus
arm_X 15831624..15831787 360..523 100 <- Minus
arm_X 15832791..15833133 17..359 100   Minus

BO09383.pep Sequence

Translation from 16 to 1744

> BO09383.pep
MRKNTIWNYSLIFFCCVLKSISTLDHGPHTVSVDSNRHNTQHQYKQNPNV
ASQRHSSHESGQSLHNSQSEHVTHIAASHAGSGGEHSTHLAQNLHRSSYN
LLSEAMSQAVSNEFSSMGSGSADGACAADDFDCYSGSVQDRFGMEAIASL
HRQLDDDDNGNIDLSESDDFLREELKYDSGYEKRQKAFHFNDDMHISVKE
LWEAWLRSEVHNWTIEQTTDWLAQSVQLPQYVDLFKLHKVTGAALPRLAV
NNLQYVGNVLGIKDPIHKQKISLKAMDVVLFGPPRETGTRWKDYILVTLL
LSAIIGCWYAYQQNKNAKRHLRRMAQDMEGLQRAEQSLQEMQKELERARM
EQENVATEKLDLERRLKEAPTLSSSNSDLEVQQLKKEIEMLRNELSRAEF
ELVDNCWSPPPQLQSWLQYTYELESKNHQKKRTSAEKQLQSAREACEKLR
KKRSSLVGAFVSTHGKSIDDVDRSIVEARNALGDVTNELQERLHRWKQIE
TCLGLNIVNNNGLPYLENVLYGRNGGLQSSMGMSSTKGSRARITNSTEDL
DDESIQGKLNFENFSLLATEASFLDH

BO09383.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
Stim-PA 570 CG9126-PA 1..570 1..570 2971 100 Plus
Stim-PD 561 CG9126-PD 1..557 1..557 2907 100 Plus
Stim-PF 117 CG9126-PF 1..117 1..117 617 99.1 Plus
Stim-PG 117 CG9126-PG 1..117 1..117 617 99.1 Plus