Clone Sequence Records
BO09383.3prime Sequence
914 bp (835 high quality bases) assembled on 2006-01-18
> BO09383.3prime
ATGGTCTAGAAAGCTTGCTTCCGTGGCAAGCAGCGAAAAGTTCTCAAAAT
TCAGCTTACCTTGTATGGACTCATCGTCCAGGTCTTCGGTGCTGTTGGTA
ATACGTGCTCTAGAACCCTTGGTTGAACTCATGCCCATGGAACTTTGTAA
GCCCCCATTTCGACCGTACAGAACATTCTCCAAGTAGGGCAGACCATTGT
TGTTCACAATGTTTAAGCCAAGGCACGTCTCGATTTGCTTCCAGCGATGC
AGTCGTTCTTGCAGCTCGTTTGTTACATCTCCGAGGGCATTCCGTGCCTC
AACAATCGACCGATCCACATCATCAATACTCTTTCCGTGCGTGGAAACGA
ACGCACCCACCAAACTTGACCGTTTCTTACGCAATTTCTCACAAGCCTCT
CTGGCCGACTGTAGCTGCTTCTCAGCCGACGTGCGCTTCTTCTGATGATT
CTTACTTTCTAGTTCATATGTGTATTGAAGCCATGATTGCAGTTGTGGCG
GCGGTGACCAGCAGTTGTCTACTAGCTCGAATTCGGCGCGGGACAATTCG
TTGCGCAACATCTCGATTTCCTTTTTCAGCTGCTGAACTTCCAAATCCGA
GTTCGATGAACTGAGAGTGGGCGCTTCTTTTAGACGACGCTCCAAATCTA
GTTTTTCTGTTGCCACATTTTCCTGCTCCATTCTGGCCCGTTCTAGTTCC
TTCTGCATCTCCTGTAGACTTTGCTCAGCCCTCTGCAATCCCTCCATATC
CTGGGCCATTCGACGCAGATGCCGTTTGGCATTCTTATTTTGCTGATAGG
CGTACCAACAACCAATAATAGCACTAAGCAACAGTGTTACCAATATGTAG
TCTTTCCAGCGGGTACCAGTTTCTCGCGGTGGCCCAAACAGAACCACATC
CATTGCCTTCAATG
BO09383.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9126-PB | 1365 | Stim-RB | 467..1362 | 914..19 | 4480 | 100 | Minus |
CG9126-PC | 1434 | Stim-RC | 536..1431 | 914..19 | 4480 | 100 | Minus |
CG9126-PA | 1713 | Stim-RA | 815..1710 | 914..19 | 4480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:48:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Stim-RF | 2319 | CG9126-RF | 1071..1966 | 914..19 | 4480 | 100 | Minus |
Stim-RA | 2255 | CG9126-RA | 1007..1902 | 914..19 | 4480 | 100 | Minus |
Stim-RD | 2141 | CG9126-RD | 1007..1863 | 914..58 | 4285 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:48:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15935417..15936010 | 108..701 | 2970 | 100 | Plus |
X | 23542271 | X | 15936075..15936250 | 699..874 | 880 | 100 | Plus |
X | 23542271 | X | 15935254..15935344 | 19..109 | 455 | 100 | Plus |
X | 23542271 | X | 15936319..15936360 | 873..914 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 14:48:10 has no hits.
BO09383.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:18 Download gff for
BO09383.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Stim-PC | 536..1434 | 15..914 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:37 Download gff for
BO09383.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9126-PA | 815..1713 | 15..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:09:39 Download gff for
BO09383.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Stim-RA | 1007..1910 | 11..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:31:45 Download gff for
BO09383.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Stim-RA | 1007..1910 | 11..914 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:31:45 Download gff for
BO09383.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15935246..15935342 | 11..107 | 96 | <- | Plus |
X | 15935417..15936008 | 108..699 | 100 | <- | Plus |
X | 15936076..15936248 | 700..872 | 100 | <- | Plus |
X | 15936319..15936360 | 873..914 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:09:39 Download gff for
BO09383.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15829279..15829375 | 11..107 | 96 | <- | Plus |
arm_X | 15829450..15830041 | 108..699 | 100 | <- | Plus |
arm_X | 15830109..15830281 | 700..872 | 100 | <- | Plus |
arm_X | 15830352..15830393 | 873..914 | 100 | | Plus |
BO09383.5prime Sequence
862 bp (804 high quality bases) assembled on 2006-01-18
> BO09383.5prime
GAAGTTATCAGTCGACATGCGAAAGAATACCATTTGGAACTACTCTTTAA
TATTCTTCTGCTGTGTGCTGAAGAGCATAAGTACGCTAGATCATGGCCCG
CACACAGTATCAGTCGATTCGAATCGACACAACACACAGCATCAGTATAA
GCAAAATCCCAATGTTGCCTCACAACGTCACTCATCCCACGAATCTGGTC
AGAGTTTACACAATTCGCAATCGGAACATGTCACCCATATTGCCGCATCG
CACGCCGGAAGCGGCGGAGAGCACTCCACTCATTTGGCGCAAAATCTGCA
CAGGAGCTCATATAATCTTCTGAGCGAGGCCATGTCCCAGGCTGTCAGCA
ATGAATTTAGTTCCATGGGAAGTGGTTCAGCGGATGGAGCGTGTGCTGCT
GATGATTTTGATTGCTACAGTGGAAGTGTTCAGGATCGCTTTGGCATGGA
GGCTATTGCCAGCTTGCATCGTCAGCTAGATGATGACGATAATGGAAACA
TCGATCTGAGCGAGTCCGATGACTTTTTGCGGGAGGAATTGAAGTACGAC
TCGGGCTACGAAAAGCGGCAGAAAGCGTTTCACTTCAATGACGATATGCA
TATATCGGTCAAAGAACTTTGGGAGGCCTGGCTCAGATCGGAGGTGCATA
ATTGGACCATCGAGCAGACCACCGATTGGCTGGCTCAGTCCGTTCAGCTG
CCGCAATACGTTGATCTGTTCAAATTACACAAGGTTACTGGCGCTGCCTT
GCCAAGATTGGCTGTGAATAATCTTCAGTATGTTGGCAATGTACTTGGCA
TCAAAGACCCTATACACAAACAAAAAATCTCATTGAAAGCAATGGATGTG
GTTCTGTTTGGG
BO09383.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9126-PA | 1713 | Stim-RA | 1..846 | 17..862 | 4205 | 99.8 | Plus |
CG9126-PC | 1434 | Stim-RC | 64..567 | 359..862 | 2495 | 99.8 | Plus |
CG9126-PB | 1365 | Stim-RB | 1..498 | 365..862 | 2465 | 99.7 | Plus |
CG9126-PC | 1434 | Stim-RC | 1..66 | 17..82 | 330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:31:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Stim-RD | 2141 | CG9126-RD | 193..1038 | 17..862 | 4215 | 99.9 | Plus |
Stim-RA | 2255 | CG9126-RA | 193..1038 | 17..862 | 4215 | 99.9 | Plus |
Stim-RF | 2319 | CG9126-RF | 600..1102 | 360..862 | 2500 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:31:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15938756..15939100 | 361..17 | 1725 | 100 | Minus |
X | 23542271 | X | 15936792..15937031 | 763..524 | 1170 | 99.2 | Minus |
X | 23542271 | X | 15937591..15937754 | 523..360 | 820 | 100 | Minus |
X | 23542271 | X | 15936329..15936436 | 862..755 | 525 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:31:27 has no hits.
BO09383.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:19 Download gff for
BO09383.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Stim-PA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:39 Download gff for
BO09383.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9126-PA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:57:51 Download gff for
BO09383.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Stim-RA | 185..1038 | 8..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:33 Download gff for
BO09383.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Stim-RA | 185..1038 | 8..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:33 Download gff for
BO09383.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15936329..15936434 | 757..862 | 99 | <- | Minus |
X | 15936799..15937031 | 524..756 | 100 | <- | Minus |
X | 15937591..15937754 | 360..523 | 100 | <- | Minus |
X | 15938758..15939108 | 8..359 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:57:51 Download gff for
BO09383.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15830362..15830467 | 757..862 | 99 | <- | Minus |
arm_X | 15830832..15831064 | 524..756 | 100 | <- | Minus |
arm_X | 15831624..15831787 | 360..523 | 100 | <- | Minus |
arm_X | 15832791..15833141 | 8..359 | 98 | | Minus |
BO09383.complete Sequence
1744 bp (1744 high quality bases) assembled on 2006-08-21
GenBank Submission: FJ631490
> BO09383.complete
GAAGTTATCAGTCGACATGCGAAAGAATACCATTTGGAACTACTCTTTAA
TATTCTTCTGCTGTGTGCTGAAGAGCATAAGTACGCTAGATCATGGCCCG
CACACAGTATCAGTCGATTCGAATCGACACAACACACAGCATCAGTATAA
GCAAAATCCCAATGTTGCCTCACAACGTCACTCATCCCACGAATCTGGTC
AGAGTTTACACAATTCGCAATCGGAACATGTCACCCATATTGCCGCATCG
CACGCCGGAAGCGGCGGAGAGCACTCCACTCATTTGGCGCAAAATCTGCA
CAGGAGCTCATATAATCTTCTGAGCGAGGCCATGTCCCAGGCTGTCAGCA
ATGAATTTAGTTCCATGGGAAGTGGTTCAGCGGATGGAGCGTGTGCTGCT
GATGATTTTGATTGCTACAGTGGAAGTGTTCAGGATCGCTTTGGCATGGA
GGCTATTGCCAGCTTGCATCGTCAGCTAGATGATGACGATAATGGAAACA
TCGATCTGAGCGAGTCCGATGACTTTTTGCGGGAGGAATTGAAGTACGAC
TCGGGCTACGAAAAGCGGCAGAAAGCGTTTCACTTCAATGACGATATGCA
TATATCGGTCAAAGAACTTTGGGAGGCCTGGCTCAGATCGGAGGTGCATA
ATTGGACCATCGAGCAGACCACCGATTGGCTGGCTCAGTCCGTTCAGCTG
CCGCAATACGTTGATCTGTTCAAATTACACAAGGTTACTGGCGCTGCCTT
GCCAAGATTGGCTGTGAATAATCTTCAGTATGTTGGCAATGTACTTGGCA
TCAAAGACCCTATACACAAACAAAAAATCTCATTGAAGGCAATGGATGTG
GTTCTGTTTGGGCCACCGCGAGAAACTGGTACCCGCTGGAAAGACTACAT
ATTGGTAACACTGTTGCTTAGTGCTATTATTGGTTGTTGGTACGCCTATC
AGCAAAATAAGAATGCCAAACGGCATCTGCGTCGAATGGCCCAGGATATG
GAGGGATTGCAGAGGGCTGAGCAAAGTCTACAGGAGATGCAGAAGGAACT
AGAACGGGCCAGAATGGAGCAGGAAAATGTGGCAACAGAAAAACTAGATT
TGGAGCGTCGTCTAAAAGAAGCGCCCACTCTCAGTTCATCGAACTCGGAT
TTGGAAGTTCAGCAGCTGAAAAAGGAAATCGAGATGTTGCGCAACGAATT
GTCCCGCGCCGAATTCGAGCTAGTAGACAACTGCTGGTCACCGCCGCCAC
AACTGCAATCATGGCTTCAATACACATATGAACTAGAAAGTAAGAATCAT
CAGAAGAAGCGCACGTCGGCTGAGAAGCAGCTACAGTCGGCCAGAGAGGC
TTGTGAGAAATTGCGTAAGAAACGGTCAAGTTTGGTGGGTGCGTTCGTTT
CCACGCACGGAAAGAGTATTGATGATGTGGATCGGTCGATTGTTGAGGCA
CGGAATGCCCTCGGAGATGTAACAAACGAGCTGCAAGAACGACTGCATCG
CTGGAAGCAAATCGAGACGTGCCTTGGCTTAAACATTGTGAACAACAATG
GTCTGCCCTACTTGGAGAATGTTCTGTACGGTCGAAATGGGGGCTTACAA
AGTTCCATGGGCATGAGTTCAACCAAGGGTTCTAGAGCACGTATTACCAA
CAGCACCGAAGACCTGGACGATGAGTCCATACAAGGTAAGCTGAATTTTG
AGAACTTTTCGCTGCTTGCCACGGAAGCAAGCTTTCTAGACCAT
BO09383.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:50:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Stim-RA | 1713 | CG9126-PA | 1..1710 | 17..1726 | 8550 | 100 | Plus |
Stim-RD | 1686 | CG9126-PD | 1..1671 | 17..1687 | 8355 | 100 | Plus |
Stim-RF | 354 | CG9126-PF | 1..345 | 17..361 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:50:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Stim-RA | 2255 | CG9126-RA | 193..1902 | 17..1726 | 8550 | 100 | Plus |
Stim-RD | 2141 | CG9126-RD | 193..1863 | 17..1687 | 8355 | 100 | Plus |
Stim-RF | 2319 | CG9126-RF | 600..1966 | 360..1726 | 6835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:50:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15935417..15936010 | 1637..1044 | 2970 | 100 | Minus |
X | 23542271 | X | 15938756..15939100 | 361..17 | 1725 | 100 | Minus |
X | 23542271 | X | 15936792..15937031 | 763..524 | 1170 | 99.2 | Minus |
X | 23542271 | X | 15936075..15936250 | 1046..871 | 880 | 100 | Minus |
X | 23542271 | X | 15937591..15937754 | 523..360 | 820 | 100 | Minus |
X | 23542271 | X | 15936319..15936436 | 872..755 | 590 | 100 | Minus |
X | 23542271 | X | 15935254..15935344 | 1726..1636 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:50:18 has no hits.
BO09383.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:05 Download gff for
BO09383.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Stim-RA | 1..1713 | 17..1730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:10:20 Download gff for
BO09383.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Stim-RA | 169..1894 | 8..1734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:00:35 Download gff for
BO09383.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Stim-RA | 193..1902 | 17..1728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:05 Download gff for
BO09383.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Stim-RA | 169..1894 | 8..1734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:27 Download gff for
BO09383.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Stim-RA | 193..1902 | 17..1728 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:27 Download gff for
BO09383.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15936799..15937031 | 524..756 | 100 | <- | Minus |
X | 15937591..15937754 | 360..523 | 100 | <- | Minus |
X | 15938758..15939100 | 17..359 | 100 | | Minus |
X | 15936319..15936434 | 757..872 | 100 | <- | Minus |
X | 15935252..15935342 | 1638..1728 | 97 | <- | Minus |
X | 15935417..15936008 | 1046..1637 | 100 | <- | Minus |
X | 15936076..15936248 | 873..1045 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:00:35 Download gff for
BO09383.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15829285..15829375 | 1638..1728 | 97 | <- | Minus |
arm_X | 15829450..15830041 | 1046..1637 | 100 | <- | Minus |
arm_X | 15830109..15830281 | 873..1045 | 100 | <- | Minus |
arm_X | 15830352..15830467 | 757..872 | 100 | <- | Minus |
arm_X | 15830832..15831064 | 524..756 | 100 | <- | Minus |
arm_X | 15831624..15831787 | 360..523 | 100 | <- | Minus |
arm_X | 15832791..15833133 | 17..359 | 100 | | Minus |
BO09383.pep Sequence
Translation from 16 to 1744
> BO09383.pep
MRKNTIWNYSLIFFCCVLKSISTLDHGPHTVSVDSNRHNTQHQYKQNPNV
ASQRHSSHESGQSLHNSQSEHVTHIAASHAGSGGEHSTHLAQNLHRSSYN
LLSEAMSQAVSNEFSSMGSGSADGACAADDFDCYSGSVQDRFGMEAIASL
HRQLDDDDNGNIDLSESDDFLREELKYDSGYEKRQKAFHFNDDMHISVKE
LWEAWLRSEVHNWTIEQTTDWLAQSVQLPQYVDLFKLHKVTGAALPRLAV
NNLQYVGNVLGIKDPIHKQKISLKAMDVVLFGPPRETGTRWKDYILVTLL
LSAIIGCWYAYQQNKNAKRHLRRMAQDMEGLQRAEQSLQEMQKELERARM
EQENVATEKLDLERRLKEAPTLSSSNSDLEVQQLKKEIEMLRNELSRAEF
ELVDNCWSPPPQLQSWLQYTYELESKNHQKKRTSAEKQLQSAREACEKLR
KKRSSLVGAFVSTHGKSIDDVDRSIVEARNALGDVTNELQERLHRWKQIE
TCLGLNIVNNNGLPYLENVLYGRNGGLQSSMGMSSTKGSRARITNSTEDL
DDESIQGKLNFENFSLLATEASFLDH
BO09383.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Stim-PA | 570 | CG9126-PA | 1..570 | 1..570 | 2971 | 100 | Plus |
Stim-PD | 561 | CG9126-PD | 1..557 | 1..557 | 2907 | 100 | Plus |
Stim-PF | 117 | CG9126-PF | 1..117 | 1..117 | 617 | 99.1 | Plus |
Stim-PG | 117 | CG9126-PG | 1..117 | 1..117 | 617 | 99.1 | Plus |