Clone Sequence Records
BO09385.3prime Sequence
958 bp (811 high quality bases) assembled on 2006-01-18
> BO09385.3prime
ATGGTCTAGAAAGCTTGCGTCCGCTGGATATCCAAAGCTGAGGTGAAGAT
TGCACCACCGCCGGTGCTTACCACCCAGGGTGGACTCCTCGCGCCGTACG
GCACTTAAAAACGGATTATCTTCAAAGTCAAAGTTGCCCAAATGCGAACG
CAGATCGCCTGACGCCACTGGTAACAGTTGGCCATTGGGCAAGCCCATTT
GCAGGCGCACGCACTGCTCCACGATGAACTTGAGTGCCGCACGGCGATGC
AGCTCGAAGCAATCCCGCGATCCGTACATCAAGCGCTGCTCGGCACACAG
ACGCATATCGTTGGCGGCAACGTTGCAGCAGTAAAGAAATGATATTAGCC
TTTGCTTGCTCACGGAACTCAGATCCACATGTGGTAGCAAGAGACCCAGC
AGATCCTCAGCGTTGGCTTCACATTCCAGGCCATAGCTTGTCATTAGATG
CTGCAGACTGGCCAACGTAGACGAACCACTGGCTCCGGAATCCTTGGGAA
GGGCAAAACTGAGCTCATATGCACGACTCAGGAGCACTTGGCGGTAGTGG
TAGCAGCTGTAGTCACTGATGTGCTTCCGCATAAACTTCTCCGTGCGTAG
CAGTTCCGATTGCAGCAGGCATGGGCCGTTCTGAAGGATCCACTGGCGGT
GCGACCAGGCGTGATAGTTGCTGGCGCATCTATCGGCGGCCCTTTCGCAT
ATCCCGATCTCATTGGGCCAGTCAATAGCATCGGCACTTTGAAATGAGTA
CAGCCAACGGCGGTAGGCGAATGCTTCATTGGACTTCGGTTTGATTGAGA
GCACGAGTGCGGAGAACTGCAGCTCCTTGTTGATGCTCAGCCGATTCTTT
TGCACCAGCTGACGGCGGATGTGCCAAAAGGTGGTCACATCGGGGATAAT
CAGCAGAGCCACGNTTAGGGTATTTGGCCAGGGAGTCGCTCTGCTGCTGC
TGCTGCAG
BO09385.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3073-PA | 1197 | l(1)G0144-RA | 294..1194 | 919..19 | 4436 | 99.6 | Minus |
CG3073-PA | 1197 | l(1)G0144-RA | 256..295 | 958..919 | 200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:07:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
temp-RB | 1791 | CG3073-RB | 363..1301 | 958..19 | 4634 | 99.6 | Minus |
temp-RA | 2163 | CG3073-RA | 735..1673 | 958..19 | 4634 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:07:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2260697..2261423 | 19..745 | 3605 | 99.7 | Plus |
X | 23542271 | X | 2261464..2261685 | 736..958 | 1024 | 98.2 | Plus |
Blast to na_te.dros performed 2015-02-11 23:07:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G6 | 2042 | G6 G6_DM 2042bp | 646..709 | 933..871 | 121 | 67.2 | Minus |
BO09385.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:21 Download gff for
BO09385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3073-PA | 256..1197 | 18..958 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:42 Download gff for
BO09385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3073-PA | 256..1197 | 18..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:32:17 Download gff for
BO09385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0144-RA | 735..1673 | 19..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:35:13 Download gff for
BO09385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
temp-RA | 735..1673 | 19..958 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:35:13 Download gff for
BO09385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2261466..2261685 | 738..958 | 98 | | Plus |
X | 2260697..2261415 | 19..737 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:32:17 Download gff for
BO09385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2154730..2155448 | 19..737 | 100 | <- | Plus |
arm_X | 2155499..2155718 | 738..958 | 98 | | Plus |
BO09385.5prime Sequence
940 bp (820 high quality bases) assembled on 2006-01-18
> BO09385.5prime
GAAGTTATCAGTCGACATGGAGGAGGAACGCAACGAGAAAAAGGTGCTCT
GCGAGAAGATCATCAGGGACATCAATGCGGTGTTCCTCAAGGATCAGGAT
CTCGCCTCCTTTGAAATTATACCCAAAGAAGCCAACTGCAACAAATCGCC
GGTTGTGCATGTGGAGCACAATCTGGGCCTGGAATCGTGGTGTGCCCAGC
ATGTCTACGACCACGCCCACCGCACCCTCATCTCCCATCGCCGTCAAACC
ACGGCGCAACAGCTGCGGACGCTGCAGCAGCAGCAGCAGAGCGACTCCCT
GGCCAAATACCTAAACGTGGCTCTGCTGATTAATCCCGATGTGACCACCT
TTTGGCACATCCGCCGTCAGCTGGTGCAAAAGAATCGGCTGAGCATCAAC
AAGGAGCTGCAGTTCTCCGCACTCGTGCTCTCAATCAAACCGAAGTCCAA
TGAAGCATTCGCCTACCGCCGTTGGCTGTACTCATTTCAAAGTGCCGATG
CTATTGACTGGCCCAATGAGATCGGGATATGCGAAAGGGCCGCCGATAGA
TGCGCCAGCAACTATCACGCCTGGTCGCACCGCCAGTGGATCCTTCAGAA
CGGCCCATGCCTGCTGCAATCGGAACTGCTACGCACGGAGAAGTTTATGC
GGAAGCACATCAGTGACTACAGCTGCTACCACTACCGCCAAGTGCTCCTG
AGTCGTGCATATGAGCTCAGTTTTGCCCTTCCCAAGGATTCCGGAGCCAG
TGGTTCGTCTACGTTGGCCAGTCTGCAGCATCTAATGACAAGCTATGGCC
TGGAATGTGAAGCCAACGCTGAGGATCTGCTGGGTCTCTTGCTACCACAT
GTGGATCTGAGTTCCGTGAGCAAGCAAAGGCTAATATCATTTCTTTACTG
CTGCAACGTTGCCGCCAACGATATGCGTCTGTGTGCCGAG
BO09385.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3073-PA | 1197 | l(1)G0144-RA | 1..924 | 17..940 | 4620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:17:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
temp-RB | 1791 | CG3073-RB | 107..1031 | 16..940 | 4625 | 100 | Plus |
temp-RA | 2163 | CG3073-RA | 479..1403 | 16..940 | 4625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:16:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2260967..2261423 | 940..484 | 2255 | 99.6 | Minus |
X | 23542271 | X | 2261464..2261854 | 493..103 | 1955 | 100 | Minus |
X | 23542271 | X | 2261951..2262037 | 102..16 | 435 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 20:17:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 121..198 | 216..291 | 113 | 67.1 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9151..9228 | 216..291 | 113 | 67.1 | Plus |
BO09385.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:22 Download gff for
BO09385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3073-PA | 1..924 | 17..940 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:43 Download gff for
BO09385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3073-PA | 1..924 | 17..940 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:25:55 Download gff for
BO09385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0144-RA | 477..1403 | 12..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:36:53 Download gff for
BO09385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
temp-RA | 477..1403 | 12..940 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:36:53 Download gff for
BO09385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2260967..2261415 | 492..940 | 100 | <- | Minus |
X | 2261466..2261854 | 103..491 | 100 | <- | Minus |
X | 2261951..2262039 | 12..102 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:25:55 Download gff for
BO09385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2155000..2155448 | 492..940 | 100 | <- | Minus |
arm_X | 2155499..2155887 | 103..491 | 100 | <- | Minus |
arm_X | 2155984..2156072 | 12..102 | 97 | | Minus |
BO09385.complete Sequence
1228 bp (1228 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631491
> BO09385.complete
GAAGTTATCAGTCGACATGGAGGAGGAACGCAACGAGAAAAAGGTGCTCT
GCGAGAAGATCATCAGGGACATCAATGCGGTGTTCCTCAAGGATCAGGAT
CTCGCCTCCTTTGAAATTATACCCAAAGAAGCCAACTGCAACAAATCGCC
GGTTGTGCATGTGGAGCACAATCTGGGCCTGGAATCGTGGTGTGCCCAGC
ATGTCTACGACCACGCCCACCGCACCCTCATCTCCCATCGCCGTCAAACC
ACGGCGCAACAGCTGCGGACGCTGCAGCAGCAGCAGCAGAGCGACTCCCT
GGCCAAATACCTAAACGTGGCTCTGCTGATTAATCCCGATGTGACCACCT
TTTGGCACATCCGCCGTCAGCTGGTGCAAAAGAATCGGCTGAGCATCAAC
AAGGAGCTGCAGTTCTCCGCACTCGTGCTCTCAATCAAACCGAAGTCCAA
TGAAGCATTCGCCTACCGCCGTTGGCTGTACTCATTTCAAAGTGCCGATG
CTATTGACTGGCCCAATGAGATCGGGATATGCGAAAGGGCCGCCGATAGA
TGCGCCAGCAACTATCACGCCTGGTCGCACCGCCAGTGGATCCTTCAGAA
CGGCCCATGCCTGCTGCAATCGGAACTGCTACGCACGGAGAAGTTTATGC
GGAAGCACATCAGTGACTACAGCTGCTACCACTACCGCCAAGTGCTCCTG
AGTCGTGCATATGAGCTCAGTTTTGCCCTTCCCAAGGATTCCGGAGCCAG
TGGTTCGTCTACGTTGGCCAGTCTGCAGCATCTAATGACAAGCTATGGCC
TGGAATGTGAAGCCAACGCTGAGGATCTGCTGGGTCTCTTGCTACCACAT
GTGGATCTGAGTTCCGTGAGCAAGCAAAGGCTAATATCATTTCTTTACTG
CTGCAACGTTGCCGCCAACGATATGCGTCTGTGTGCCGAGCAGCGCTTGA
TGTACGGATCGCGGGATTGCTTCGAGCTGCATCGCCGTGCGGCACTCAAG
TTCATCGTGGAGCAGTGCGTGCGCCTGCAAATGGGCTTGCCCAATGGCCA
ACTGTTACCAGTGGCGTCAGGCGATCTGCGTTCGCATTTGGGCAACTTTG
ACTTTGAAGATAATCCGTTTTTAAGTGCCGTACGGCGCGAGGAGTCCACC
CTGGGTGGTAAGCACCGGCGGTGGTGCAATCTTCACCTCAGCTTTGGATA
TCCAGCGGACGCAAGCTTTCTAGACCAT
BO09385.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:42:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
temp-RB | 1197 | CG3073-PB | 1..1194 | 17..1210 | 5970 | 100 | Plus |
temp-RA | 1197 | CG3073-PA | 1..1194 | 17..1210 | 5970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:42:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
temp-RB | 1791 | CG3073-RB | 107..1301 | 16..1210 | 5975 | 100 | Plus |
temp-RA | 2163 | CG3073-RA | 479..1673 | 16..1210 | 5975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:42:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2260697..2261423 | 1210..484 | 3605 | 99.7 | Minus |
X | 23542271 | X | 2261464..2261854 | 493..103 | 1955 | 100 | Minus |
X | 23542271 | X | 2261951..2262037 | 102..16 | 435 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 16:42:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 121..198 | 216..291 | 113 | 67.1 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9151..9228 | 216..291 | 113 | 67.1 | Plus |
BO09385.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:35 Download gff for
BO09385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0144-RA | 1..1197 | 17..1211 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:08 Download gff for
BO09385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0144-RA | 489..1685 | 12..1210 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:02 Download gff for
BO09385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0144-RA | 480..1673 | 17..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:35 Download gff for
BO09385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0144-RA | 489..1685 | 12..1210 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:48 Download gff for
BO09385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
temp-RA | 480..1673 | 17..1212 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:48 Download gff for
BO09385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2260695..2261415 | 492..1212 | 99 | <- | Minus |
X | 2261466..2261854 | 103..491 | 100 | <- | Minus |
X | 2261951..2262036 | 17..102 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:02 Download gff for
BO09385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2154728..2155448 | 492..1212 | 99 | <- | Minus |
arm_X | 2155499..2155887 | 103..491 | 100 | <- | Minus |
arm_X | 2155984..2156069 | 17..102 | 100 | | Minus |
BO09385.pep Sequence
Translation from 16 to 1228
> BO09385.pep
MEEERNEKKVLCEKIIRDINAVFLKDQDLASFEIIPKEANCNKSPVVHVE
HNLGLESWCAQHVYDHAHRTLISHRRQTTAQQLRTLQQQQQSDSLAKYLN
VALLINPDVTTFWHIRRQLVQKNRLSINKELQFSALVLSIKPKSNEAFAY
RRWLYSFQSADAIDWPNEIGICERAADRCASNYHAWSHRQWILQNGPCLL
QSELLRTEKFMRKHISDYSCYHYRQVLLSRAYELSFALPKDSGASGSSTL
ASLQHLMTSYGLECEANAEDLLGLLLPHVDLSSVSKQRLISFLYCCNVAA
NDMRLCAEQRLMYGSRDCFELHRRAALKFIVEQCVRLQMGLPNGQLLPVA
SGDLRSHLGNFDFEDNPFLSAVRREESTLGGKHRRWCNLHLSFGYPADAS
FLDH
BO09385.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
temp-PB | 398 | CG3073-PB | 1..398 | 1..398 | 2104 | 100 | Plus |
temp-PA | 398 | CG3073-PA | 1..398 | 1..398 | 2104 | 100 | Plus |