Clone BO09385 Report

Search the DGRC for BO09385

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:93
Well:85
Vector:pDNR-Dual
Associated Gene/Transcriptl(1)G0144-RA
Protein status:BO09385.pep: validated full length
Sequenced Size:1228

Clone Sequence Records

BO09385.3prime Sequence

958 bp (811 high quality bases) assembled on 2006-01-18

> BO09385.3prime
ATGGTCTAGAAAGCTTGCGTCCGCTGGATATCCAAAGCTGAGGTGAAGAT
TGCACCACCGCCGGTGCTTACCACCCAGGGTGGACTCCTCGCGCCGTACG
GCACTTAAAAACGGATTATCTTCAAAGTCAAAGTTGCCCAAATGCGAACG
CAGATCGCCTGACGCCACTGGTAACAGTTGGCCATTGGGCAAGCCCATTT
GCAGGCGCACGCACTGCTCCACGATGAACTTGAGTGCCGCACGGCGATGC
AGCTCGAAGCAATCCCGCGATCCGTACATCAAGCGCTGCTCGGCACACAG
ACGCATATCGTTGGCGGCAACGTTGCAGCAGTAAAGAAATGATATTAGCC
TTTGCTTGCTCACGGAACTCAGATCCACATGTGGTAGCAAGAGACCCAGC
AGATCCTCAGCGTTGGCTTCACATTCCAGGCCATAGCTTGTCATTAGATG
CTGCAGACTGGCCAACGTAGACGAACCACTGGCTCCGGAATCCTTGGGAA
GGGCAAAACTGAGCTCATATGCACGACTCAGGAGCACTTGGCGGTAGTGG
TAGCAGCTGTAGTCACTGATGTGCTTCCGCATAAACTTCTCCGTGCGTAG
CAGTTCCGATTGCAGCAGGCATGGGCCGTTCTGAAGGATCCACTGGCGGT
GCGACCAGGCGTGATAGTTGCTGGCGCATCTATCGGCGGCCCTTTCGCAT
ATCCCGATCTCATTGGGCCAGTCAATAGCATCGGCACTTTGAAATGAGTA
CAGCCAACGGCGGTAGGCGAATGCTTCATTGGACTTCGGTTTGATTGAGA
GCACGAGTGCGGAGAACTGCAGCTCCTTGTTGATGCTCAGCCGATTCTTT
TGCACCAGCTGACGGCGGATGTGCCAAAAGGTGGTCACATCGGGGATAAT
CAGCAGAGCCACGNTTAGGGTATTTGGCCAGGGAGTCGCTCTGCTGCTGC
TGCTGCAG

BO09385.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3073-PA 1197 l(1)G0144-RA 294..1194 919..19 4436 99.6 Minus
CG3073-PA 1197 l(1)G0144-RA 256..295 958..919 200 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
temp-RB 1791 CG3073-RB 363..1301 958..19 4634 99.6 Minus
temp-RA 2163 CG3073-RA 735..1673 958..19 4634 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2260697..2261423 19..745 3605 99.7 Plus
X 23542271 X 2261464..2261685 736..958 1024 98.2 Plus
Blast to na_te.dros performed 2015-02-11 23:07:38
Subject Length Description Subject Range Query Range Score Percent Strand
G6 2042 G6 G6_DM 2042bp 646..709 933..871 121 67.2 Minus

BO09385.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:21 Download gff for BO09385.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3073-PA 256..1197 18..958 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:42 Download gff for BO09385.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3073-PA 256..1197 18..958 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:32:17 Download gff for BO09385.3prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0144-RA 735..1673 19..958 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:35:13 Download gff for BO09385.3prime
Subject Subject Range Query Range Percent Splice Strand
temp-RA 735..1673 19..958 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:35:13 Download gff for BO09385.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2261466..2261685 738..958 98   Plus
X 2260697..2261415 19..737 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:32:17 Download gff for BO09385.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2154730..2155448 19..737 100 <- Plus
arm_X 2155499..2155718 738..958 98   Plus

BO09385.5prime Sequence

940 bp (820 high quality bases) assembled on 2006-01-18

> BO09385.5prime
GAAGTTATCAGTCGACATGGAGGAGGAACGCAACGAGAAAAAGGTGCTCT
GCGAGAAGATCATCAGGGACATCAATGCGGTGTTCCTCAAGGATCAGGAT
CTCGCCTCCTTTGAAATTATACCCAAAGAAGCCAACTGCAACAAATCGCC
GGTTGTGCATGTGGAGCACAATCTGGGCCTGGAATCGTGGTGTGCCCAGC
ATGTCTACGACCACGCCCACCGCACCCTCATCTCCCATCGCCGTCAAACC
ACGGCGCAACAGCTGCGGACGCTGCAGCAGCAGCAGCAGAGCGACTCCCT
GGCCAAATACCTAAACGTGGCTCTGCTGATTAATCCCGATGTGACCACCT
TTTGGCACATCCGCCGTCAGCTGGTGCAAAAGAATCGGCTGAGCATCAAC
AAGGAGCTGCAGTTCTCCGCACTCGTGCTCTCAATCAAACCGAAGTCCAA
TGAAGCATTCGCCTACCGCCGTTGGCTGTACTCATTTCAAAGTGCCGATG
CTATTGACTGGCCCAATGAGATCGGGATATGCGAAAGGGCCGCCGATAGA
TGCGCCAGCAACTATCACGCCTGGTCGCACCGCCAGTGGATCCTTCAGAA
CGGCCCATGCCTGCTGCAATCGGAACTGCTACGCACGGAGAAGTTTATGC
GGAAGCACATCAGTGACTACAGCTGCTACCACTACCGCCAAGTGCTCCTG
AGTCGTGCATATGAGCTCAGTTTTGCCCTTCCCAAGGATTCCGGAGCCAG
TGGTTCGTCTACGTTGGCCAGTCTGCAGCATCTAATGACAAGCTATGGCC
TGGAATGTGAAGCCAACGCTGAGGATCTGCTGGGTCTCTTGCTACCACAT
GTGGATCTGAGTTCCGTGAGCAAGCAAAGGCTAATATCATTTCTTTACTG
CTGCAACGTTGCCGCCAACGATATGCGTCTGTGTGCCGAG

BO09385.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3073-PA 1197 l(1)G0144-RA 1..924 17..940 4620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:17:04
Subject Length Description Subject Range Query Range Score Percent Strand
temp-RB 1791 CG3073-RB 107..1031 16..940 4625 100 Plus
temp-RA 2163 CG3073-RA 479..1403 16..940 4625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:16:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2260967..2261423 940..484 2255 99.6 Minus
X 23542271 X 2261464..2261854 493..103 1955 100 Minus
X 23542271 X 2261951..2262037 102..16 435 100 Minus
Blast to na_te.dros performed 2015-02-12 20:17:01
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 121..198 216..291 113 67.1 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9151..9228 216..291 113 67.1 Plus

BO09385.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:22 Download gff for BO09385.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3073-PA 1..924 17..940 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:43 Download gff for BO09385.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3073-PA 1..924 17..940 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:25:55 Download gff for BO09385.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0144-RA 477..1403 12..940 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:36:53 Download gff for BO09385.5prime
Subject Subject Range Query Range Percent Splice Strand
temp-RA 477..1403 12..940 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:36:53 Download gff for BO09385.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2260967..2261415 492..940 100 <- Minus
X 2261466..2261854 103..491 100 <- Minus
X 2261951..2262039 12..102 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:25:55 Download gff for BO09385.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2155000..2155448 492..940 100 <- Minus
arm_X 2155499..2155887 103..491 100 <- Minus
arm_X 2155984..2156072 12..102 97   Minus

BO09385.complete Sequence

1228 bp (1228 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631491

> BO09385.complete
GAAGTTATCAGTCGACATGGAGGAGGAACGCAACGAGAAAAAGGTGCTCT
GCGAGAAGATCATCAGGGACATCAATGCGGTGTTCCTCAAGGATCAGGAT
CTCGCCTCCTTTGAAATTATACCCAAAGAAGCCAACTGCAACAAATCGCC
GGTTGTGCATGTGGAGCACAATCTGGGCCTGGAATCGTGGTGTGCCCAGC
ATGTCTACGACCACGCCCACCGCACCCTCATCTCCCATCGCCGTCAAACC
ACGGCGCAACAGCTGCGGACGCTGCAGCAGCAGCAGCAGAGCGACTCCCT
GGCCAAATACCTAAACGTGGCTCTGCTGATTAATCCCGATGTGACCACCT
TTTGGCACATCCGCCGTCAGCTGGTGCAAAAGAATCGGCTGAGCATCAAC
AAGGAGCTGCAGTTCTCCGCACTCGTGCTCTCAATCAAACCGAAGTCCAA
TGAAGCATTCGCCTACCGCCGTTGGCTGTACTCATTTCAAAGTGCCGATG
CTATTGACTGGCCCAATGAGATCGGGATATGCGAAAGGGCCGCCGATAGA
TGCGCCAGCAACTATCACGCCTGGTCGCACCGCCAGTGGATCCTTCAGAA
CGGCCCATGCCTGCTGCAATCGGAACTGCTACGCACGGAGAAGTTTATGC
GGAAGCACATCAGTGACTACAGCTGCTACCACTACCGCCAAGTGCTCCTG
AGTCGTGCATATGAGCTCAGTTTTGCCCTTCCCAAGGATTCCGGAGCCAG
TGGTTCGTCTACGTTGGCCAGTCTGCAGCATCTAATGACAAGCTATGGCC
TGGAATGTGAAGCCAACGCTGAGGATCTGCTGGGTCTCTTGCTACCACAT
GTGGATCTGAGTTCCGTGAGCAAGCAAAGGCTAATATCATTTCTTTACTG
CTGCAACGTTGCCGCCAACGATATGCGTCTGTGTGCCGAGCAGCGCTTGA
TGTACGGATCGCGGGATTGCTTCGAGCTGCATCGCCGTGCGGCACTCAAG
TTCATCGTGGAGCAGTGCGTGCGCCTGCAAATGGGCTTGCCCAATGGCCA
ACTGTTACCAGTGGCGTCAGGCGATCTGCGTTCGCATTTGGGCAACTTTG
ACTTTGAAGATAATCCGTTTTTAAGTGCCGTACGGCGCGAGGAGTCCACC
CTGGGTGGTAAGCACCGGCGGTGGTGCAATCTTCACCTCAGCTTTGGATA
TCCAGCGGACGCAAGCTTTCTAGACCAT

BO09385.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
temp-RB 1197 CG3073-PB 1..1194 17..1210 5970 100 Plus
temp-RA 1197 CG3073-PA 1..1194 17..1210 5970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:42:14
Subject Length Description Subject Range Query Range Score Percent Strand
temp-RB 1791 CG3073-RB 107..1301 16..1210 5975 100 Plus
temp-RA 2163 CG3073-RA 479..1673 16..1210 5975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2260697..2261423 1210..484 3605 99.7 Minus
X 23542271 X 2261464..2261854 493..103 1955 100 Minus
X 23542271 X 2261951..2262037 102..16 435 100 Minus
Blast to na_te.dros performed 2014-11-27 16:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 121..198 216..291 113 67.1 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9151..9228 216..291 113 67.1 Plus

BO09385.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:35 Download gff for BO09385.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0144-RA 1..1197 17..1211 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:08 Download gff for BO09385.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0144-RA 489..1685 12..1210 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:02 Download gff for BO09385.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0144-RA 480..1673 17..1212 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:35 Download gff for BO09385.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0144-RA 489..1685 12..1210 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:48 Download gff for BO09385.complete
Subject Subject Range Query Range Percent Splice Strand
temp-RA 480..1673 17..1212 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:48 Download gff for BO09385.complete
Subject Subject Range Query Range Percent Splice Strand
X 2260695..2261415 492..1212 99 <- Minus
X 2261466..2261854 103..491 100 <- Minus
X 2261951..2262036 17..102 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:02 Download gff for BO09385.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2154728..2155448 492..1212 99 <- Minus
arm_X 2155499..2155887 103..491 100 <- Minus
arm_X 2155984..2156069 17..102 100   Minus

BO09385.pep Sequence

Translation from 16 to 1228

> BO09385.pep
MEEERNEKKVLCEKIIRDINAVFLKDQDLASFEIIPKEANCNKSPVVHVE
HNLGLESWCAQHVYDHAHRTLISHRRQTTAQQLRTLQQQQQSDSLAKYLN
VALLINPDVTTFWHIRRQLVQKNRLSINKELQFSALVLSIKPKSNEAFAY
RRWLYSFQSADAIDWPNEIGICERAADRCASNYHAWSHRQWILQNGPCLL
QSELLRTEKFMRKHISDYSCYHYRQVLLSRAYELSFALPKDSGASGSSTL
ASLQHLMTSYGLECEANAEDLLGLLLPHVDLSSVSKQRLISFLYCCNVAA
NDMRLCAEQRLMYGSRDCFELHRRAALKFIVEQCVRLQMGLPNGQLLPVA
SGDLRSHLGNFDFEDNPFLSAVRREESTLGGKHRRWCNLHLSFGYPADAS
FLDH

BO09385.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
temp-PB 398 CG3073-PB 1..398 1..398 2104 100 Plus
temp-PA 398 CG3073-PA 1..398 1..398 2104 100 Plus