Clone Sequence Records
BO09387.3prime Sequence
956 bp (835 high quality bases) assembled on 2006-01-18
> BO09387.3prime
ATGGTCTAGAAAGCTTGCACGCATAAACTTCTTGGCCTGGTCGCGGTTGA
CCTGCTTGAAGTGCCGCTGCTTGGAAGCCGATCCCTCGTTCATTTTCTTG
TAGAATCCGAAACCGCCGCCGCCCACTCGCTTTTCCGGTCGCTCCCGCTT
GGCCGCGCCCACCTTCAGGTCAACTACGGGTGGCACAAGGAATCCAAAGC
TTTTCGCAACCGCCTGCAGGTCCAACGTGTTCACATTGAAGATCTGCTTC
AATTGATGCGAATCGTATGCGCGCACATACGACTTAAAGGCTTCCTTGGC
CGACTGGTTTAGGAAATAGTTCTTGGCGATCAGTTTCTCCAGCTGCAGTT
GAATATCAGCTATCTTCTGCCAGGAGAACTCGAACTCATTGAGCGGCACC
TTGGCGGCCTTAAGGTAGCGCAGGAAGCCCAGCTCCTCCGGTCGCATCAG
AAGGAGGGCGTGACCCGAGGTGCCCGATCCTCTGGCCGTTCGGCCCACCC
TGTGAATATACTCGCGTGGATCATCTGGAGGATCGTACTGCACAATCCAA
TCGACTTGCGGAATGTCCAATCCACGAGCAGCCACATCCGTACATAAGAG
AATCCCAGATTCCGCGTTGCAGAACTGGAAGAAGGTGGTCGTTCGTTTCG
TTTGCTTTTGTTTACCGTGGATGGAGGTCACTGGCAGATCAATGTAGTTG
AAGAGCTCGTGGTGGTATTTGACGGACATGCAGGACGAGAAGAACACCAT
CACCTTCTTCTTACGATTCTTTTTGAGGAACGTGAAGAGCACGAGCAGTC
GCTTCTCCGAGGGGCAAACAATGTACCCCTGCTCGAGTCCATCTACGGTC
GCCGTGTCCTGGTTGTCGTGAACCCCTACATAAATTGGTTTCGACTTAAG
GCCCAGCTTGAAAAGCGCTTCGATGCGAGCCGTCTGTGTGGCCGAGAAGA
GCATCG
BO09387.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6375-PA | 2043 | pit-RA | 1103..2040 | 956..19 | 4615 | 99.6 | Minus |
| CG6375-PB | 2043 | pit-RB | 1103..2040 | 956..19 | 4615 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:03:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pit-RC | 2803 | CG6375-RC | 1221..2158 | 956..19 | 4645 | 99.7 | Minus |
| pit-RA | 2270 | CG6375-RA | 1221..2158 | 956..19 | 4645 | 99.7 | Minus |
| pit-RB | 2324 | CG6375-RB | 1275..2212 | 956..19 | 4645 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:03:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22037264..22037881 | 956..339 | 3030 | 99.4 | Minus |
| 3R | 32079331 | 3R | 22037950..22038280 | 349..19 | 1655 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:03:51 has no hits.
BO09387.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:26 Download gff for
BO09387.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pit-PB | 1103..2043 | 18..956 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:48 Download gff for
BO09387.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6375-PB | 1103..2043 | 18..956 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:33:18 Download gff for
BO09387.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pit-RA | 1221..2164 | 10..956 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:46:52 Download gff for
BO09387.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pit-RB | 1275..2218 | 10..956 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:46:52 Download gff for
BO09387.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22037264..22037877 | 343..956 | 99 | -> | Minus |
| 3R | 22037957..22038286 | 10..342 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:33:18 Download gff for
BO09387.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17862986..17863599 | 343..956 | 99 | -> | Minus |
| arm_3R | 17863679..17864008 | 10..342 | 98 | | Minus |
BO09387.5prime Sequence
833 bp (771 high quality bases) assembled on 2006-01-18
> BO09387.5prime
GAAGTTATCAGTCGACATGTCTATTCGGGAGAAGCTGCTGATGAAGAAGA
TCGTTAAGCGGGAGAAGATGAAGAAGGAGCTCTCGCAGAAGAAGGGAAAC
AAGAACGCCCAAAAGCAGGAGCCACCCAAACAAAATGGCAATAAACCCAG
TAAAAAACCGGAGAAACTCAGTAAAAAGCATGTGGCCAAGGATGAGGATG
ACGACTTAGAGGAGGATTTCCAGGAGGCGCCGCTGCCCAAGAAGAAGCAA
CAAAAACAGCCTCCAAAAAAGCAACAAATTCAGGTGGCCAACTCGGATTC
GGAATCAGATGACGATGAGCAGGAGGATGAGGCAGATGAGGATAGCGATT
TGGACGAAGTAGCCGAAGTTGATGAGGAGGATGTTGACAGCGGGAGTGAA
GATGATGACCAGCAGGAAGATGAAGATGAAGAAGAACCTGTGCCAGCCAA
GAAAACGAAGTTGCTTCCCAACAAGTCCAAGGCACAGAATGGCAAACCAG
CTAAAGACGACGAGCCCTTTACCGTGGAATCCTCACTGGCTGCACTGGAT
TACCGAGATTCGGATGATCGCAGCTTTGCCTCTTTAAAGGGCGCCGTGTC
CGAGGCCACATTGCGAGCCATTAAGGAGATGGGTTTTACCGAGATGACTG
AAATTCAGTCGAAATCGCTGACACCCCTACTAAAGGGACGGGATCTGGTG
GGTGCTGCCCAGACGGGTTCCGGCAAAACCCTGGCCTTCCTGATACCCGC
CGTCGAGCTGATAAACAAGCTGAGGTTTATGCCACGCAATGGTACCGGCG
TGATCATCATCTCACCTACCCGAGAGTTGTCCA
BO09387.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6375-PA | 2043 | pit-RA | 1..817 | 17..833 | 4085 | 100 | Plus |
| CG6375-PB | 2043 | pit-RB | 1..817 | 17..833 | 4085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:35:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pit-RC | 2803 | CG6375-RC | 119..935 | 17..833 | 4085 | 100 | Plus |
| pit-RA | 2270 | CG6375-RA | 119..935 | 17..833 | 4085 | 100 | Plus |
| pit-RB | 2324 | CG6375-RB | 173..989 | 17..833 | 4085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:35:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22036505..22036920 | 418..833 | 2080 | 100 | Plus |
| 3R | 32079331 | 3R | 22036075..22036297 | 197..419 | 1115 | 100 | Plus |
| 3R | 32079331 | 3R | 22035835..22036015 | 17..197 | 905 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 09:35:45 has no hits.
BO09387.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:27 Download gff for
BO09387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pit-PB | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:49 Download gff for
BO09387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6375-PB | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:24:10 Download gff for
BO09387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pit-RA | 113..934 | 10..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:32:12 Download gff for
BO09387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pit-RB | 167..988 | 10..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:32:12 Download gff for
BO09387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22035829..22036015 | 10..197 | 98 | -> | Plus |
| 3R | 22036076..22036297 | 198..419 | 100 | -> | Plus |
| 3R | 22036507..22036919 | 420..832 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:24:10 Download gff for
BO09387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17861798..17862019 | 198..419 | 100 | -> | Plus |
| arm_3R | 17862229..17862641 | 420..832 | 100 | | Plus |
| arm_3R | 17861551..17861737 | 10..197 | 98 | -> | Plus |
BO09387.complete Sequence
2074 bp assembled on 2007-11-02
GenBank Submission: FJ631492
> BO09387.complete
GAAGTTATCAGTCGACATGTCTATTCGGGAGAAGCTGCTGATGAAGAAGA
TCGTTAAGCGGGAGAAGATGAAGAAGGAGCTCTCGCAGAAGAAGGGAAAC
AAGAACGCCCAAAAGCAGGAGCCACCCAAACAAAATGGCAATAAACCCAG
TAAAAAACCGGAGAAACTCAGTAAAAAGCATGTGGCCAAGGATGAGGATG
ACGACTTAGAGGAGGATTTCCAGGAGGCGCCGCTGCCCAAGAAGAAGCAA
CAAAAACAGCCTCCAAAAAAGCAACAAATTCAGGTGGCCAACTCGGATTC
GGAATCAGATGACGATGAGCAGGAGGATGAGGCAGATGAGGATAGCGATT
TGGACGAAGTAGCCGAAGTTGATGAGGAGGATGTTGACAGCGGGAGTGAA
GATGATGACCAGCAGGAAGATGAAGATGAAGAAGAACCTGTGCCAGCCAA
GAAAACGAAGTTGCTTCCCAACAAGTCCAAGGCACAGAATGGCAAACCAG
CTAAAGACGACGAGCCCTTTACCGTGGAATCCTCACTGGCTGCACTGGAT
TACCGAGATTCGGATGATCGCAGCTTTGCCTCTTTAAAGGGCGCCGTGTC
CGAGGCCACATTGCGAGCCATTAAGGAGATGGGTTTTACCGAGATGACTG
AAATTCAGTCGAAATCGCTGACACCCCTACTAAAGGGACGGGATCTGGTG
GGTGCTGCCCAGACGGGTTCCGGCAAAACCCTGGCCTTCCTGATACCCGC
CGTCGAGCTGATAAACAAGCTGAGGTTTATGCCACGCAATGGTACCGGCG
TGATCATCATCTCACCTACCCGAGAGTTGTCCATGCAAACTTTCGGTGTG
CTCAAAGAGCTGATGGCACACCACCATCACACTTATGGCTTGGTAATGGG
CGGCTCCAATCGGCAGGTGGAGAGCGAGAAGTTGGGCAAGGGCATCAACA
TTCTGGTGGCCACACCGGGTCGTCTGCTGGATCATTTACAAAACTCGCCC
GACTTTCTGTACAAGAACCTTCAGTGCCTGATTATCGATGAAGTGGATCG
AATTCTGGAGATCGGTTTTGAGGAGGAGCTTAAGCAAATAATAAATCTGC
TGCCAAAACGCCGCCAGACGATGCTCTTCTCGGCCACACAGACGGCTCGC
ATCGAAGCGCTTTCCAAGCTGGCCCTTAAGTCGGAACCAATTTATGTAGG
GGTTCACGACAACCAGGACACGGCGACCGTAGATGGACTCGAGCAGGGGT
ACATTGTTTGCCCCTCGGAGAAGCGACTGCTCGTGCTCTTCACGTTCCTC
AAAAAGAATCGTAAGAAGAAGGTGATGGTGTTCTTCTCGTCCTGCATGTC
CGTCAAATACCACCACGAGCTCTTCAACTACATTGATCTGCCAGTGACCT
CCATCCACGGTAAACAAAAGCAAACGAAACGAACGACCACCTTCTTCCAG
TTCTGCAACGCGGAATCTGGGATTCTCTTATGTACGGATGTGGCTGCTCG
TGGATTGGACATTCCGCAAGTCGATTGGATTGTGCAGTACGATCCTCCAG
ATGATCCACGCGAGTATATTCACAGGGTGGGCCGAACGGCCAGAGGATCG
GGCACCTCGGGTCACGCCCTCCTTCTGATGCGACCGGAGGAGCTGGGCTT
CCTGCGCTACCTTAAGGCCGCCAAGGTGCCGCTCAATGAGTTCGAGTTCT
CCTGGCAGAAGATAGCTGATATTCAACTGCAGCTGGAGAAACTGATCGCC
AAGAACTATTTCCTAAACCAGTCGGCCAAGGAAGCCTTTAAGTCGTATGT
GCGCGCATACGATTCGCATCAATTGAAGCAGATCTTCAATGTGAACACGT
TGGACCTGCAGGCGGTTGCGAAAAGCTTTGGATTCCTTGTGCCACCCGTA
GTTGACCTGAAGGTGGGCGCGGCCAAGCGGGAGCGACCGGAAAAGCGAGT
GGGCGGCGGCGGTTTCGGATTCTACAAGAAAATGAACGAGGGATCGGCTT
CCAAGCAGCGGCACTTCAAGCAGGTCAACCGCGACCAGGCCAAGAAGTTT
ATGCGTGCAAGCTTTCTAGACCAT
BO09387.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:47:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pit-RC | 2043 | CG6375-PC | 1..2040 | 17..2056 | 10200 | 100 | Plus |
| pit-RA | 2043 | CG6375-PA | 1..2040 | 17..2056 | 10200 | 100 | Plus |
| pit-RB | 2043 | CG6375-PB | 1..2040 | 17..2056 | 10200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:47:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pit-RC | 2803 | CG6375-RC | 119..2158 | 17..2056 | 10200 | 100 | Plus |
| pit-RA | 2270 | CG6375-RA | 119..2158 | 17..2056 | 10200 | 100 | Plus |
| pit-RB | 2324 | CG6375-RB | 173..2212 | 17..2056 | 10200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:47:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22036505..22037193 | 418..1106 | 3445 | 100 | Plus |
| 3R | 32079331 | 3R | 22037252..22037881 | 1107..1736 | 3135 | 99.8 | Plus |
| 3R | 32079331 | 3R | 22037950..22038280 | 1726..2056 | 1655 | 100 | Plus |
| 3R | 32079331 | 3R | 22036075..22036297 | 197..419 | 1115 | 100 | Plus |
| 3R | 32079331 | 3R | 22035835..22036015 | 17..197 | 905 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:47:03 has no hits.
BO09387.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:43 Download gff for
BO09387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pit-RB | 1..2043 | 17..2057 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:03 Download gff for
BO09387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pit-RB | 167..2218 | 10..2065 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:03 Download gff for
BO09387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pit-RA | 119..2158 | 17..2058 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:52 Download gff for
BO09387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pit-RB | 173..2212 | 17..2058 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:18 Download gff for
BO09387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pit-RB | 173..2212 | 17..2058 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:18 Download gff for
BO09387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22037957..22038280 | 1733..2058 | 99 | | Plus |
| 3R | 22035835..22036015 | 17..197 | 100 | -> | Plus |
| 3R | 22036076..22036297 | 198..419 | 100 | -> | Plus |
| 3R | 22036507..22037193 | 420..1106 | 100 | -> | Plus |
| 3R | 22037252..22037877 | 1107..1732 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:03 Download gff for
BO09387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17861557..17861737 | 17..197 | 100 | -> | Plus |
| arm_3R | 17861798..17862019 | 198..419 | 100 | -> | Plus |
| arm_3R | 17862229..17862915 | 420..1106 | 100 | -> | Plus |
| arm_3R | 17862974..17863599 | 1107..1732 | 100 | -> | Plus |
| arm_3R | 17863679..17864002 | 1733..2058 | 99 | | Plus |
BO09387.pep Sequence
Translation from 16 to 2074
> BO09387.pep
MSIREKLLMKKIVKREKMKKELSQKKGNKNAQKQEPPKQNGNKPSKKPEK
LSKKHVAKDEDDDLEEDFQEAPLPKKKQQKQPPKKQQIQVANSDSESDDD
EQEDEADEDSDLDEVAEVDEEDVDSGSEDDDQQEDEDEEEPVPAKKTKLL
PNKSKAQNGKPAKDDEPFTVESSLAALDYRDSDDRSFASLKGAVSEATLR
AIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELIN
KLRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQ
VESEKLGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIG
FEEELKQIINLLPKRRQTMLFSATQTARIEALSKLALKSEPIYVGVHDNQ
DTATVDGLEQGYIVCPSEKRLLVLFTFLKKNRKKKVMVFFSSCMSVKYHH
ELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGLDIP
QVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPEELGFLRYLK
AAKVPLNEFEFSWQKIADIQLQLEKLIAKNYFLNQSAKEAFKSYVRAYDS
HQLKQIFNVNTLDLQAVAKSFGFLVPPVVDLKVGAAKRERPEKRVGGGGF
GFYKKMNEGSASKQRHFKQVNRDQAKKFMRASFLDH
BO09387.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:43:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pit-PC | 680 | CG6375-PC | 1..680 | 1..680 | 3483 | 100 | Plus |
| pit-PA | 680 | CG6375-PA | 1..680 | 1..680 | 3483 | 100 | Plus |
| pit-PB | 680 | CG6375-PB | 1..680 | 1..680 | 3483 | 100 | Plus |
| CG5800-PA | 826 | CG5800-PA | 79..531 | 194..629 | 774 | 38.2 | Plus |
| CG8611-PA | 974 | CG8611-PA | 138..883 | 11..645 | 689 | 27.4 | Plus |
