Clone Sequence Records
BO09395.3prime Sequence
371 bp (370 high quality bases) assembled on 2006-01-18
> BO09395.3prime
ATGGTCTAGAAAGCTTGCGCTGAAATCCTTTCTTGTTGACATCCACGAAA
TTGAATTAGAAAACAAAGTATGACAGAGAGTAGGTAAAGTAATGAGCGCA
TGGCTTTCTATACAGATGTGTCTCGAATTCGCTTTCGTAGGCTCTATGGA
AACCAGTGAATTTTCCTGTTTTAATCCTTTTTTTTTTTTTTTTTTTTTAA
AGCGAAAACAGAACTCAAAAGCGGGAGTTGTGATTGGGGATTGTGGTGGG
TAATTCGGGTGCGGTTGGGTGCATTTTGGGGATCGGACAACTGAAGGAAA
CTTAACAAACCGGTAAATGAAATTTAAAAGGCATTCTTTTCGAAATGGAA
TGGGCATGTCGACTGATAACT
BO09395.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31182-PA | 342 | CG31182-RA | 1..339 | 357..19 | 1695 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-01-31 14:47:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:47:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21327290..21327628 | 19..357 | 1695 | 100 | Plus |
Blast to na_te.dros performed 2015-01-31 14:47:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G3 | 4605 | G3 G3 4605bp | 3119..3252 | 200..67 | 102 | 55.9 | Minus |
BO09395.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:33 Download gff for
BO09395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31182-PA | 1..342 | 15..357 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:59 Download gff for
BO09395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31182-PA | 1..342 | 15..357 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:31:39 Download gff for
BO09395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21327282..21327628 | 10..357 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:31:39 Download gff for
BO09395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21327282..21327628 | 10..357 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:09:31 Download gff for
BO09395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17153004..17153350 | 10..357 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:09:31 Download gff for
BO09395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17153004..17153350 | 10..357 | 98 | | Plus |
BO09395.5prime Sequence
371 bp (370 high quality bases) assembled on 2006-01-18
> BO09395.5prime
GAAGTTATCAGTCGACATGCCCATTCCATTTCGAAAAGAATGCCTTTTAA
ATTTCATTTACCGGTTTGTTAAGTTTCCTTCAGTTGTCCGATCCCCAAAA
TGCACCCAACCGCACCCGAATTACCCACCACAATCCCCAATCACAACTCC
CGCTTTTGAGTTCTGTTTTCGCTTTAAAAAAAAAAAAAAAAAAAAAGGAT
TAAAACAGGAAAATTCACTGGTTTCCATAGAGCCTACGAAAGCGAATTCG
AGACACATCTGTATAGAAAGCCATGCGCTCATTACTTTACCTACTCTCTG
TCATACTTTGTTTTCTAATTCAATTTCGTGGATGTCAACAAGAAAGGATT
TCAGCGCAAGCTTTCTAGACC
BO09395.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31182-PA | 342 | CG31182-RA | 1..339 | 17..355 | 1695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-04 03:59:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:59:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21327290..21327628 | 355..17 | 1695 | 100 | Minus |
Blast to na_te.dros performed 2015-02-04 03:59:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G3 | 4605 | G3 G3 4605bp | 3119..3252 | 174..307 | 102 | 55.9 | Plus |
BO09395.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:34 Download gff for
BO09395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31182-PA | 1..342 | 17..359 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:13:00 Download gff for
BO09395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31182-PA | 1..342 | 17..359 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:40 Download gff for
BO09395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21327282..21327628 | 17..364 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:40 Download gff for
BO09395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21327282..21327628 | 17..364 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:58:42 Download gff for
BO09395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17153004..17153350 | 17..364 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:58:42 Download gff for
BO09395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17153004..17153350 | 17..364 | 98 | | Minus |
BO09395.complete Sequence
373 bp (373 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631493
> BO09395.complete
GAAGTTATCAGTCGACATGCCCATTCCATTTCGAAAAGAATGCCTTTTAA
ATTTCATTTACCGGTTTGTTAAGTTTCCTTCAGTTGTCCGATCCCCAAAA
TGCACCCAACCGCACCCGAATTACCCACCACAATCCCCAATCACAACTCC
CGCTTTTGAGTTCTGTTTTCGCTTTAAAAAAAAAAAAAAAAAAAAAGGAT
TAAAACAGGAAAATTCACTGGTTTCCATAGAGCCTACGAAAGCGAATTCG
AGACACATCTGTATAGAAAGCCATGCGCTCATTACTTTACCTACTCTCTG
TCATACTTTGTTTTCTAATTCAATTTCGTGGATGTCAACAAGAAAGGATT
TCAGCGCAAGCTTTCTAGACCAT
BO09395.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 14:03:05 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 14:03:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21327290..21327628 | 355..17 | 1695 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:03:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G3 | 4605 | G3 G3 4605bp | 3119..3252 | 174..307 | 102 | 55.9 | Plus |
BO09395.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:36 Download gff for
BO09395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6043-RD | 2120..2143 | 114..137 | 91 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 22:06:37 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:41 Download gff for
BO09395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21327288..21327628 | 17..357 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:41 Download gff for
BO09395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21327288..21327628 | 17..357 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:39:05 Download gff for
BO09395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17153010..17153350 | 17..357 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:39:05 Download gff for
BO09395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17153010..17153350 | 17..357 | 99 | | Minus |
BO09395.pep Sequence
Translation from 16 to 373
> BO09395.pep
MPIPFRKECLLNFIYRFVKFPSVVRSPKCTQPHPNYPPQSPITTPAFEFC
FRFKKKKKKKGLKQENSLVSIEPTKANSRHICIESHALITLPTLCHTLFS
NSISWMSTRKDFSASFLDH
Sequence BO09395.pep has no blast hits.