Clone BO09395 Report

Search the DGRC for BO09395

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:93
Well:95
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO09395.pep: validated full length
Sequenced Size:373

Clone Sequence Records

BO09395.3prime Sequence

371 bp (370 high quality bases) assembled on 2006-01-18

> BO09395.3prime
ATGGTCTAGAAAGCTTGCGCTGAAATCCTTTCTTGTTGACATCCACGAAA
TTGAATTAGAAAACAAAGTATGACAGAGAGTAGGTAAAGTAATGAGCGCA
TGGCTTTCTATACAGATGTGTCTCGAATTCGCTTTCGTAGGCTCTATGGA
AACCAGTGAATTTTCCTGTTTTAATCCTTTTTTTTTTTTTTTTTTTTTAA
AGCGAAAACAGAACTCAAAAGCGGGAGTTGTGATTGGGGATTGTGGTGGG
TAATTCGGGTGCGGTTGGGTGCATTTTGGGGATCGGACAACTGAAGGAAA
CTTAACAAACCGGTAAATGAAATTTAAAAGGCATTCTTTTCGAAATGGAA
TGGGCATGTCGACTGATAACT

BO09395.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG31182-PA 342 CG31182-RA 1..339 357..19 1695 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-01-31 14:47:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21327290..21327628 19..357 1695 100 Plus
Blast to na_te.dros performed 2015-01-31 14:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
G3 4605 G3 G3 4605bp 3119..3252 200..67 102 55.9 Minus

BO09395.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:33 Download gff for BO09395.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31182-PA 1..342 15..357 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:12:59 Download gff for BO09395.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31182-PA 1..342 15..357 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:31:39 Download gff for BO09395.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21327282..21327628 10..357 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:31:39 Download gff for BO09395.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21327282..21327628 10..357 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:09:31 Download gff for BO09395.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17153004..17153350 10..357 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:09:31 Download gff for BO09395.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17153004..17153350 10..357 98   Plus

BO09395.5prime Sequence

371 bp (370 high quality bases) assembled on 2006-01-18

> BO09395.5prime
GAAGTTATCAGTCGACATGCCCATTCCATTTCGAAAAGAATGCCTTTTAA
ATTTCATTTACCGGTTTGTTAAGTTTCCTTCAGTTGTCCGATCCCCAAAA
TGCACCCAACCGCACCCGAATTACCCACCACAATCCCCAATCACAACTCC
CGCTTTTGAGTTCTGTTTTCGCTTTAAAAAAAAAAAAAAAAAAAAAGGAT
TAAAACAGGAAAATTCACTGGTTTCCATAGAGCCTACGAAAGCGAATTCG
AGACACATCTGTATAGAAAGCCATGCGCTCATTACTTTACCTACTCTCTG
TCATACTTTGTTTTCTAATTCAATTTCGTGGATGTCAACAAGAAAGGATT
TCAGCGCAAGCTTTCTAGACC

BO09395.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG31182-PA 342 CG31182-RA 1..339 17..355 1695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-04 03:59:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21327290..21327628 355..17 1695 100 Minus
Blast to na_te.dros performed 2015-02-04 03:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
G3 4605 G3 G3 4605bp 3119..3252 174..307 102 55.9 Plus

BO09395.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:34 Download gff for BO09395.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31182-PA 1..342 17..359 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:13:00 Download gff for BO09395.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31182-PA 1..342 17..359 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:40 Download gff for BO09395.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21327282..21327628 17..364 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:40 Download gff for BO09395.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21327282..21327628 17..364 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:58:42 Download gff for BO09395.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17153004..17153350 17..364 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:58:42 Download gff for BO09395.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17153004..17153350 17..364 98   Minus

BO09395.complete Sequence

373 bp (373 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631493

> BO09395.complete
GAAGTTATCAGTCGACATGCCCATTCCATTTCGAAAAGAATGCCTTTTAA
ATTTCATTTACCGGTTTGTTAAGTTTCCTTCAGTTGTCCGATCCCCAAAA
TGCACCCAACCGCACCCGAATTACCCACCACAATCCCCAATCACAACTCC
CGCTTTTGAGTTCTGTTTTCGCTTTAAAAAAAAAAAAAAAAAAAAAGGAT
TAAAACAGGAAAATTCACTGGTTTCCATAGAGCCTACGAAAGCGAATTCG
AGACACATCTGTATAGAAAGCCATGCGCTCATTACTTTACCTACTCTCTG
TCATACTTTGTTTTCTAATTCAATTTCGTGGATGTCAACAAGAAAGGATT
TCAGCGCAAGCTTTCTAGACCAT

BO09395.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 14:03:05 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 14:03:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21327290..21327628 355..17 1695 100 Minus
Blast to na_te.dros performed 2014-11-27 14:03:04
Subject Length Description Subject Range Query Range Score Percent Strand
G3 4605 G3 G3 4605bp 3119..3252 174..307 102 55.9 Plus

BO09395.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:36 Download gff for BO09395.complete
Subject Subject Range Query Range Percent Splice Strand
CG6043-RD 2120..2143 114..137 91   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 22:06:37 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:41 Download gff for BO09395.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21327288..21327628 17..357 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:41 Download gff for BO09395.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21327288..21327628 17..357 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:39:05 Download gff for BO09395.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17153010..17153350 17..357 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:39:05 Download gff for BO09395.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17153010..17153350 17..357 99   Minus

BO09395.pep Sequence

Translation from 16 to 373

> BO09395.pep
MPIPFRKECLLNFIYRFVKFPSVVRSPKCTQPHPNYPPQSPITTPAFEFC
FRFKKKKKKKGLKQENSLVSIEPTKANSRHICIESHALITLPTLCHTLFS
NSISWMSTRKDFSASFLDH
Sequence BO09395.pep has no blast hits.