Clone Sequence Records
BO09401.3prime Sequence
947 bp (904 high quality bases) assembled on 2006-01-23
> BO09401.3prime
ATGGTCTAGAAAGCTTGCGTCCTTGGCGGGCACCTCAATGACGCGGGGCT
TGTCGATGATGCGTGCGGTCTTATTGCCCTTCTCAACGATGCCGATGATC
CAGGCCTGGTAGCCCTCCTGCTTCTCGATGTCCTTGCAATAAGCAGCGGC
CTGCTCTCGCGGCAGGCAGATCAGTAATCCTCCCGAGGTCTCCGCCGAGT
GGCCCTGCAGCAGCTGGAACATGTTGCCGCAGGCTTTGGCCACTGCAGCC
ATCTTGGCGATCACCGGCAGATTGTGGATAACAAAGGAGACATCCTTTTT
CTGATGTGCAGCCAGGGTTTGAGCGTGGCCTAGTAGTCCGAATCCAGTAA
TATCGGTGGCTCCGTGGGCATTGTACTTGTGCATGAGGCGAGCGGCTACG
CGGTTGAGGCGAGCCATAGAGTTCATCGCCCGGTGGTAGGCCTTGCGTAC
ATCTTCTTCGGACACCACCAGCTTAATGCGGTTCCAGCGCTCCGGCTGGT
CAATCCACTGGTGGGCATTCACGGCCACTTGGGTGCCCAGTGGCTTGGTT
AGCACCAGTACATCCCCTACCACGGCATTATCTGGCACAATATACTCATT
TGGCTGGCAAATGGTCGAGGCAACCCCACCAATGGTGCACCACGGATTGA
CCACGCTCTGGCCTCCAGTCACAGTGGTGCCTGCCTCCAAAGCGGAGTCC
TTAAAGCCTCGCATTATCAGCGGAATGACCACGTCACGCTCCTTCTCTGT
CATCTTGGTACTGACCGCCAACAGCATCAGCATGTTATCGCAATCTGTGA
CTCCCATGGCATACAAATCGCTGAGCACATTGGCGCACGCAATTTTGCCC
ATCATGTAGGGATCATCGACAATGGGGTAAAAGAAATCGGTGGTCTGCAC
CAGGCAGAGTCCGCCGTGTCGCAGCGAATTGACGGAACAGTCCAGGC
BO09401.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8553-PB | 1197 | SelD-RB | 266..1194 | 947..19 | 4570 | 99.6 | Minus |
| CG8553-PA | 1197 | SelD-RA | 266..1194 | 947..19 | 4570 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:43:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SelD-RA | 1521 | CG8553-RA | 396..1324 | 947..19 | 4600 | 99.7 | Minus |
| SelD-RB | 1887 | CG8553-RB | 762..1690 | 947..19 | 4600 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:43:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14268969..14269897 | 19..947 | 4600 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-01-31 14:43:18 has no hits.
BO09401.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:37 Download gff for
BO09401.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelD-PA | 266..1197 | 18..947 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:13:04 Download gff for
BO09401.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8553-PA | 266..1197 | 18..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:08:51 Download gff for
BO09401.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelD-RB | 762..1690 | 19..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:31:12 Download gff for
BO09401.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelD-RB | 762..1690 | 19..947 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:31:12 Download gff for
BO09401.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14268969..14269897 | 19..947 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:08:51 Download gff for
BO09401.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10156474..10157402 | 19..947 | 99 | | Plus |
BO09401.5prime Sequence
909 bp (864 high quality bases) assembled on 2006-01-23
> BO09401.5prime
GAAGTTATCAGTCGACATGAGCTACGCCGCTGATGTGCTGAACTCGGCCC
ATTTGGAGCTCCATGGTGGTGGCGACGCCGAGTTGCGTCGTCCATTCGAT
CCCACGGCCCATGATTTGGATGCATCCTTCCGCCTTACACGCTTCGCAGA
TCTAAAGGGGCGCGGCTGCAAAGTGCCGCAGGATGTGCTCTCCAAGCTGG
TGTCCGCCCTGCAGCAGGACTACTCTGCCCAGGACCAGGAACCGCAGTTT
CTCAACGTGGCCATTCCCCGCATCGGTATTGGCCTGGACTGCTCCGTCAT
TCCGCTGCGACACGGCGGACTCTGCCTGGTGCAGACCACCGATTTCTTTT
ACCCCATTGTCGATGATCCCTACATGATGGGCAAAATTGCGTGCGCCAAT
GTGCTCAGCGATTTGTATGCCATGGGAGTCACAGATTGCGATAACATGCT
GATGCTGTTGGCGGTCAGTACCAAGATGACAGAGAAGGAGCGTGACGTGG
TCATTCCGCTGATAATGCGAGGCTTTAAGGACTCCGCTTTGGAGGCAGGC
ACCACTGTGACTGGAGGCCAGAGCGTGGTCAATCCGTGGTGCACCATTGG
TGGGGTTGCCTCGACCATTTGCCAGCCAAATGAGTATATTGTGCCAGATA
ATGCCGTGGTAGGGGATGTACTGGTGCTAACCAAGCCACTGGGCACCCAA
GTGGCCGTGAATGCCCACCAGTGGATTGACCAGCCGGAGCGCTGGAACCG
CATTAAGCTGGTGGTGTCCGAAGAAGATGTACGCAAGGCCTACCACCGGG
CGATGAACTCTATGGCTCGCCTCAACCGCGTAGCCGCTCGCCTCATGCAC
AAGTACAATGCCCACGGAGCCACCGATATTACTGGATTCGGACTACTAGG
CCACGCTCA
BO09401.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8553-PB | 1197 | SelD-RB | 1..893 | 17..909 | 4465 | 100 | Plus |
| CG8553-PA | 1197 | SelD-RA | 1..893 | 17..909 | 4465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:14:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SelD-RA | 1521 | CG8553-RA | 131..1023 | 17..909 | 4465 | 100 | Plus |
| SelD-RB | 1887 | CG8553-RB | 497..1389 | 17..909 | 4465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:14:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14269270..14270162 | 909..17 | 4465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:14:54 has no hits.
BO09401.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:38 Download gff for
BO09401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelD-PA | 1..892 | 17..908 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:13:06 Download gff for
BO09401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8553-PA | 1..892 | 17..908 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:08:37 Download gff for
BO09401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelD-RB | 486..1388 | 6..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:05:11 Download gff for
BO09401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelD-RB | 486..1388 | 6..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:05:11 Download gff for
BO09401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14269271..14270171 | 6..908 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:08:37 Download gff for
BO09401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10156776..10157676 | 6..908 | 99 | | Minus |
BO09401.complete Sequence
1228 bp (1228 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631494
> BO09401.complete
GAAGTTATCAGTCGACATGAGCTACGCCGCTGATGTGCTGAACTCGGCCC
ATTTGGAGCTCCATGGTGGTGGCGACGCCGAGTTGCGTCGTCCATTCGAT
CCCACGGCCCATGATTTGGATGCATCCTTCCGCCTTACACGCTTCGCAGA
TCTAAAGGGGCGCGGCTGCAAAGTGCCGCAGGATGTGCTCTCCAAGCTGG
TGTCCGCCCTGCAGCAGGACTACTCTGCCCAGGACCAGGAACCGCAGTTT
CTCAACGTGGCCATTCCCCGCATCGGTATTGGCCTGGACTGCTCCGTCAT
TCCGCTGCGACACGGCGGACTCTGCCTGGTGCAGACCACCGATTTCTTTT
ACCCCATTGTCGATGATCCCTACATGATGGGCAAAATTGCGTGCGCCAAT
GTGCTCAGCGATTTGTATGCCATGGGAGTCACAGATTGCGATAACATGCT
GATGCTGTTGGCGGTCAGTACCAAGATGACAGAGAAGGAGCGTGACGTGG
TCATTCCGCTGATAATGCGAGGCTTTAAGGACTCCGCTTTGGAGGCAGGC
ACCACTGTGACTGGAGGCCAGAGCGTGGTCAATCCGTGGTGCACCATTGG
TGGGGTTGCCTCGACCATTTGCCAGCCAAATGAGTATATTGTGCCAGATA
ATGCCGTGGTAGGGGATGTACTGGTGCTAACCAAGCCACTGGGCACCCAA
GTGGCCGTGAATGCCCACCAGTGGATTGACCAGCCGGAGCGCTGGAACCG
CATTAAGCTGGTGGTGTCCGAAGAAGATGTACGCAAGGCCTACCACCGGG
CGATGAACTCTATGGCTCGCCTCAACCGCGTAGCCGCTCGCCTCATGCAC
AAGTACAATGCCCACGGAGCCACCGATATTACTGGATTCGGACTACTAGG
CCACGCTCAAACCCTGGCTGCACATCAGAAAAAGGATGTCTCCTTTGTTA
TCCACAATCTGCCGGTGATCGCCAAGATGGCTGCAGTGGCCAAAGCCTGC
GGCAACATGTTCCAGCTGCTGCAGGGCCACTCGGCGGAGACCTCGGGAGG
ATTACTGATCTGCCTGCCGCGAGAGCAGGCCGCTGCTTATTGCAAGGACA
TCGAGAAGCAGGAGGGCTACCAGGCCTGGATCATCGGCATCGTTGAGAAG
GGCAATAAGACCGCACGCATCATCGACAAGCCCCGCGTCATTGAGGTGCC
CGCCAAGGACGCAAGCTTTCTAGACCAT
BO09401.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:36:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SelD-RA | 1197 | CG8553-PA | 1..1194 | 17..1210 | 5970 | 100 | Plus |
| SelD-RB | 1197 | CG8553-PB | 1..1194 | 17..1210 | 5970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:36:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SelD-RA | 1521 | CG8553-RA | 131..1324 | 17..1210 | 5970 | 100 | Plus |
| SelD-RB | 1887 | CG8553-RB | 497..1690 | 17..1210 | 5970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:36:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14268969..14270162 | 1210..17 | 5970 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:36:01 has no hits.
BO09401.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:37 Download gff for
BO09401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelD-RA | 1..1197 | 17..1211 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:11 Download gff for
BO09401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelD-RA | 116..1320 | 6..1210 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:16:02 Download gff for
BO09401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelD-RB | 497..1690 | 17..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:38 Download gff for
BO09401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelD-RA | 116..1320 | 6..1210 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:02 Download gff for
BO09401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelD-RB | 497..1690 | 17..1212 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:02 Download gff for
BO09401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14268967..14270162 | 17..1212 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:16:02 Download gff for
BO09401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10156472..10157667 | 17..1212 | 99 | | Minus |
BO09401.pep Sequence
Translation from 16 to 1228
> BO09401.pep
MSYAADVLNSAHLELHGGGDAELRRPFDPTAHDLDASFRLTRFADLKGRG
CKVPQDVLSKLVSALQQDYSAQDQEPQFLNVAIPRIGIGLDCSVIPLRHG
GLCLVQTTDFFYPIVDDPYMMGKIACANVLSDLYAMGVTDCDNMLMLLAV
STKMTEKERDVVIPLIMRGFKDSALEAGTTVTGGQSVVNPWCTIGGVAST
ICQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWIDQPERWNRIKLVV
SEEDVRKAYHRAMNSMARLNRVAARLMHKYNAHGATDITGFGLLGHAQTL
AAHQKKDVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICL
PREQAAAYCKDIEKQEGYQAWIIGIVEKGNKTARIIDKPRVIEVPAKDAS
FLDH
BO09401.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SelD-PA | 398 | CG8553-PA | 1..398 | 1..398 | 2073 | 100 | Plus |
| SelD-PB | 398 | CG8553-PB | 1..398 | 1..398 | 2073 | 100 | Plus |
| Sps2-PC | 370 | CG5025-PC | 2..359 | 27..386 | 796 | 45.2 | Plus |
| Sps2-PA | 370 | CG5025-PA | 2..359 | 27..386 | 796 | 45.2 | Plus |
