Clone Sequence Records
BO09402.3prime Sequence
861 bp (860 high quality bases) assembled on 2006-01-23
> BO09402.3prime
ATGGTCTAGAAAGCTTGCCAACAGCTTAAAATTCTCGAGGGACAACCGCT
CCGCATCCTTGTTGATCTGCGCCAGACTATCCTCGGAGATGATGCGCACC
GTATCGACGTCCGGGTCATCGCCTCCGGAATCATCCAGCACACACAGCAG
ACCATCGTTCTCGATGTACGGGAAGAAGAACTCGGGCTTGTCCCAGCTCT
CCTTATCGCCGATTCCGTGGTGCGACTCTTGTGCCATGTGCTCCACGAGC
AGCTCCTCCTCGTCGAACTGCAGATCGCAGGTCACGCAGCGCAGCAGGCA
CATTTGGCGGCGCAGGTAGTTGACCACCTTGACGCGTTGGTAGAAGTTCA
GAGAGCTGGTGGCCTTCTCGAAATCCAAGCGATGAACCTCGTGCATGTGC
TTCTTGAGGGCGGTGAAGTTGTCGCCGAGATGGTGGCAAAACAGGCACTT
AATGGAGCTAGGCTCACCATCTGCCGCCCAATCCGACCAGTCCGAATCGT
GTTCGCCATCCGAATCAGGGCGAGCGAAGTGCTTGTCGAAGTCCACGCTG
CCGGTTTCAGGATCAGCAACTGTGGACACGGATGCCGTTTCCCGTCTTCG
CTTTTGGAGGTGCTGTTTCCGGGGCGTGGGGGCCGTTGGTACACGATTGT
AGTTGATAAGGAAGTACTTGTCGTACTCCCTTCGGTTCGGATTGATCCGC
TTGTGGCCCTTCTTGCGCATGTGTTCCTTGAGCGTGGGCCGATCCCTGAA
GATCTTCTCGCAGTAGAGGCACATTAACCGATTCAAGTTCTCCTCCAGGT
GATCCAGCAGTTCGTCCACATACACCAGCTTCTCGGGCTTGCCGACCAAC
AGAAAGTGCTT
BO09402.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9890-PA | 1359 | CG9890-RA | 514..1356 | 861..19 | 4215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:45:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9890-RA | 1460 | CG9890-RA | 553..1395 | 861..19 | 4215 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:45:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23062812..23063654 | 19..861 | 4215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:45:45 has no hits.
BO09402.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:39 Download gff for
BO09402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9890-PA | 514..1359 | 15..861 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:13:08 Download gff for
BO09402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9890-PA | 514..1359 | 15..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:57:40 Download gff for
BO09402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9890-RA | 553..1400 | 12..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:06 Download gff for
BO09402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9890-RA | 553..1400 | 12..861 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:06 Download gff for
BO09402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23062807..23063654 | 12..861 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:57:40 Download gff for
BO09402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18950330..18951177 | 12..861 | 99 | | Plus |
BO09402.5prime Sequence
833 bp (770 high quality bases) assembled on 2006-01-23
> BO09402.5prime
GAAGTTATCAGTCGACATGGAGCACGAGGTGGCTGTTTCAGGAGGGGATT
CCTCGCTGGAGGAGATCACTGGCAGTTCGAAACTCAAGCCCTCCAAGAAC
ACGGCCATCAAGTGCCTGAAATGCGACAAGGTGTACATATTTCCGTCAGA
TAAAGATGACTGCCTGGCGCATTTGTATATGGAGCACCGACTGGTCATCG
CCGATGTGGAGGATATAGCGCTTCTGGAGGACTACCTCCAGTACTGGGAA
AAGGAGTTTCACACCCACGAATTCGAGCAATATTGCACCACAATGTTCCT
GGATCAGCTGCCCGATGGCAAGTACGCCAAGAACGAAAAGTACTACCTGC
TGTGTGACATCCTGCCCCAGGACTACGAGCTGCGGCGAAGGTTGAAGGAG
AAGCGCCTAAGTGAAGCCCTGGAGCGACATCAGTTCGAGCTAACCGACCG
CACCTTCTCCAAGGAGTGCCTTTTCTGCAGGGCCATCATCAAGGGATTGA
GGGCGGACTATCTGGACCATCTGTTTGACAAGCACTTTCTGTTGGTCGGC
AAGCCCGAGAAGCTGGTGTATGTGGACGAACTGCTGGATCACCTGGAGGA
GAACTTGAATCGGTTAATGTGCCTCTACTGCGAGAAGATCTTCAGGGATC
GGCCCACGCTCAAGGAACACATGCGCAAGAAGGGCCACAAGCGGATCAAT
CCGAACCGAAGGGAGTACGACAAGTACTTCCTTATCAACTACAATCGTGT
ACCAACGGCCCCCACGCCCCGGAAACAGCACCTCCAAAAGCGAAGACGGG
AAACGGCATCCGTGTCCACAGTTGCTGATCCTG
BO09402.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9890-PA | 1359 | CG9890-RA | 1..817 | 17..833 | 4085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:06:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9890-RA | 1460 | CG9890-RA | 40..856 | 17..833 | 4085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:06:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23063351..23063920 | 833..264 | 2850 | 100 | Minus |
| 2R | 25286936 | 2R | 23063975..23064221 | 263..17 | 1235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:06:45 has no hits.
BO09402.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:40 Download gff for
BO09402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9890-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:13:09 Download gff for
BO09402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9890-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:08:24 Download gff for
BO09402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9890-RA | 40..856 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:02:14 Download gff for
BO09402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9890-RA | 40..856 | 17..833 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:02:14 Download gff for
BO09402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23063351..23063920 | 264..833 | 100 | <- | Minus |
| 2R | 23063975..23064221 | 17..263 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:08:24 Download gff for
BO09402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18950874..18951443 | 264..833 | 100 | <- | Minus |
| arm_2R | 18951498..18951744 | 17..263 | 100 | | Minus |
BO09402.complete Sequence
1390 bp (1390 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631495
> BO09402.complete
GAAGTTATCAGTCGACATGGAGCACGAGGTGGCTGTTTCAGGAGGGGATT
CCTCGCTGGAGGAGATCACTGGCAGTTCGAAACTCAAGCCCTCCAAGAAC
ACGGCCATCAAGTGCCTGAAATGCGACAAGGTGTACATATTTCCGTCAGA
TAAAGATGACTGCCTGGCGCATTTGTATATGGAGCACCGACTGGTCATCG
CCGATGTGGAGGATATAGCGCTTCTGGAGGACTACCTCCAGTACTGGGAA
AAGGAGTTTCACACCCACGAATTCGAGCAATATTGCACCACAATGTTCCT
GGATCAGCTGCCCGATGGCAAGTACGCCAAGAACGAAAAGTACTACCTGC
TGTGTGACATCCTGCCCCAGGACTACGAGCTGCGGCGAAGGTTGAAGGAG
AAGCGCCTAAGTGAAGCCCTGGAGCGACATCAGTTCGAGCTAACCGACCG
CACCTTCTCCAAGGAGTGCCTTTTCTGCAGGGCCATCATCAAGGGATTGA
GGGCGGACTATCTGGACCATCTGTTTGACAAGCACTTTCTGTTGGTCGGC
AAGCCCGAGAAGCTGGTGTATGTGGACGAACTGCTGGATCACCTGGAGGA
GAACTTGAATCGGTTAATGTGCCTCTACTGCGAGAAGATCTTCAGGGATC
GGCCCACGCTCAAGGAACACATGCGCAAGAAGGGCCACAAGCGGATCAAT
CCGAACCGAAGGGAGTACGACAAGTACTTCCTTATCAACTACAATCGTGT
ACCAACGGCCCCCACGCCCCGGAAACAGCACCTCCAAAAGCGAAGACGGG
AAACGGCATCCGTGTCCACAGTTGCTGATCCTGAAACCGGCAGCGTGGAC
TTCGACAAGCACTTCGCTCGCCCTGATTCGGATGGCGAACACGATTCGGA
CTGGTCGGATTGGGCGGCAGATGGTGAGCCTAGCTCCATTAAGTGCCTGT
TTTGCCACCATCTCGGCGACAACTTCACCGCCCTCAAGAAGCACATGCAC
GAGGTTCATCGCTTGGATTTCGAGAAGGCCACCAGCTCTCTGAACTTCTA
CCAACGCGTCAAGGTGGTCAACTACCTGCGCCGCCAAATGTGCCTGCTGC
GCTGCGTGACCTGCGATCTGCAGTTCGACGAGGAGGAGCTGCTCGTGGAG
CACATGGCACAAGAGTCGCACCACGGAATCGGCGATAAGGAGAGCTGGGA
CAAGCCCGAGTTCTTCTTCCCGTACATCGAGAACGATGGTCTGCTGTGTG
TGCTGGATGATTCCGGAGGCGATGACCCGGACGTCGATACGGTGCGCATC
ATCTCCGAGGATAGTCTGGCGCAGATCAACAAGGATGCGGAGCGGTTGTC
CCTCGAGAATTTTAAGCTGTTGGCAAGCTTTCTAGACCAT
BO09402.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:06:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9890-RA | 1359 | CG9890-PA | 1..1356 | 17..1372 | 6780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:06:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9890-RA | 1460 | CG9890-RA | 40..1395 | 17..1372 | 6780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:06:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23062812..23063920 | 1372..264 | 5545 | 100 | Minus |
| 2R | 25286936 | 2R | 23063975..23064221 | 263..17 | 1235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:06:23 has no hits.
BO09402.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:39 Download gff for
BO09402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9890-RA | 1..1359 | 17..1376 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:13 Download gff for
BO09402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9890-RA | 44..1404 | 17..1379 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:46:56 Download gff for
BO09402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9890-RA | 40..1395 | 17..1374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:39 Download gff for
BO09402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9890-RA | 44..1404 | 17..1379 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:51:22 Download gff for
BO09402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9890-RA | 40..1395 | 17..1374 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:51:22 Download gff for
BO09402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23062810..23063920 | 264..1374 | 99 | <- | Minus |
| 2R | 23063975..23064221 | 17..263 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:46:56 Download gff for
BO09402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18950333..18951443 | 264..1374 | 99 | <- | Minus |
| arm_2R | 18951498..18951744 | 17..263 | 100 | | Minus |
BO09402.pep Sequence
Translation from 16 to 1390
> BO09402.pep
MEHEVAVSGGDSSLEEITGSSKLKPSKNTAIKCLKCDKVYIFPSDKDDCL
AHLYMEHRLVIADVEDIALLEDYLQYWEKEFHTHEFEQYCTTMFLDQLPD
GKYAKNEKYYLLCDILPQDYELRRRLKEKRLSEALERHQFELTDRTFSKE
CLFCRAIIKGLRADYLDHLFDKHFLLVGKPEKLVYVDELLDHLEENLNRL
MCLYCEKIFRDRPTLKEHMRKKGHKRINPNRREYDKYFLINYNRVPTAPT
PRKQHLQKRRRETASVSTVADPETGSVDFDKHFARPDSDGEHDSDWSDWA
ADGEPSSIKCLFCHHLGDNFTALKKHMHEVHRLDFEKATSSLNFYQRVKV
VNYLRRQMCLLRCVTCDLQFDEEELLVEHMAQESHHGIGDKESWDKPEFF
FPYIENDGLLCVLDDSGGDDPDVDTVRIISEDSLAQINKDAERLSLENFK
LLASFLDH
BO09402.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9890-PA | 452 | CG9890-PA | 1..452 | 1..452 | 2437 | 100 | Plus |
