Clone BO09407 Report

Search the DGRC for BO09407

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:94
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG6453-RA
Protein status:BO09407.pep: validated full length
Sequenced Size:1678

Clone Sequence Records

BO09407.3prime Sequence

919 bp (831 high quality bases) assembled on 2006-01-23

> BO09407.3prime
ATGGTCTAGAAAGCTTGCGAGTTCGTCGTGCAGATTCTCCGATTCGGACT
GGAAAGCTTCGCTGTCGCAGGCGGCGGGAGTTTCGAATTCAAAGTAGTAT
TCACAGCGATTGGGCTCGCTGACGGCAGTGATTTTGGGTTCCAGGGCACA
ACTAATGTTGATGATGGCCGAACGGTTTGGACCATTCCAGCAGGCAGCAC
CATTGGTGTACTTTTGTTGGGAATATTGCTTTGGCTCTCCACTCCATTTG
TCCCAGCGACCCAGCGTGGTTTCAGGCCCACCGCTCCTCGACTTCTGGGA
GGCCCGATCGAAGGGACAAAGGGTGTACACATACTCCCGATCTTCGAAAT
TGTAGCACTGGCCATCGTGCACGGCCCACTCCTCGGTCAGGCCGTAGCCC
TTGTTGTTCTGGTCGTCGATCTCGTTAACCTCCTGCTGAATCTCGCGCAG
GCTGCGCTCCACTTCCTCGAGAGCATTTCGCGCCTCATTGGCCTGCTGGA
TCAAACGCTGCGTCTCCGGATCGTAGTTAGGTGGCGTGGCTTCTTCCGCA
TCCGGAGAGGCTTCGCCAACGCCCACATCGGGTTCCTCATCATCGTACTG
ATCCTCCTCACCCTCTTCGTCGGCTTCAATATCATCATCGCCGGCGAGTT
CAGCTTGTTCTTCGCTTAGCTTTGGTGGAGTGGGCTGGATCGACTCGGTG
GTGACCTCTGGCTGCTGGGCAACTTCCTCCGGCTGCGGCGGCTGGAACAG
ACCCTCGGCCAGCATTTGCAGAGACTTAATACGCGGCCAGGCCAGCGTTA
CGAAAGCATCTAGATCCACTCGTTCGCGCTCGTCCAGAAAGTACTTGGCC
TCCTCCACAGTTACCACGCCGTTGCGATCTCTGTCCAGATTCATGTCGAC
CATCAGTTCGGTAACTTCG

BO09407.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6453-PA 1647 CG6453-RA 744..1644 919..19 4480 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG6453-RB 2045 CG6453-RB 893..1793 919..19 4490 99.9 Minus
CG6453-RA 2255 CG6453-RA 893..1793 919..19 4490 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:47:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17482450..17483092 19..661 3215 100 Plus
2L 23513712 2L 17483156..17483415 660..919 1285 99.6 Plus
Blast to na_te.dros performed 2015-02-12 03:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
baggins 5453 baggins BAGGINS 5453bp 1589..1632 606..563 112 72.7 Minus
invader2 5124 invader2 INVADER2 5124bp 3222..3279 316..373 110 65.5 Plus

BO09407.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:47 Download gff for BO09407.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6453-PA 744..1647 16..919 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:13:18 Download gff for BO09407.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6453-PA 744..1647 16..919 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:43:00 Download gff for BO09407.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6453-RA 893..1802 11..919 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:45 Download gff for BO09407.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6453-RA 893..1802 11..919 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:45 Download gff for BO09407.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 17482441..17483090 11..659 99 <- Plus
2L 17483156..17483415 660..919 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:43:00 Download gff for BO09407.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17482441..17483090 11..659 99 <- Plus
arm_2L 17483156..17483415 660..919 99   Plus

BO09407.5prime Sequence

878 bp (824 high quality bases) assembled on 2006-01-23

> BO09407.5prime
GAAGTTATCAGTCGACATGCAAAGCTTGCAACTTAGCCAAGTGCTGCTAA
TACCGCTCCTGCTGGCCCTGGTGGCCACCAACGTAGGCTCTGCCAGCGAA
GTTCCACGTCCGCTGGGTGTTCCGCTGGCCAAGGCTTCACTGTACCAACC
TCGGGCGGGCGAAAACAGTTGGACCTGCTTGGATGGCAGCCGCACCATAC
CCTTCTCCCACATCAACGACGATTACTGCGACTGTGCGGATGGAAGCGAT
GAACCTGGCACTGCGGCCTGTCCGCAGGGCCAGTTCCATTGTGTGAACAA
AGGCCACCAGCCGGTAAATATACCCAGTTCGCAGGTGCAGGACGGCATCT
GTGACTGCTGCGATGGCAGTGACGAGTCAGAGACGGTCGGTTGCCCGAAT
ACCTGCTTGGAACTCGGAGCAGCGGCGGCTGTCCAAAGGCGGAATGCAGC
GGAGCTGCACAAACGTGGAGCTGAGCGGCGACAGGAGATGATTACCCGTG
GCAAGCAGATGAGGGCCGAGCGAGAGGCGCGCCGCCTTGAGCTAGATCAA
CGACGCAAGGAACAGGAACTGCTGCGCGCCGAAAAGGAGCAGCTCAAGCA
AACCGCTGAGGCTCTAGAGGCAGAAGCCATTGAAATCTTTAAGGAGCAAC
AGCGCGAGGTGGATGCTGACACCGCACAGGCGGAGCGGGAGCCGCAACAG
ATGCGCCAAGAGGCCACGCTCACCTTTGTGCGCTACGACACCAACAAAGA
TGGCTTCGTCGAAGTTACCGAACTGATGGTCGACATGAATCTGGACAGAG
ATCGCAACGGCGTGGTAACTGTGGAGGAGGCCAAGTACTTCCTGGACGAG
CGCGAACGAGTGGATCTAGATGCTTTCG

BO09407.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6453-PA 1647 CG6453-RA 1..862 17..878 4310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:08:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG6453-RB 2045 CG6453-RB 150..1011 17..878 4310 100 Plus
CG6453-RA 2255 CG6453-RA 150..1011 17..878 4310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:08:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17483297..17484158 878..17 4310 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:08:04 has no hits.

BO09407.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:48 Download gff for BO09407.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6453-PA 1..862 17..878 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:13:20 Download gff for BO09407.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6453-PA 1..862 17..878 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:08:26 Download gff for BO09407.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6453-RA 142..1011 9..878 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:02:36 Download gff for BO09407.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6453-RA 142..1011 9..878 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:02:36 Download gff for BO09407.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 17483297..17484166 9..878 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:08:26 Download gff for BO09407.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17483297..17484166 9..878 99   Minus

BO09407.complete Sequence

1678 bp (1678 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631496

> BO09407.complete
GAAGTTATCAGTCGACATGCAAAGCTTGCAACTTAGCCAAGTGCTGCTAA
TACCGCTCCTGCTGGCCCTGGTGGCCACCAACGTAGGCTCTGCCAGCGAA
GTTCCACGTCCGCTGGGTGTTCCGCTGGCCAAGGCTTCACTGTACCAACC
TCGGGCGGGCGAAAACAGTTGGACCTGCTTGGATGGCAGCCGCACCATAC
CCTTCTCCCACATCAACGACGATTACTGCGACTGTGCGGATGGAAGCGAT
GAACCTGGCACTGCGGCCTGTCCGCAGGGCCAGTTCCATTGTGTGAACAA
AGGCCACCAGCCGGTAAATATACCCAGTTCGCAGGTGCAGGACGGCATCT
GTGACTGCTGCGATGGCAGTGACGAGTCAGAGACGGTCGGTTGCCCGAAT
ACCTGCTTGGAACTCGGAGCAGCGGCGGCTGTCCAAAGGCGGAATGCAGC
GGAGCTGCACAAACGTGGAGCTGAGCGGCGACAGGAGATGATTACCCGTG
GCAAGCAGATGAGGGCCGAGCGAGAGGCGCGCCGCCTTGAGCTAGATCAA
CGACGCAAGGAACAGGAACTGCTGCGCGCCGAAAAGGAGCAGCTCAAGCA
AACCGCTGAGGCTCTAGAGGCAGAAGCCATTGAAATCTTTAAGGAGCAAC
AGCGCGAGGTGGATGCTGACACCGCACAGGCGGAGCGGGAGCCGCAACAG
ATGCGCCAAGAGGCCACGCTCACCTTTGTGCGCTACGACACCAACAAAGA
TGGCTTCGTCGAAGTTACCGAACTGATGGTCGACATGAATCTGGACAGAG
ATCGCAACGGCGTGGTAACTGTGGAGGAGGCCAAGTACTTCCTGGACGAG
CGCGAACGAGTGGATCTAGATGCTTTCGTAACGCTGGCCTGGCCGCGTAT
TAAGTCTCTGCAAATGCTGGCCGAGGGTCTGTTCCAGCCGCCGCAGCCGG
AGGAAGTTGCCCAGCAGCCAGAGGTCACCACCGAGTCGATCCAGCCCACT
CCACCAAAGCTAAGCGAAGAACAAGCTGAACTCGCCGGCGATGATGATAT
TGAAGCCGACGAAGAGGGTGAGGAGGATCAGTACGATGATGAGGAACCCG
ATGTGGGCGTTGGCGAAGCCTCTCCGGATGCGGAAGAAGCCACGCCACCT
AACTACGATCCGGAGACGCAGCGTTTGATCCAGCAGGCCAATGAGGCGCG
AAATGCTCTCGAGGAAGTGGAGCGCAGCCTGCGCGAGATTCAGCAGGAGG
TTAACGAGATCGACGACCAGAACAACAAGGGCTACGGCCTGACCGAGGAG
TGGGCCGTGCACGATGGCCAGTGCTACAATTTCGAAGATCGGGAGTATGT
GTACACCCTTTGTCCCTTCGATCGGGCCTCCCAGAAGTCGAGGAGCGGTG
GGCCTGAAACCACGCTGGGTCGCTGGGACAAATGGAGTGGAGAGCCAAAG
CAATATTCCCAACAAAAGTACACCAATGGTGCTGCCTGCTGGAATGGTCC
AAACCGTTCGGCCATCATCAACATTAGTTGTGCCCTGGAACCCAAAATCA
CTGCCGTCAGCGAGCCCAATCGCTGTGAATACTACTTTGAATTCGAAACT
CCCGCCGCCTGCGACAGCGAAGCTTTCCAGTCCGAATCGGAGAATCTGCA
CGACGAACTCGCAAGCTTTCTAGACCAT

BO09407.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6453-RB 1647 CG6453-PB 1..1644 17..1660 8220 100 Plus
CG6453-RA 1647 CG6453-PA 1..1644 17..1660 8220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG6453-RB 2045 CG6453-RB 150..1793 17..1660 8220 100 Plus
CG6453-RA 2255 CG6453-RA 150..1793 17..1660 8220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17483156..17484158 1019..17 5015 100 Minus
2L 23513712 2L 17482450..17483092 1660..1018 3215 100 Minus
Blast to na_te.dros performed 2014-11-27 19:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
baggins 5453 baggins BAGGINS 5453bp 1589..1632 1073..1116 112 72.7 Plus

BO09407.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:14 Download gff for BO09407.complete
Subject Subject Range Query Range Percent Splice Strand
CG6453-RA 1..1647 17..1663 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:11 Download gff for BO09407.complete
Subject Subject Range Query Range Percent Splice Strand
CG6453-RA 137..1797 9..1668 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:41 Download gff for BO09407.complete
Subject Subject Range Query Range Percent Splice Strand
CG6453-RA 150..1793 17..1662 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:14 Download gff for BO09407.complete
Subject Subject Range Query Range Percent Splice Strand
CG6453-RA 137..1797 9..1668 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:32 Download gff for BO09407.complete
Subject Subject Range Query Range Percent Splice Strand
CG6453-RA 150..1793 17..1662 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:32 Download gff for BO09407.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17482447..17483090 1020..1662 99 <- Minus
2L 17483156..17484158 17..1019 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:41 Download gff for BO09407.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17482447..17483090 1020..1662 99 <- Minus
arm_2L 17483156..17484158 17..1019 100   Minus

BO09407.pep Sequence

Translation from 16 to 1678

> BO09407.pep
MQSLQLSQVLLIPLLLALVATNVGSASEVPRPLGVPLAKASLYQPRAGEN
SWTCLDGSRTIPFSHINDDYCDCADGSDEPGTAACPQGQFHCVNKGHQPV
NIPSSQVQDGICDCCDGSDESETVGCPNTCLELGAAAAVQRRNAAELHKR
GAERRQEMITRGKQMRAEREARRLELDQRRKEQELLRAEKEQLKQTAEAL
EAEAIEIFKEQQREVDADTAQAEREPQQMRQEATLTFVRYDTNKDGFVEV
TELMVDMNLDRDRNGVVTVEEAKYFLDERERVDLDAFVTLAWPRIKSLQM
LAEGLFQPPQPEEVAQQPEVTTESIQPTPPKLSEEQAELAGDDDIEADEE
GEEDQYDDEEPDVGVGEASPDAEEATPPNYDPETQRLIQQANEARNALEE
VERSLREIQQEVNEIDDQNNKGYGLTEEWAVHDGQCYNFEDREYVYTLCP
FDRASQKSRSGGPETTLGRWDKWSGEPKQYSQQKYTNGAACWNGPNRSAI
INISCALEPKITAVSEPNRCEYYFEFETPAACDSEAFQSESENLHDELAS
FLDH

BO09407.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:00:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG6453-PB 548 CG6453-PB 1..548 1..548 2887 100 Plus
CG6453-PA 548 CG6453-PA 1..548 1..548 2887 100 Plus
CG7685-PB 207 CG7685-PB 103..206 34..130 250 48.6 Plus
CG7685-PA 213 CG7685-PA 109..212 34..130 250 48.6 Plus