Clone Sequence Records
BO09407.3prime Sequence
919 bp (831 high quality bases) assembled on 2006-01-23
> BO09407.3prime
ATGGTCTAGAAAGCTTGCGAGTTCGTCGTGCAGATTCTCCGATTCGGACT
GGAAAGCTTCGCTGTCGCAGGCGGCGGGAGTTTCGAATTCAAAGTAGTAT
TCACAGCGATTGGGCTCGCTGACGGCAGTGATTTTGGGTTCCAGGGCACA
ACTAATGTTGATGATGGCCGAACGGTTTGGACCATTCCAGCAGGCAGCAC
CATTGGTGTACTTTTGTTGGGAATATTGCTTTGGCTCTCCACTCCATTTG
TCCCAGCGACCCAGCGTGGTTTCAGGCCCACCGCTCCTCGACTTCTGGGA
GGCCCGATCGAAGGGACAAAGGGTGTACACATACTCCCGATCTTCGAAAT
TGTAGCACTGGCCATCGTGCACGGCCCACTCCTCGGTCAGGCCGTAGCCC
TTGTTGTTCTGGTCGTCGATCTCGTTAACCTCCTGCTGAATCTCGCGCAG
GCTGCGCTCCACTTCCTCGAGAGCATTTCGCGCCTCATTGGCCTGCTGGA
TCAAACGCTGCGTCTCCGGATCGTAGTTAGGTGGCGTGGCTTCTTCCGCA
TCCGGAGAGGCTTCGCCAACGCCCACATCGGGTTCCTCATCATCGTACTG
ATCCTCCTCACCCTCTTCGTCGGCTTCAATATCATCATCGCCGGCGAGTT
CAGCTTGTTCTTCGCTTAGCTTTGGTGGAGTGGGCTGGATCGACTCGGTG
GTGACCTCTGGCTGCTGGGCAACTTCCTCCGGCTGCGGCGGCTGGAACAG
ACCCTCGGCCAGCATTTGCAGAGACTTAATACGCGGCCAGGCCAGCGTTA
CGAAAGCATCTAGATCCACTCGTTCGCGCTCGTCCAGAAAGTACTTGGCC
TCCTCCACAGTTACCACGCCGTTGCGATCTCTGTCCAGATTCATGTCGAC
CATCAGTTCGGTAACTTCG
BO09407.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6453-PA | 1647 | CG6453-RA | 744..1644 | 919..19 | 4480 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:47:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6453-RB | 2045 | CG6453-RB | 893..1793 | 919..19 | 4490 | 99.9 | Minus |
CG6453-RA | 2255 | CG6453-RA | 893..1793 | 919..19 | 4490 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:47:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17482450..17483092 | 19..661 | 3215 | 100 | Plus |
2L | 23513712 | 2L | 17483156..17483415 | 660..919 | 1285 | 99.6 | Plus |
Blast to na_te.dros performed 2015-02-12 03:47:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
baggins | 5453 | baggins BAGGINS 5453bp | 1589..1632 | 606..563 | 112 | 72.7 | Minus |
invader2 | 5124 | invader2 INVADER2 5124bp | 3222..3279 | 316..373 | 110 | 65.5 | Plus |
BO09407.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:47 Download gff for
BO09407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6453-PA | 744..1647 | 16..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:13:18 Download gff for
BO09407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6453-PA | 744..1647 | 16..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:43:00 Download gff for
BO09407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6453-RA | 893..1802 | 11..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:45 Download gff for
BO09407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6453-RA | 893..1802 | 11..919 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:45 Download gff for
BO09407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17482441..17483090 | 11..659 | 99 | <- | Plus |
2L | 17483156..17483415 | 660..919 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:43:00 Download gff for
BO09407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17482441..17483090 | 11..659 | 99 | <- | Plus |
arm_2L | 17483156..17483415 | 660..919 | 99 | | Plus |
BO09407.5prime Sequence
878 bp (824 high quality bases) assembled on 2006-01-23
> BO09407.5prime
GAAGTTATCAGTCGACATGCAAAGCTTGCAACTTAGCCAAGTGCTGCTAA
TACCGCTCCTGCTGGCCCTGGTGGCCACCAACGTAGGCTCTGCCAGCGAA
GTTCCACGTCCGCTGGGTGTTCCGCTGGCCAAGGCTTCACTGTACCAACC
TCGGGCGGGCGAAAACAGTTGGACCTGCTTGGATGGCAGCCGCACCATAC
CCTTCTCCCACATCAACGACGATTACTGCGACTGTGCGGATGGAAGCGAT
GAACCTGGCACTGCGGCCTGTCCGCAGGGCCAGTTCCATTGTGTGAACAA
AGGCCACCAGCCGGTAAATATACCCAGTTCGCAGGTGCAGGACGGCATCT
GTGACTGCTGCGATGGCAGTGACGAGTCAGAGACGGTCGGTTGCCCGAAT
ACCTGCTTGGAACTCGGAGCAGCGGCGGCTGTCCAAAGGCGGAATGCAGC
GGAGCTGCACAAACGTGGAGCTGAGCGGCGACAGGAGATGATTACCCGTG
GCAAGCAGATGAGGGCCGAGCGAGAGGCGCGCCGCCTTGAGCTAGATCAA
CGACGCAAGGAACAGGAACTGCTGCGCGCCGAAAAGGAGCAGCTCAAGCA
AACCGCTGAGGCTCTAGAGGCAGAAGCCATTGAAATCTTTAAGGAGCAAC
AGCGCGAGGTGGATGCTGACACCGCACAGGCGGAGCGGGAGCCGCAACAG
ATGCGCCAAGAGGCCACGCTCACCTTTGTGCGCTACGACACCAACAAAGA
TGGCTTCGTCGAAGTTACCGAACTGATGGTCGACATGAATCTGGACAGAG
ATCGCAACGGCGTGGTAACTGTGGAGGAGGCCAAGTACTTCCTGGACGAG
CGCGAACGAGTGGATCTAGATGCTTTCG
BO09407.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6453-PA | 1647 | CG6453-RA | 1..862 | 17..878 | 4310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:08:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6453-RB | 2045 | CG6453-RB | 150..1011 | 17..878 | 4310 | 100 | Plus |
CG6453-RA | 2255 | CG6453-RA | 150..1011 | 17..878 | 4310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:08:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17483297..17484158 | 878..17 | 4310 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:08:04 has no hits.
BO09407.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:48 Download gff for
BO09407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6453-PA | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:13:20 Download gff for
BO09407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6453-PA | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:08:26 Download gff for
BO09407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6453-RA | 142..1011 | 9..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:02:36 Download gff for
BO09407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6453-RA | 142..1011 | 9..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:02:36 Download gff for
BO09407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17483297..17484166 | 9..878 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:08:26 Download gff for
BO09407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17483297..17484166 | 9..878 | 99 | | Minus |
BO09407.complete Sequence
1678 bp (1678 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631496
> BO09407.complete
GAAGTTATCAGTCGACATGCAAAGCTTGCAACTTAGCCAAGTGCTGCTAA
TACCGCTCCTGCTGGCCCTGGTGGCCACCAACGTAGGCTCTGCCAGCGAA
GTTCCACGTCCGCTGGGTGTTCCGCTGGCCAAGGCTTCACTGTACCAACC
TCGGGCGGGCGAAAACAGTTGGACCTGCTTGGATGGCAGCCGCACCATAC
CCTTCTCCCACATCAACGACGATTACTGCGACTGTGCGGATGGAAGCGAT
GAACCTGGCACTGCGGCCTGTCCGCAGGGCCAGTTCCATTGTGTGAACAA
AGGCCACCAGCCGGTAAATATACCCAGTTCGCAGGTGCAGGACGGCATCT
GTGACTGCTGCGATGGCAGTGACGAGTCAGAGACGGTCGGTTGCCCGAAT
ACCTGCTTGGAACTCGGAGCAGCGGCGGCTGTCCAAAGGCGGAATGCAGC
GGAGCTGCACAAACGTGGAGCTGAGCGGCGACAGGAGATGATTACCCGTG
GCAAGCAGATGAGGGCCGAGCGAGAGGCGCGCCGCCTTGAGCTAGATCAA
CGACGCAAGGAACAGGAACTGCTGCGCGCCGAAAAGGAGCAGCTCAAGCA
AACCGCTGAGGCTCTAGAGGCAGAAGCCATTGAAATCTTTAAGGAGCAAC
AGCGCGAGGTGGATGCTGACACCGCACAGGCGGAGCGGGAGCCGCAACAG
ATGCGCCAAGAGGCCACGCTCACCTTTGTGCGCTACGACACCAACAAAGA
TGGCTTCGTCGAAGTTACCGAACTGATGGTCGACATGAATCTGGACAGAG
ATCGCAACGGCGTGGTAACTGTGGAGGAGGCCAAGTACTTCCTGGACGAG
CGCGAACGAGTGGATCTAGATGCTTTCGTAACGCTGGCCTGGCCGCGTAT
TAAGTCTCTGCAAATGCTGGCCGAGGGTCTGTTCCAGCCGCCGCAGCCGG
AGGAAGTTGCCCAGCAGCCAGAGGTCACCACCGAGTCGATCCAGCCCACT
CCACCAAAGCTAAGCGAAGAACAAGCTGAACTCGCCGGCGATGATGATAT
TGAAGCCGACGAAGAGGGTGAGGAGGATCAGTACGATGATGAGGAACCCG
ATGTGGGCGTTGGCGAAGCCTCTCCGGATGCGGAAGAAGCCACGCCACCT
AACTACGATCCGGAGACGCAGCGTTTGATCCAGCAGGCCAATGAGGCGCG
AAATGCTCTCGAGGAAGTGGAGCGCAGCCTGCGCGAGATTCAGCAGGAGG
TTAACGAGATCGACGACCAGAACAACAAGGGCTACGGCCTGACCGAGGAG
TGGGCCGTGCACGATGGCCAGTGCTACAATTTCGAAGATCGGGAGTATGT
GTACACCCTTTGTCCCTTCGATCGGGCCTCCCAGAAGTCGAGGAGCGGTG
GGCCTGAAACCACGCTGGGTCGCTGGGACAAATGGAGTGGAGAGCCAAAG
CAATATTCCCAACAAAAGTACACCAATGGTGCTGCCTGCTGGAATGGTCC
AAACCGTTCGGCCATCATCAACATTAGTTGTGCCCTGGAACCCAAAATCA
CTGCCGTCAGCGAGCCCAATCGCTGTGAATACTACTTTGAATTCGAAACT
CCCGCCGCCTGCGACAGCGAAGCTTTCCAGTCCGAATCGGAGAATCTGCA
CGACGAACTCGCAAGCTTTCTAGACCAT
BO09407.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:38:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6453-RB | 1647 | CG6453-PB | 1..1644 | 17..1660 | 8220 | 100 | Plus |
CG6453-RA | 1647 | CG6453-PA | 1..1644 | 17..1660 | 8220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:38:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6453-RB | 2045 | CG6453-RB | 150..1793 | 17..1660 | 8220 | 100 | Plus |
CG6453-RA | 2255 | CG6453-RA | 150..1793 | 17..1660 | 8220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:38:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17483156..17484158 | 1019..17 | 5015 | 100 | Minus |
2L | 23513712 | 2L | 17482450..17483092 | 1660..1018 | 3215 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 19:38:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
baggins | 5453 | baggins BAGGINS 5453bp | 1589..1632 | 1073..1116 | 112 | 72.7 | Plus |
BO09407.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:14 Download gff for
BO09407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6453-RA | 1..1647 | 17..1663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:11 Download gff for
BO09407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6453-RA | 137..1797 | 9..1668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:41 Download gff for
BO09407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6453-RA | 150..1793 | 17..1662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:14 Download gff for
BO09407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6453-RA | 137..1797 | 9..1668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:32 Download gff for
BO09407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6453-RA | 150..1793 | 17..1662 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:32 Download gff for
BO09407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17482447..17483090 | 1020..1662 | 99 | <- | Minus |
2L | 17483156..17484158 | 17..1019 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:41 Download gff for
BO09407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17482447..17483090 | 1020..1662 | 99 | <- | Minus |
arm_2L | 17483156..17484158 | 17..1019 | 100 | | Minus |
BO09407.pep Sequence
Translation from 16 to 1678
> BO09407.pep
MQSLQLSQVLLIPLLLALVATNVGSASEVPRPLGVPLAKASLYQPRAGEN
SWTCLDGSRTIPFSHINDDYCDCADGSDEPGTAACPQGQFHCVNKGHQPV
NIPSSQVQDGICDCCDGSDESETVGCPNTCLELGAAAAVQRRNAAELHKR
GAERRQEMITRGKQMRAEREARRLELDQRRKEQELLRAEKEQLKQTAEAL
EAEAIEIFKEQQREVDADTAQAEREPQQMRQEATLTFVRYDTNKDGFVEV
TELMVDMNLDRDRNGVVTVEEAKYFLDERERVDLDAFVTLAWPRIKSLQM
LAEGLFQPPQPEEVAQQPEVTTESIQPTPPKLSEEQAELAGDDDIEADEE
GEEDQYDDEEPDVGVGEASPDAEEATPPNYDPETQRLIQQANEARNALEE
VERSLREIQQEVNEIDDQNNKGYGLTEEWAVHDGQCYNFEDREYVYTLCP
FDRASQKSRSGGPETTLGRWDKWSGEPKQYSQQKYTNGAACWNGPNRSAI
INISCALEPKITAVSEPNRCEYYFEFETPAACDSEAFQSESENLHDELAS
FLDH
BO09407.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:00:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6453-PB | 548 | CG6453-PB | 1..548 | 1..548 | 2887 | 100 | Plus |
CG6453-PA | 548 | CG6453-PA | 1..548 | 1..548 | 2887 | 100 | Plus |
CG7685-PB | 207 | CG7685-PB | 103..206 | 34..130 | 250 | 48.6 | Plus |
CG7685-PA | 213 | CG7685-PA | 109..212 | 34..130 | 250 | 48.6 | Plus |