Clone Sequence Records
BO09408.3prime Sequence
901 bp (847 high quality bases) assembled on 2006-01-23
> BO09408.3prime
ATGGTCTAGAAAGCTTGCGCTCCAGACATCGGCCGAGTAGCGCTTCTGAG
CCTCCATCTTCTTGATATACTGCACGGCGTCAGCCTCGCTCATGTTACCC
TTAGTGGACAAAATTTTCACTAAAATGTTCCTAACGTCCACGGCCATGTT
CTTTGCATCACCGCATATGTAGAAGTGCCCCTTATTCTCGCCAATCACGT
TCCATATAAGATCTGCGTCCTGCTCGAGCAGATGCTGCACGTAGACCTTC
TTGCCCTGGTCACGAGAAAAGGCGGCCTTCAGGTTGAGAGTGCCCTTCTT
AACCCACTCCTCCAACTCGGATTCGTAGATGTAGTCCTCACTGCGCTTAC
GGCAACCGAAGTAGAGAATCGACTCGCCCACGGTCTTGCCCTCATCGCGA
AGGAATTGTCGCTCCTGAATGAATCCGCGGAAGGGGGCCAAGCCAGTGCC
AGGACCCACCATTATGATAGGTGTCTCTGGCTTCGTAGGCAAACGGAACT
GCGACTTGCGGATGAATACCGGAACCTTTACTTCCTCACTGCCCTGCGGC
TGCTTGTTCTTCAGATATGTGGTGGCTACGCCCTTGTTGATGCGTCCCGT
CGGCGTCTTGTACTCCACGAGAACGGCTGTAACGTGGACATCAGTGGGGT
GCAGCTTAGCAGACGACGAGATGGAGTAGTAACGAGGCTGCAAGCGGGGC
AGCAGCTCGCAAACGTGATCGATGGGTGGGCGACAGGATTTGATGTCCTC
CAGAATGTGGACGATGTTGCGACAGGCGTCTTGGATCCAGCTCTGGTATT
TCTCCTTTTCTTCGGGACTGATGGAGGCCATGCTGCGCAGCAACTCCTTC
TCCTTCTCGTCAGTACAATACTCAGCGAGCTCCTTGAGGATGTGTGTGCG
G
BO09408.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11567-PA | 2040 | Cpr-RA | 1155..2037 | 901..19 | 4390 | 99.8 | Minus |
| CG11567-PB | 1653 | Cpr-RB | 768..1650 | 901..19 | 4390 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:21:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr-RD | 2679 | CG11567-RD | 1401..2283 | 901..19 | 4400 | 99.9 | Minus |
| Cpr-RC | 2581 | CG11567-RC | 1303..2185 | 901..19 | 4400 | 99.9 | Minus |
| Cpr-RB | 2157 | CG11567-RB | 879..1761 | 901..19 | 4400 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:21:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6345032..6345679 | 808..161 | 3240 | 100 | Minus |
| 2L | 23513712 | 2L | 6345742..6345884 | 161..19 | 715 | 100 | Minus |
| 2L | 23513712 | 2L | 6344854..6344945 | 901..810 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:21:22 has no hits.
BO09408.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:49 Download gff for
BO09408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr-PB | 768..1653 | 15..901 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:13:21 Download gff for
BO09408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11567-PB | 768..1653 | 15..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:24:36 Download gff for
BO09408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr-RB | 879..1767 | 12..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:47 Download gff for
BO09408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr-RB | 879..1767 | 12..901 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:47 Download gff for
BO09408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6344854..6344945 | 810..901 | 100 | -> | Minus |
| 2L | 6345031..6345679 | 161..809 | 99 | -> | Minus |
| 2L | 6345743..6345890 | 12..160 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:24:36 Download gff for
BO09408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6344854..6344945 | 810..901 | 100 | -> | Minus |
| arm_2L | 6345031..6345679 | 161..809 | 99 | -> | Minus |
| arm_2L | 6345743..6345890 | 12..160 | 97 | | Minus |
BO09408.5prime Sequence
850 bp (805 high quality bases) assembled on 2006-01-23
> BO09408.5prime
GAAGTTATCAGTCGACATGGCCAGCGAGCAAACGATTGATGGAGCAGCCG
CAATTCCCAGCGGCGGCGGCGACGAACCCTTCCTGGGACTGCTGGACGTG
GCCCTATTGGCGGTGCTAATCGGCGGCGCAGCCTTCTACTTCCTGCGTAG
CCGCAAGAAGGAGGAGGAGCCAACCAGGAGCTATTCCATACAACCCACCA
CAGTGTGCACCACCAGTGCGTCGGACAATTCGTTCATCAAGAAGCTCAAG
GCATCCGGACGCAGTCTGGTCGTCTTCTATGGCTCACAGACCGGAACCGG
CGAGGAGTTCGCCGGCCGTCTGGCCAAGGAGGGCATTCGTTACCGTCTGA
AGGGCATGGTTGCCGATCCCGAGGAATGCGACATGGAGGAGCTGCTGCAG
CTGAAGGACATCGACAACTCGCTGGCGGTCTTTTGCCTGGCCACCTACGG
CGAGGGAGATCCCACTGACAACGCCATGGAGTTCTACGAGTGGATCACCA
GCGGCGATGTCGATCTGAGCGGGCTAAATTATGCGGTCTTTGGCTTGGGC
AACAAGACCTATGAGCACTACAACAAGGTGGCCATCTATGTGGACAAGCG
ACTGGAGGAGCTGGGCGCCAACCGGGTCTTTGAACTGGGACTGGGCGACG
ATGATGCCAACATCGAGGATGACTTCATCACGTGGAAGGATCGCTTCTGG
CCCGCCGTGTGCGATCACTTCGGCATCGAGGGCGGCGGCGAGGAAGTGCT
CATCCGCCAGTACCGTTTGCTAGAACAGCCAGATGTGCAGCCTGACCGCA
TTTACACGGGAGAGATCGCCCGCCTGCACTCGATTCAGAACCAGCGCCCG
BO09408.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11567-PA | 2040 | Cpr-RA | 1..834 | 17..850 | 4170 | 100 | Plus |
| CG11567-PB | 1653 | Cpr-RB | 132..447 | 535..850 | 1580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:11:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr-RD | 2679 | CG11567-RD | 246..1080 | 16..850 | 4175 | 100 | Plus |
| Cpr-RC | 2581 | CG11567-RC | 148..982 | 16..850 | 4175 | 100 | Plus |
| Cpr-RA | 2739 | CG11567-RA | 306..1140 | 16..850 | 4175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:11:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6342727..6343071 | 193..537 | 1725 | 100 | Plus |
| 2L | 23513712 | 2L | 6344344..6344533 | 661..850 | 950 | 100 | Plus |
| 2L | 23513712 | 2L | 6342173..6342349 | 16..192 | 885 | 100 | Plus |
| 2L | 23513712 | 2L | 6344158..6344283 | 535..660 | 630 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 09:11:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 2305..2335 | 644..674 | 110 | 83.9 | Plus |
BO09408.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:50 Download gff for
BO09408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr-PA | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:13:22 Download gff for
BO09408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11567-PA | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:46:19 Download gff for
BO09408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr-RA | 306..1140 | 16..850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:44:14 Download gff for
BO09408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr-RA | 306..1140 | 16..850 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:44:14 Download gff for
BO09408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6342173..6342349 | 16..192 | 100 | -> | Plus |
| 2L | 6342727..6343069 | 193..535 | 100 | -> | Plus |
| 2L | 6344159..6344283 | 536..660 | 100 | -> | Plus |
| 2L | 6344344..6344533 | 661..850 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:46:19 Download gff for
BO09408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6342173..6342349 | 16..192 | 100 | -> | Plus |
| arm_2L | 6342727..6343069 | 193..535 | 100 | -> | Plus |
| arm_2L | 6344159..6344283 | 536..660 | 100 | -> | Plus |
| arm_2L | 6344344..6344533 | 661..850 | 100 | | Plus |
BO09408.complete Sequence
2071 bp (2071 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631497
> BO09408.complete
GAAGTTATCAGTCGACATGGCCAGCGAGCAAACGATTGATGGAGCAGCCG
CAATTCCCAGCGGCGGCGGCGACGAACCCTTCCTGGGACTGCTGGACGTG
GCCCTATTGGCGGTGCTAATCGGCGGCGCAGCCTTCTACTTCCTGCGTAG
CCGCAAGAAGGAGGAGGAGCCAACCAGGAGCTATTCCATACAACCCACCA
CAGTGTGCACCACCAGTGCGTCGGACAATTCGTTCATCAAGAAGCTCAAG
GCATCCGGACGCAGTCTGGTCGTCTTCTATGGCTCACAGACCGGAACCGG
CGAGGAGTTCGCCGGCCGTCTGGCCAAGGAGGGCATTCGTTACCGTCTGA
AGGGCATGGTTGCCGATCCCGAGGAATGCGACATGGAGGAGCTGCTGCAG
CTGAAGGACATCGACAACTCGCTGGCGGTCTTTTGCCTGGCCACCTACGG
CGAGGGAGATCCCACTGACAACGCCATGGAGTTCTACGAGTGGATCACCA
GCGGCGATGTCGATCTGAGCGGGCTAAATTATGCGGTCTTTGGCTTGGGC
AACAAGACCTATGAGCACTACAACAAGGTGGCCATCTATGTGGACAAGCG
ACTGGAGGAGCTGGGCGCCAACCGGGTCTTTGAACTGGGACTGGGCGACG
ATGATGCCAACATCGAGGATGACTTCATCACGTGGAAGGATCGCTTCTGG
CCCGCCGTGTGCGATCACTTCGGCATCGAGGGCGGCGGCGAGGAAGTGCT
CATCCGCCAGTACCGTTTGCTAGAACAGCCAGATGTGCAGCCTGACCGCA
TTTACACGGGAGAGATCGCCCGCCTGCACTCGATTCAGAACCAGCGCCCG
CCCTTCGACGCCAAGAACCCATTCCTGGCCCCCATCAAGGTGAACCGCGA
GCTGCACAAGGGCGGTGGCCGCTCCTGCATGCACATTGAGCTGAGCATCG
AGGGTTCCAAGATGCGCTACGATGCCGGAGATCATGTGGCCATGTTCCCT
GTTAACGACAAGAGTCTGGTGGAGAAGCTCGGCCAGCTGTGCAACGCCGA
TCTGGATACTGTGTTCTCGCTGATCAACACCGATACGGACAGCAGCAAGA
AGCACCCATTCCCTTGCCCCACTACGTACCGCACCGCTCTGACCCACTAC
CTGGAAATTACGGCCATACCCCGCACACACATCCTCAAGGAGCTCGCTGA
GTATTGTACTGACGAGAAGGAGAAGGAGTTGCTGCGCAGCATGGCCTCCA
TCAGTCCCGAAGGAAAGGAGAAATACCAGAGCTGGATCCAAGACGCCTGT
CGCAACATCGTCCACATTCTGGAGGACATCAAATCCTGTCGCCCACCCAT
CGATCACGTTTGCGAGCTGCTGCCCCGCTTGCAGCCTCGTTACTACTCCA
TCTCGTCGTCTGCTAAGCTGCACCCCACTGATGTCCACGTTACAGCCGTT
CTCGTGGAGTACAAGACGCCGACGGGACGCATCAACAAGGGCGTAGCCAC
CACATATCTGAAGAACAAGCAGCCGCAGGGCAGTGAGGAAGTAAAGGTTC
CGGTATTCATCCGCAAGTCGCAGTTCCGTTTGCCTACGAAGCCAGAGACA
CCTATCATAATGGTGGGTCCTGGCACTGGCTTGGCCCCCTTCCGCGGATT
CATTCAGGAGCGACAATTCCTTCGCGATGAGGGCAAGACCGTGGGCGAGT
CGATTCTCTACTTCGGTTGCCGTAAGCGCAGTGAGGACTACATCTACGAA
TCCGAGTTGGAGGAGTGGGTTAAGAAGGGCACTCTCAACCTGAAGGCCGC
CTTTTCTCGTGACCAGGGCAAGAAGGTCTACGTGCAGCATCTGCTCGAGC
AGGACGCAGATCTTATATGGAACGTGATTGGCGAGAATAAGGGGCACTTC
TACATATGCGGTGATGCAAAGAACATGGCCGTGGACGTTAGGAACATTTT
AGTGAAAATTTTGTCCACTAAGGGTAACATGAGCGAGGCTGACGCCGTGC
AGTATATCAAGAAGATGGAGGCTCAGAAGCGCTACTCGGCCGATGTCTGG
AGCGCAAGCTTTCTAGACCAT
BO09408.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:46:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr-RD | 2040 | CG11567-PD | 1..2037 | 17..2053 | 10185 | 100 | Plus |
| Cpr-RC | 2040 | CG11567-PC | 1..2037 | 17..2053 | 10185 | 100 | Plus |
| Cpr-RA | 2040 | CG11567-PA | 1..2037 | 17..2053 | 10185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:46:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr-RD | 2679 | CG11567-RD | 246..2283 | 16..2053 | 10190 | 100 | Plus |
| Cpr-RC | 2581 | CG11567-RC | 148..2185 | 16..2053 | 10190 | 100 | Plus |
| Cpr-RA | 2739 | CG11567-RA | 306..2343 | 16..2053 | 10190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:46:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6345029..6345679 | 1261..1911 | 3255 | 100 | Plus |
| 2L | 23513712 | 2L | 6344344..6344950 | 661..1267 | 3020 | 99.8 | Plus |
| 2L | 23513712 | 2L | 6342727..6343071 | 193..537 | 1725 | 100 | Plus |
| 2L | 23513712 | 2L | 6342173..6342349 | 16..192 | 885 | 100 | Plus |
| 2L | 23513712 | 2L | 6345742..6345884 | 1911..2053 | 715 | 100 | Plus |
| 2L | 23513712 | 2L | 6344158..6344283 | 535..660 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:46:29 has no hits.
BO09408.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:04 Download gff for
BO09408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr-RA | 1..2040 | 17..2057 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:16:56 Download gff for
BO09408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr-RA | 370..2413 | 16..2060 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:07 Download gff for
BO09408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr-RA | 307..2343 | 17..2055 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:04 Download gff for
BO09408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr-RA | 370..2413 | 16..2060 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:05 Download gff for
BO09408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr-RA | 307..2343 | 17..2055 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:05 Download gff for
BO09408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6342174..6342349 | 17..192 | 100 | -> | Plus |
| 2L | 6342727..6343069 | 193..535 | 100 | -> | Plus |
| 2L | 6344159..6344283 | 536..660 | 100 | -> | Plus |
| 2L | 6344344..6344945 | 661..1262 | 100 | -> | Plus |
| 2L | 6345031..6345679 | 1263..1911 | 100 | -> | Plus |
| 2L | 6345743..6345884 | 1912..2055 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:07 Download gff for
BO09408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6344159..6344283 | 536..660 | 100 | -> | Plus |
| arm_2L | 6342174..6342349 | 17..192 | 100 | -> | Plus |
| arm_2L | 6342727..6343069 | 193..535 | 100 | -> | Plus |
| arm_2L | 6344344..6344945 | 661..1262 | 100 | -> | Plus |
| arm_2L | 6345031..6345679 | 1263..1911 | 100 | -> | Plus |
| arm_2L | 6345743..6345884 | 1912..2055 | 98 | | Plus |
BO09408.pep Sequence
Translation from 16 to 2071
> BO09408.pep
MASEQTIDGAAAIPSGGGDEPFLGLLDVALLAVLIGGAAFYFLRSRKKEE
EPTRSYSIQPTTVCTTSASDNSFIKKLKASGRSLVVFYGSQTGTGEEFAG
RLAKEGIRYRLKGMVADPEECDMEELLQLKDIDNSLAVFCLATYGEGDPT
DNAMEFYEWITSGDVDLSGLNYAVFGLGNKTYEHYNKVAIYVDKRLEELG
ANRVFELGLGDDDANIEDDFITWKDRFWPAVCDHFGIEGGGEEVLIRQYR
LLEQPDVQPDRIYTGEIARLHSIQNQRPPFDAKNPFLAPIKVNRELHKGG
GRSCMHIELSIEGSKMRYDAGDHVAMFPVNDKSLVEKLGQLCNADLDTVF
SLINTDTDSSKKHPFPCPTTYRTALTHYLEITAIPRTHILKELAEYCTDE
KEKELLRSMASISPEGKEKYQSWIQDACRNIVHILEDIKSCRPPIDHVCE
LLPRLQPRYYSISSSAKLHPTDVHVTAVLVEYKTPTGRINKGVATTYLKN
KQPQGSEEVKVPVFIRKSQFRLPTKPETPIIMVGPGTGLAPFRGFIQERQ
FLRDEGKTVGESILYFGCRKRSEDYIYESELEEWVKKGTLNLKAAFSRDQ
GKKVYVQHLLEQDADLIWNVIGENKGHFYICGDAKNMAVDVRNILVKILS
TKGNMSEADAVQYIKKMEAQKRYSADVWSASFLDH
BO09408.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:16:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr-PD | 679 | CG11567-PD | 1..679 | 1..679 | 3568 | 100 | Plus |
| Cpr-PC | 679 | CG11567-PC | 1..679 | 1..679 | 3568 | 100 | Plus |
| Cpr-PA | 679 | CG11567-PA | 1..679 | 1..679 | 3568 | 100 | Plus |
| Cpr-PB | 550 | CG11567-PB | 41..550 | 170..679 | 2685 | 99.2 | Plus |
| CG13667-PB | 582 | CG13667-PB | 3..582 | 84..679 | 602 | 28.5 | Plus |
