Clone BO09411 Report

Search the DGRC for BO09411

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:94
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG1440-RA
Protein status:BO09411.pep: Imported from assembly
Sequenced Size:1498

Clone Sequence Records

BO09411.3prime Sequence

913 bp (838 high quality bases) assembled on 2006-01-23

> BO09411.3prime
ATGGTCTAGAAAGCTTGCCTGTGCTAGCGTTCCCATGGGATCCCAGGCAG
GCAGTACGATCGGATCCATGTCGAACACGCGCAACACATCCTCGGGCACG
TACTTCTTGTCGACGACCACCTCGAATCCAAACTCCCTAAACCAATCGGC
GTTCATCACCAGATAGCCCTTCTCGCCGCGATCCTCACCCCACGAGTTCT
CCACACGCAATTTCTGGGCCACGCCGCTCTTATCCACGGATACGGCGGTG
AAAACCATGGCATGGGTCATGGCCGATTCACCGTAGATCAGGCGGTCTGC
CTTGGAGAATGTCGTTTGTATGTCAATGTCGAAGACCAGCTTAAAATCGT
GGACATCCACATCCTCGATGCCCTGCTTGGAGGCGAATCGCTTGCTAACC
TCGCAGCCAAACCAAACGGCCTCGCCGGCCTTTAGCGACTTGGTGACAAC
CGCAAGGAGCAGTTCGACGGACTGATTGTTATACAGAACGGGTCGACCGC
CAACCACGTTGCCCAGGCAGTCAACAGTGTATGCCTGGTCATAGCTACTC
GTCGGCCGAGGATCGGTGACCAGGCACACTTTGTCCTCCACGTTGAAATG
CGGCTTAACATAACGCTCATAGAACTCCAGCGAACTAACGGGTCCGATTG
ACTGATAGTTCTTGCTCTTGTCATAGTACTCCCAGGTGAAGGTCTCCGAG
GGTATGCCCAGGCAAATGCCAACCACCTTGTAGATCTCGGCCATTTGCTC
CTGGATCTTGCAGGCGATCTCCTCATCCGTGGGATTCTTCTCCATCAGCA
CGCGCAAATTGCGGGCATACTCCCGTAGCTTGCTCTTCAGTATGGCGTTC
ATTCGTAAGCTGGACTCGCAGCTGAAGCTCTCGGGGAAGCATTTCTTTGG
CATAAGGCCGTGT

BO09411.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG1440-PA 1467 CG1440-RA 570..1464 913..19 4425 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG1440-RD 2394 CG1440-RD 993..1887 913..19 4445 99.8 Minus
CG1440-RC 2040 CG1440-RC 967..1861 913..19 4445 99.8 Minus
CG1440-RB 1969 CG1440-RB 896..1790 913..19 4445 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8439817..8440294 830..353 2390 100 Minus
X 23542271 X 8440545..8440757 231..19 1050 99.5 Minus
X 23542271 X 8440361..8440481 352..232 605 100 Minus
X 23542271 X 8439674..8439758 913..829 410 98.8 Minus
Blast to na_te.dros performed on 2015-02-11 11:05:21 has no hits.

BO09411.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:53 Download gff for BO09411.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1440-PA 570..1467 18..913 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:13:26 Download gff for BO09411.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1440-PA 570..1467 18..913 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:47:35 Download gff for BO09411.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1440-RB 896..1790 19..913 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:35:26 Download gff for BO09411.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1440-RB 896..1790 19..913 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:35:26 Download gff for BO09411.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8439674..8439758 829..913 98 -> Minus
X 8439819..8440294 353..828 100 -> Minus
X 8440361..8440481 232..352 100 -> Minus
X 8440545..8440757 19..231 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:47:35 Download gff for BO09411.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8333707..8333791 829..913 98 -> Minus
arm_X 8333852..8334327 353..828 100 -> Minus
arm_X 8334394..8334514 232..352 100 -> Minus
arm_X 8334578..8334790 19..231 99   Minus

BO09411.5prime Sequence

826 bp (750 high quality bases) assembled on 2006-01-23

> BO09411.5prime
GAAGTTATCAGTCGACATGTCTGACAACAACAGCGGATCCGGAGGAGGTG
GAAGCGGTGGCGGTGGCGCCGGTAACAATAACAGTGCCAATAGTGGTAAG
AACTCGACGCACAGGTTCGCTGAGACCAGTGTGATCACCAATCAATTGTT
GGAAAAATGGCGGAAAAACTTCTACAGCGAACCGAAGAATCTGCTGGCGC
AGAACGTCTGCTCACGCGTTGATCCGTTCGATGTGTGCCTGTCCAGGAAG
GCACTGGAGACCACCAATCATGTGTTCAACTACAAGGTGGAAACGGAGGG
CAAGCCGGTGACCAATCAAAGGAGCTCCGGCCGCTGCTGGCTGTTTGCGG
CCCTCAACTGCATCCGCCTGCCATTCATGAAGAACTACAATCTGGACGAG
TTCGAATTCTCGCAGGCCTTCCTCTTCTACTGGGACAAGATCGAGCGTTG
CAACTACTTTCTCAACAATGTTGTGAAGACGGCACAGCGCGGCGAGAAGG
TTGATGGTCGTCTGGTGTCGTTCCTGCTACTCGATCCCACCTCCGATGGC
GGCCAGTGGGACATGCTGGTCAATCTGATAACCAAACACGGCCTTATGCC
AAAGAAATGCTTTCCCGAGAGCTTCAGCTGCGAGTCCAGCTTACGAATGA
ACGCCATACTGAAGAGCAAGCTACGGGAGTATGCCCGCAATTTGCGCGTG
CTGATGGAGAAGAATCCCACGGATGAGGAGATCGCCTGCAAGATCCAGGA
GCAAATGGCCGAGATCTACAAGGTGGTTGGCATTTGCCTGGGCATACCCT
CGGAGACCTTCACCTGGGAGTACTAT

BO09411.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG1440-PA 1467 CG1440-RA 1..810 17..826 4050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1440-RA 1877 CG1440-RA 235..1044 17..826 4050 100 Plus
CG1440-RB 1969 CG1440-RB 330..1136 20..826 4035 100 Plus
CG1440-RD 2394 CG1440-RD 428..1233 21..826 4030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8439109..8439758 21..670 3250 100 Plus
X 23542271 X 8439817..8439974 669..826 790 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:37:29 has no hits.

BO09411.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:54 Download gff for BO09411.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1440-PA 1..810 17..826 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:13:27 Download gff for BO09411.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1440-PA 1..810 17..826 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:26:02 Download gff for BO09411.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1440-RA 204..1021 9..826 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:50:38 Download gff for BO09411.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1440-RA 227..1044 9..826 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:50:38 Download gff for BO09411.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8439106..8439758 16..670 99 -> Plus
X 8439819..8439974 671..826 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:26:02 Download gff for BO09411.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8333139..8333791 16..670 99 -> Plus
arm_X 8333852..8334007 671..826 100   Plus

BO09411.complete Sequence

1498 bp assembled on 2008-08-15

GenBank Submission: FJ631498

> BO09411.complete
GAAGTTATCAGTCGACATGTCTGACAACAACAGCGGATCCGGAGGAGGTG
GAAGCGGTGGCGGTGGCGCCGGTAACAATAACAGTGCCAATAGTGGTAAG
AACTCGACGCACAGGTTCGCTGAGACCAGTGTGATCACCAATCAATTGTT
GGAAAAATGGCGGAAAAACTTCTACAGCGAACCGAAGAATCTGCTGGCGC
AGAACGTCTGCTCACGCGTTGATCCGTTCGATGTGTGCCTGTCCAGGAAG
GCACTGGAGACCACCAATCATGTGTTCAACTACAAGGTGGAAACGGAGGG
CAAGCCGGTGACCAATCAAAGGAGCTCCGGCCGCTGCTGGCTGTTTGCGG
CCCTCAACTGCATCCGCCTGCCATTCATGAAGAACTACAATCTGGACGAG
TTCGAATTCTCGCAGGCCTTCCTCTTCTACTGGGACAAGATCGAGCGTTG
CAACTACTTTCTCAACAATGTTGTGAAGACGGCACAGCGCGGCGAGAAGG
TTGATGGTCGTCTGGTGTCGTTCCTGCTACTCGATCCCACCTCCGATGGC
GGCCAGTGGGACATGCTGGTCAATCTGATAACCAAACACGGCCTTATGCC
AAAGAAATGCTTTCCCGAGAGCTTCAGCTGCGAGTCCAGCTTACGAATGA
ACGCCATACTGAAGAGCAAGCTACGGGAGTATGCCCGCAATTTGCGCGTG
CTGATGGAGAAGAATCCCACGGATGAGGAGATCGCCTGCAAGATCCAGGA
GCAAATGGCCGAGATCTACAAGGTGGTTGGCATTTGCCTGGGCATACCCT
CGGAGACCTTCACCTGGGAGTACTATGACAAGAGCAAGAACTATCAGTCA
ATCGGACCCGTTAGTTCGCTGGAGTTCTATGAGCGTTATGTTAAGCCGCA
TTTCAACGTGGAGGACAAAGTGTGCCTGGTCACCGATCCTCGGCCGACGA
GTAGCTATGACCAGGCATACACTGTTGACTGCCTGGGCAACGTGGTTGGC
GGTCGACCCGTTCTGTATAACAATCAGTCCGTCGAACTGCTCCTTGCGGT
TGTCACCAAGTCGCTAAAGGCCGGCGAGGCCGTTTGGTTTGGCTGCGAGG
TTAGCAAGCGATTCGCCTCCAAGCAGGGCATCGAGGATGTGGATGTCCAC
GATTTTAAGCTGGTCTTCGACATTGACATACAAACGACATTCTCCAAGGC
AGACCGCCTGATCTACGGTGAATCGGCCATGACCCATGCCATGGTTTTCA
CCGCCGTATCCGTGGATAAGAGCGGCGTGGCCCAGAAATTGCGTGTGGAG
AACTCGTGGGGTGAGGATCGCGGCGAGAAGGGCTATCTGGTGATGAACGC
CGATTGGTTTAGGGAGTTTGGATTCGAGGTGGTCGTCGACAAGAAGTACG
TGCCCGAGGATGTGTTGCGCGTGTTCGACATGGATCCGATCGTACTGCCT
GCCTGGGATCCCATGGGAACGCTAGCACAGGCAAGCTTTCTAGACCAT

BO09411.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:23:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG1440-RA 1467 CG1440-PA 1..1464 17..1480 7305 99.9 Plus
CG1440-RD 1656 CG1440-PD 194..1653 21..1480 7285 99.9 Plus
CG1440-RC 1536 CG1440-PC 74..1533 21..1480 7285 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:23:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG1440-RA 1877 CG1440-RA 235..1698 17..1480 7305 99.9 Plus
CG1440-RB 1969 CG1440-RB 330..1790 20..1480 7290 99.9 Plus
CG1440-RD 2394 CG1440-RD 428..1887 21..1480 7285 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:23:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8439109..8439758 21..670 3250 100 Plus
X 23542271 X 8439817..8440294 669..1146 2390 100 Plus
X 23542271 X 8440545..8440757 1268..1480 1050 99.5 Plus
X 23542271 X 8440361..8440481 1147..1267 605 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:23:48 has no hits.

BO09411.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:16 Download gff for BO09411.complete
Subject Subject Range Query Range Percent Splice Strand
CG1440-RA 204..1675 9..1480 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:48 Download gff for BO09411.complete
Subject Subject Range Query Range Percent Splice Strand
CG1440-RA 212..1675 17..1482 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:12:35 Download gff for BO09411.complete
Subject Subject Range Query Range Percent Splice Strand
CG1440-RA 212..1675 17..1482 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:06 Download gff for BO09411.complete
Subject Subject Range Query Range Percent Splice Strand
CG1440-RA 235..1698 17..1482 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:06 Download gff for BO09411.complete
Subject Subject Range Query Range Percent Splice Strand
X 8440545..8440757 1268..1482 98   Plus
X 8439107..8439758 17..670 99 -> Plus
X 8439819..8440294 671..1146 100 -> Plus
X 8440361..8440481 1147..1267 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:48 Download gff for BO09411.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8333140..8333791 17..670 99 -> Plus
arm_X 8333852..8334327 671..1146 100 -> Plus
arm_X 8334394..8334514 1147..1267 100 -> Plus
arm_X 8334578..8334790 1268..1482 98   Plus

BO09411.pep Sequence

Translation from 16 to 1498

> BO09411.pep
MSDNNSGSGGGGSGGGGAGNNNSANSGKNSTHRFAETSVITNQLLEKWRK
NFYSEPKNLLAQNVCSRVDPFDVCLSRKALETTNHVFNYKVETEGKPVTN
QRSSGRCWLFAALNCIRLPFMKNYNLDEFEFSQAFLFYWDKIERCNYFLN
NVVKTAQRGEKVDGRLVSFLLLDPTSDGGQWDMLVNLITKHGLMPKKCFP
ESFSCESSLRMNAILKSKLREYARNLRVLMEKNPTDEEIACKIQEQMAEI
YKVVGICLGIPSETFTWEYYDKSKNYQSIGPVSSLEFYERYVKPHFNVED
KVCLVTDPRPTSSYDQAYTVDCLGNVVGGRPVLYNNQSVELLLAVVTKSL
KAGEAVWFGCEVSKRFASKQGIEDVDVHDFKLVFDIDIQTTFSKADRLIY
GESAMTHAMVFTAVSVDKSGVAQKLRVENSWGEDRGEKGYLVMNADWFRE
FGFEVVVDKKYVPEDVLRVFDMDPIVLPAWDPMGTLAQASFLDH

BO09411.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1440-PA 488 CG1440-PA 1..488 1..488 2589 100 Plus
CG1440-PD 551 CG1440-PD 65..551 2..488 2581 99.8 Plus
CG1440-PC 511 CG1440-PC 25..511 2..488 2581 99.8 Plus
CG1440-PB 368 CG1440-PB 1..368 121..488 1944 100 Plus
CG13423-PA 476 CG13423-PA 4..474 39..486 725 35.4 Plus