Clone Sequence Records
BO09411.3prime Sequence
913 bp (838 high quality bases) assembled on 2006-01-23
> BO09411.3prime
ATGGTCTAGAAAGCTTGCCTGTGCTAGCGTTCCCATGGGATCCCAGGCAG
GCAGTACGATCGGATCCATGTCGAACACGCGCAACACATCCTCGGGCACG
TACTTCTTGTCGACGACCACCTCGAATCCAAACTCCCTAAACCAATCGGC
GTTCATCACCAGATAGCCCTTCTCGCCGCGATCCTCACCCCACGAGTTCT
CCACACGCAATTTCTGGGCCACGCCGCTCTTATCCACGGATACGGCGGTG
AAAACCATGGCATGGGTCATGGCCGATTCACCGTAGATCAGGCGGTCTGC
CTTGGAGAATGTCGTTTGTATGTCAATGTCGAAGACCAGCTTAAAATCGT
GGACATCCACATCCTCGATGCCCTGCTTGGAGGCGAATCGCTTGCTAACC
TCGCAGCCAAACCAAACGGCCTCGCCGGCCTTTAGCGACTTGGTGACAAC
CGCAAGGAGCAGTTCGACGGACTGATTGTTATACAGAACGGGTCGACCGC
CAACCACGTTGCCCAGGCAGTCAACAGTGTATGCCTGGTCATAGCTACTC
GTCGGCCGAGGATCGGTGACCAGGCACACTTTGTCCTCCACGTTGAAATG
CGGCTTAACATAACGCTCATAGAACTCCAGCGAACTAACGGGTCCGATTG
ACTGATAGTTCTTGCTCTTGTCATAGTACTCCCAGGTGAAGGTCTCCGAG
GGTATGCCCAGGCAAATGCCAACCACCTTGTAGATCTCGGCCATTTGCTC
CTGGATCTTGCAGGCGATCTCCTCATCCGTGGGATTCTTCTCCATCAGCA
CGCGCAAATTGCGGGCATACTCCCGTAGCTTGCTCTTCAGTATGGCGTTC
ATTCGTAAGCTGGACTCGCAGCTGAAGCTCTCGGGGAAGCATTTCTTTGG
CATAAGGCCGTGT
BO09411.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1440-PA | 1467 | CG1440-RA | 570..1464 | 913..19 | 4425 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:05:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1440-RD | 2394 | CG1440-RD | 993..1887 | 913..19 | 4445 | 99.8 | Minus |
CG1440-RC | 2040 | CG1440-RC | 967..1861 | 913..19 | 4445 | 99.8 | Minus |
CG1440-RB | 1969 | CG1440-RB | 896..1790 | 913..19 | 4445 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:05:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8439817..8440294 | 830..353 | 2390 | 100 | Minus |
X | 23542271 | X | 8440545..8440757 | 231..19 | 1050 | 99.5 | Minus |
X | 23542271 | X | 8440361..8440481 | 352..232 | 605 | 100 | Minus |
X | 23542271 | X | 8439674..8439758 | 913..829 | 410 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:05:21 has no hits.
BO09411.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:53 Download gff for
BO09411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1440-PA | 570..1467 | 18..913 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:13:26 Download gff for
BO09411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1440-PA | 570..1467 | 18..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:47:35 Download gff for
BO09411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1440-RB | 896..1790 | 19..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:35:26 Download gff for
BO09411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1440-RB | 896..1790 | 19..913 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:35:26 Download gff for
BO09411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8439674..8439758 | 829..913 | 98 | -> | Minus |
X | 8439819..8440294 | 353..828 | 100 | -> | Minus |
X | 8440361..8440481 | 232..352 | 100 | -> | Minus |
X | 8440545..8440757 | 19..231 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:47:35 Download gff for
BO09411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8333707..8333791 | 829..913 | 98 | -> | Minus |
arm_X | 8333852..8334327 | 353..828 | 100 | -> | Minus |
arm_X | 8334394..8334514 | 232..352 | 100 | -> | Minus |
arm_X | 8334578..8334790 | 19..231 | 99 | | Minus |
BO09411.5prime Sequence
826 bp (750 high quality bases) assembled on 2006-01-23
> BO09411.5prime
GAAGTTATCAGTCGACATGTCTGACAACAACAGCGGATCCGGAGGAGGTG
GAAGCGGTGGCGGTGGCGCCGGTAACAATAACAGTGCCAATAGTGGTAAG
AACTCGACGCACAGGTTCGCTGAGACCAGTGTGATCACCAATCAATTGTT
GGAAAAATGGCGGAAAAACTTCTACAGCGAACCGAAGAATCTGCTGGCGC
AGAACGTCTGCTCACGCGTTGATCCGTTCGATGTGTGCCTGTCCAGGAAG
GCACTGGAGACCACCAATCATGTGTTCAACTACAAGGTGGAAACGGAGGG
CAAGCCGGTGACCAATCAAAGGAGCTCCGGCCGCTGCTGGCTGTTTGCGG
CCCTCAACTGCATCCGCCTGCCATTCATGAAGAACTACAATCTGGACGAG
TTCGAATTCTCGCAGGCCTTCCTCTTCTACTGGGACAAGATCGAGCGTTG
CAACTACTTTCTCAACAATGTTGTGAAGACGGCACAGCGCGGCGAGAAGG
TTGATGGTCGTCTGGTGTCGTTCCTGCTACTCGATCCCACCTCCGATGGC
GGCCAGTGGGACATGCTGGTCAATCTGATAACCAAACACGGCCTTATGCC
AAAGAAATGCTTTCCCGAGAGCTTCAGCTGCGAGTCCAGCTTACGAATGA
ACGCCATACTGAAGAGCAAGCTACGGGAGTATGCCCGCAATTTGCGCGTG
CTGATGGAGAAGAATCCCACGGATGAGGAGATCGCCTGCAAGATCCAGGA
GCAAATGGCCGAGATCTACAAGGTGGTTGGCATTTGCCTGGGCATACCCT
CGGAGACCTTCACCTGGGAGTACTAT
BO09411.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1440-PA | 1467 | CG1440-RA | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:37:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1440-RA | 1877 | CG1440-RA | 235..1044 | 17..826 | 4050 | 100 | Plus |
CG1440-RB | 1969 | CG1440-RB | 330..1136 | 20..826 | 4035 | 100 | Plus |
CG1440-RD | 2394 | CG1440-RD | 428..1233 | 21..826 | 4030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:37:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8439109..8439758 | 21..670 | 3250 | 100 | Plus |
X | 23542271 | X | 8439817..8439974 | 669..826 | 790 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:37:29 has no hits.
BO09411.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:09:54 Download gff for
BO09411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1440-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:13:27 Download gff for
BO09411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1440-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:26:02 Download gff for
BO09411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1440-RA | 204..1021 | 9..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:50:38 Download gff for
BO09411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1440-RA | 227..1044 | 9..826 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:50:38 Download gff for
BO09411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8439106..8439758 | 16..670 | 99 | -> | Plus |
X | 8439819..8439974 | 671..826 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:26:02 Download gff for
BO09411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8333139..8333791 | 16..670 | 99 | -> | Plus |
arm_X | 8333852..8334007 | 671..826 | 100 | | Plus |
BO09411.complete Sequence
1498 bp assembled on 2008-08-15
GenBank Submission: FJ631498
> BO09411.complete
GAAGTTATCAGTCGACATGTCTGACAACAACAGCGGATCCGGAGGAGGTG
GAAGCGGTGGCGGTGGCGCCGGTAACAATAACAGTGCCAATAGTGGTAAG
AACTCGACGCACAGGTTCGCTGAGACCAGTGTGATCACCAATCAATTGTT
GGAAAAATGGCGGAAAAACTTCTACAGCGAACCGAAGAATCTGCTGGCGC
AGAACGTCTGCTCACGCGTTGATCCGTTCGATGTGTGCCTGTCCAGGAAG
GCACTGGAGACCACCAATCATGTGTTCAACTACAAGGTGGAAACGGAGGG
CAAGCCGGTGACCAATCAAAGGAGCTCCGGCCGCTGCTGGCTGTTTGCGG
CCCTCAACTGCATCCGCCTGCCATTCATGAAGAACTACAATCTGGACGAG
TTCGAATTCTCGCAGGCCTTCCTCTTCTACTGGGACAAGATCGAGCGTTG
CAACTACTTTCTCAACAATGTTGTGAAGACGGCACAGCGCGGCGAGAAGG
TTGATGGTCGTCTGGTGTCGTTCCTGCTACTCGATCCCACCTCCGATGGC
GGCCAGTGGGACATGCTGGTCAATCTGATAACCAAACACGGCCTTATGCC
AAAGAAATGCTTTCCCGAGAGCTTCAGCTGCGAGTCCAGCTTACGAATGA
ACGCCATACTGAAGAGCAAGCTACGGGAGTATGCCCGCAATTTGCGCGTG
CTGATGGAGAAGAATCCCACGGATGAGGAGATCGCCTGCAAGATCCAGGA
GCAAATGGCCGAGATCTACAAGGTGGTTGGCATTTGCCTGGGCATACCCT
CGGAGACCTTCACCTGGGAGTACTATGACAAGAGCAAGAACTATCAGTCA
ATCGGACCCGTTAGTTCGCTGGAGTTCTATGAGCGTTATGTTAAGCCGCA
TTTCAACGTGGAGGACAAAGTGTGCCTGGTCACCGATCCTCGGCCGACGA
GTAGCTATGACCAGGCATACACTGTTGACTGCCTGGGCAACGTGGTTGGC
GGTCGACCCGTTCTGTATAACAATCAGTCCGTCGAACTGCTCCTTGCGGT
TGTCACCAAGTCGCTAAAGGCCGGCGAGGCCGTTTGGTTTGGCTGCGAGG
TTAGCAAGCGATTCGCCTCCAAGCAGGGCATCGAGGATGTGGATGTCCAC
GATTTTAAGCTGGTCTTCGACATTGACATACAAACGACATTCTCCAAGGC
AGACCGCCTGATCTACGGTGAATCGGCCATGACCCATGCCATGGTTTTCA
CCGCCGTATCCGTGGATAAGAGCGGCGTGGCCCAGAAATTGCGTGTGGAG
AACTCGTGGGGTGAGGATCGCGGCGAGAAGGGCTATCTGGTGATGAACGC
CGATTGGTTTAGGGAGTTTGGATTCGAGGTGGTCGTCGACAAGAAGTACG
TGCCCGAGGATGTGTTGCGCGTGTTCGACATGGATCCGATCGTACTGCCT
GCCTGGGATCCCATGGGAACGCTAGCACAGGCAAGCTTTCTAGACCAT
BO09411.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:23:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1440-RA | 1467 | CG1440-PA | 1..1464 | 17..1480 | 7305 | 99.9 | Plus |
CG1440-RD | 1656 | CG1440-PD | 194..1653 | 21..1480 | 7285 | 99.9 | Plus |
CG1440-RC | 1536 | CG1440-PC | 74..1533 | 21..1480 | 7285 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:23:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1440-RA | 1877 | CG1440-RA | 235..1698 | 17..1480 | 7305 | 99.9 | Plus |
CG1440-RB | 1969 | CG1440-RB | 330..1790 | 20..1480 | 7290 | 99.9 | Plus |
CG1440-RD | 2394 | CG1440-RD | 428..1887 | 21..1480 | 7285 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:23:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8439109..8439758 | 21..670 | 3250 | 100 | Plus |
X | 23542271 | X | 8439817..8440294 | 669..1146 | 2390 | 100 | Plus |
X | 23542271 | X | 8440545..8440757 | 1268..1480 | 1050 | 99.5 | Plus |
X | 23542271 | X | 8440361..8440481 | 1147..1267 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:23:48 has no hits.
BO09411.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:16 Download gff for
BO09411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1440-RA | 204..1675 | 9..1480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:48 Download gff for
BO09411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1440-RA | 212..1675 | 17..1482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:12:35 Download gff for
BO09411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1440-RA | 212..1675 | 17..1482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:06 Download gff for
BO09411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1440-RA | 235..1698 | 17..1482 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:06 Download gff for
BO09411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8440545..8440757 | 1268..1482 | 98 | | Plus |
X | 8439107..8439758 | 17..670 | 99 | -> | Plus |
X | 8439819..8440294 | 671..1146 | 100 | -> | Plus |
X | 8440361..8440481 | 1147..1267 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:48 Download gff for
BO09411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8333140..8333791 | 17..670 | 99 | -> | Plus |
arm_X | 8333852..8334327 | 671..1146 | 100 | -> | Plus |
arm_X | 8334394..8334514 | 1147..1267 | 100 | -> | Plus |
arm_X | 8334578..8334790 | 1268..1482 | 98 | | Plus |
BO09411.pep Sequence
Translation from 16 to 1498
> BO09411.pep
MSDNNSGSGGGGSGGGGAGNNNSANSGKNSTHRFAETSVITNQLLEKWRK
NFYSEPKNLLAQNVCSRVDPFDVCLSRKALETTNHVFNYKVETEGKPVTN
QRSSGRCWLFAALNCIRLPFMKNYNLDEFEFSQAFLFYWDKIERCNYFLN
NVVKTAQRGEKVDGRLVSFLLLDPTSDGGQWDMLVNLITKHGLMPKKCFP
ESFSCESSLRMNAILKSKLREYARNLRVLMEKNPTDEEIACKIQEQMAEI
YKVVGICLGIPSETFTWEYYDKSKNYQSIGPVSSLEFYERYVKPHFNVED
KVCLVTDPRPTSSYDQAYTVDCLGNVVGGRPVLYNNQSVELLLAVVTKSL
KAGEAVWFGCEVSKRFASKQGIEDVDVHDFKLVFDIDIQTTFSKADRLIY
GESAMTHAMVFTAVSVDKSGVAQKLRVENSWGEDRGEKGYLVMNADWFRE
FGFEVVVDKKYVPEDVLRVFDMDPIVLPAWDPMGTLAQASFLDH
BO09411.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:20:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1440-PA | 488 | CG1440-PA | 1..488 | 1..488 | 2589 | 100 | Plus |
CG1440-PD | 551 | CG1440-PD | 65..551 | 2..488 | 2581 | 99.8 | Plus |
CG1440-PC | 511 | CG1440-PC | 25..511 | 2..488 | 2581 | 99.8 | Plus |
CG1440-PB | 368 | CG1440-PB | 1..368 | 121..488 | 1944 | 100 | Plus |
CG13423-PA | 476 | CG13423-PA | 4..474 | 39..486 | 725 | 35.4 | Plus |