Clone Sequence Records
BO09418.3prime Sequence
964 bp (864 high quality bases) assembled on 2006-01-23
> BO09418.3prime
ATGGTCTAGAAAGCTTGCCCGCTGATTGATACCCTGGAAACCGTACTCCT
CGTAGTCGTCTTGCGTGTAAACAAACTCTTCAAAGTTGGGGCTGGTCGCA
ACCTCCTTGCCGCCGTACCACGCGTACCGCACCGGATCCTCGGGACAGAT
GAGTGACACTTCAAGATCGTCGGGCACCAGGGCACGTAAATCGCGCTTTA
GGCGCGGCAGAAATCCCGGAAACTGGGCACTGCCGCCCACAATAAGGATG
TTGAGCAGGAGTTCGCGGTGCGCTTCCCAGGGGCAAGCCTTCAGACAATC
GGCCACCGCTTCCGGAATGCCCACCTGTTGCACACCAATGTCCGAGGGAT
TGAAGAGCAGCTCGGGCACGGTGAAACGTTCATTGCACAGCGACACCATT
TGCTGTTGCTCCTCATCCTCGCGCGGCTTTCCGGGAACACGAACATAGCC
CCGTTTGACGGTGGTGAAGTCTGGAAGGACATAATCAACTGTGACTTCGC
GTCGCTTCTCCTCCGAATAATGCACCTGCATCGCCTGCTTGAAGTCCTCC
GCCACAAAGCAGACATCTTCCTTGATCTGGTTAACTACATGACTCTCGTC
CATGACGTTTAGGTGGCGATAAGAGATTAGCTCCTTTAGCTGGTTGGTCA
GCGCCTTCCCGCCCATGTCGATGCGTCGTATGCCTTGGAGAACGCGCCGT
CCCAGCACAAAAGGAACAACGTGGGTGAAACTGTAGCCTACATCGATGAT
GATGCAGTTAAGCGATTCCATTGTAGTCCGCTCCTCGCTGTCAGCCACAT
AGTTAAAGGCAGCCAGATCGGCAGCAGTGGTCTTGTACACCCCATCAACC
TTGTACTCCTCAAACAGAATCTCCAGCGTTGCCTCCTGGATGCTCTGGAA
GTCATCTGCGGCTCAGTGATGACAATATTGCGGGTCTCCAGCGAACAACC
AATGCCGTCTTTGC
BO09418.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11678-PA | 1197 | Actr13E-RA | 311..1194 | 902..19 | 4420 | 100 | Minus |
| CG11678-PA | 1197 | Actr13E-RA | 253..310 | 959..902 | 265 | 98.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:53:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp6-RA | 1347 | CG11678-RA | 335..1281 | 964..19 | 4680 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:53:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15735840..15736786 | 19..964 | 4655 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:53:44 has no hits.
BO09418.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:10:03 Download gff for
BO09418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11678-PA | 248..1197 | 15..964 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:13:40 Download gff for
BO09418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11678-PA | 248..1197 | 15..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:58:09 Download gff for
BO09418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp6-RA | 335..1284 | 15..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:02 Download gff for
BO09418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp6-RA | 335..1284 | 15..964 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:02 Download gff for
BO09418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15735837..15736786 | 15..964 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:58:09 Download gff for
BO09418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15629870..15630819 | 15..964 | 99 | | Plus |
BO09418.5prime Sequence
953 bp (863 high quality bases) assembled on 2006-01-23
> BO09418.5prime
GAAGTTATCAGTCGACATGGCCAACGCTGTGGTGGTGTTGGACAACGGAG
CGCATACGGCGAAAGTGGGCCTGGCCAATCAGGATGAGCCCCATGTGGTG
CCCAACTGCATCATGAAAGCAAAGAGCGAGCGGCGACGCGCTTTTGTGGG
AAATCAGATAGATGAATGCCGGGACACATCGGCGCTCTATTACATTCTGG
CGTTCCAGCGCGGCTACCTGCTCAACTGGCACACACAGAAAACGGTGTGG
GATTACATATTCAGCAAGGACGGCATTGGTTGTTCGCTGGAGAACCGCAA
TATTGTCATCACTGAGCCGCAGATGAACTTCCAGAGCATCCAGGAGGCAA
CGCTGGAGATTCTGTTTGAGGAGTACAAGGTTGATGGGGTGTACAAGACC
ACTGCTGCCGATCTGGCTGCCTTTAACTATGTGGCTGACAGCGAGGAGCG
GACTACAATGGAATCGCTTAACTGCATCATCATCGATGTAGGCTACAGTT
TCACCCACGTTGTTCCTTTTGTGCTGGGACGGCGCGTTCTCCAAGGCATA
CGACGCATCGACATGGGCGGGAAGGCGCTGACCAACCAGCTAAAGGAGCT
AATCTCTTATCGCCACCTAAACGTCATGGACGAGAGTCATGTAGTTAACC
AGATCAAGGAAGATGTCTGCTTTGTGGCGGAGGACTTCAAGCAGGCGATG
CAGGTGCATTATTCGGAGGAGAAGCGACGCGAAGTCACAGTTGATTATGT
CCTTCCAGACTTCACCACCGTCAAACGGGGCTATGTTCGTGTTCCCGGAA
AGCCGCGCGAGGATGAGGAGCAACAGCAAATGGTGTCGCTGTGCAATGAA
CGTTTCACCGTGCCCGAGCTGCTCTTCAATCCTCGGACATTGGTGTGCAA
CANGTGGGCATTCCGGAAGCGGTGGCCGATTGTCTGAANGCTTGCCCCTG
GGA
BO09418.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11678-PA | 1197 | Actr13E-RA | 1..866 | 17..882 | 4330 | 100 | Plus |
| CG11678-PA | 1197 | Actr13E-RA | 866..938 | 881..953 | 327 | 97.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:23:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp6-RA | 1347 | CG11678-RA | 88..1025 | 17..953 | 4643 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:23:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15736096..15737033 | 953..17 | 4618 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:23:42 has no hits.
BO09418.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:10:04 Download gff for
BO09418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11678-PA | 1..937 | 17..952 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:13:41 Download gff for
BO09418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11678-PA | 1..937 | 17..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:32:07 Download gff for
BO09418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp6-RA | 85..1024 | 10..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:42:05 Download gff for
BO09418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp6-RA | 85..1024 | 10..952 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:42:05 Download gff for
BO09418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15736097..15737036 | 10..952 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:32:07 Download gff for
BO09418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15630130..15631069 | 10..952 | 99 | | Minus |
BO09418.complete Sequence
1228 bp assembled on 2007-10-17
GenBank Submission: FJ631499
> BO09418.complete
GAAGTTATCAGTCGACATGGCCAACGCTGTGGTGGTGTTGGACAACGGAG
CGCATACGGCGAAAGTGGGCCTGGCCAATCAGGATGAGCCCCATGTGGTG
CCCAACTGCATCATGAAAGCAAAGAGCGAGCGGCGACGCGCTTTTGTGGG
AAATCAGATAGATGAATGCCGGGACACATCGGCGCTCTATTACATTCTGG
CGTTCCAGCGCGGCTACCTGCTCAACTGGCACACACAGAAAACGGTGTGG
GATTACATATTCAGCAAGGACGGCATTGGTTGTTCGCTGGAGAACCGCAA
TATTGTCATCACTGAGCCGCAGATGAACTTCCAGAGCATCCAGGAGGCAA
CGCTGGAGATTCTGTTTGAGGAGTACAAGGTTGATGGGGTGTACAAGACC
ACTGCTGCCGATCTGGCTGCCTTTAACTATGTGGCTGACAGCGAGGAGCG
GACTACAATGGAATCGCTTAACTGCATCATCATCGATGTAGGCTACAGTT
TCACCCACGTTGTTCCTTTTGTGCTGGGACGGCGCGTTCTCCAAGGCATA
CGACGCATCGACATGGGCGGGAAGGCGCTGACCAACCAGCTAAAGGAGCT
AATCTCTTATCGCCACCTAAACGTCATGGACGAGAGTCATGTAGTTAACC
AGATCAAGGAAGATGTCTGCTTTGTGGCGGAGGACTTCAAGCAGGCGATG
CAGGTGCATTATTCGGAGGAGAAGCGACGCGAAGTCACAGTTGATTATGT
CCTTCCAGACTTCACCACCGTCAAACGGGGCTATGTTCGTGTTCCCGGAA
AGCCGCGCGAGGATGAGGAGCAACAGCAAATGGTGTCGCTGTGCAATGAA
CGTTTCACCGTGCCCGAGCTGCTCTTCAATCCCTCGGACATTGGTGTGCA
ACAGGTGGGCATTCCGGAAGCGGTGGCCGATTGTCTGAAGGCTTGCCCCT
GGGAAGCGCACCGCGAACTCCTGCTCAACATCCTTATTGTGGGCGGCAGT
GCCCAGTTTCCGGGATTTCTGCCGCGCCTAAAGCGCGATTTACGTGCCCT
GGTGCCCGACGATCTTGAAGTGTCACTCATCTGTCCCGAGGATCCGGTGC
GGTACGCGTGGTACGGCGGCAAGGAGGTTGCGACCAGCCCCAACTTTGAA
GAGTTTGTTTACACGCAAGACGACTACGAGGAGTACGGTTTCCAGGGTAT
CAATCAGCGGGCAAGCTTTCTAGACCAT
BO09418.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:40:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp6-RA | 1197 | CG11678-PA | 1..1194 | 17..1210 | 5970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:40:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp6-RA | 1347 | CG11678-RA | 88..1281 | 17..1210 | 5970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:40:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15735840..15737033 | 1210..17 | 5970 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:40:10 has no hits.
BO09418.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:44 Download gff for
BO09418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Actr13E-RA | 1..1197 | 17..1214 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:06 Download gff for
BO09418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Actr13E-RA | 41..1240 | 10..1214 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:19:57 Download gff for
BO09418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp6-RA | 88..1281 | 17..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:42:42 Download gff for
BO09418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Actr13E-RA | 44..1237 | 17..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:48 Download gff for
BO09418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp6-RA | 88..1281 | 17..1212 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:48 Download gff for
BO09418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15735838..15737033 | 17..1212 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:19:57 Download gff for
BO09418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15629871..15631066 | 17..1212 | 99 | | Minus |
BO09418.pep Sequence
Translation from 16 to 1228
> BO09418.pep
MANAVVVLDNGAHTAKVGLANQDEPHVVPNCIMKAKSERRRAFVGNQIDE
CRDTSALYYILAFQRGYLLNWHTQKTVWDYIFSKDGIGCSLENRNIVITE
PQMNFQSIQEATLEILFEEYKVDGVYKTTAADLAAFNYVADSEERTTMES
LNCIIIDVGYSFTHVVPFVLGRRVLQGIRRIDMGGKALTNQLKELISYRH
LNVMDESHVVNQIKEDVCFVAEDFKQAMQVHYSEEKRREVTVDYVLPDFT
TVKRGYVRVPGKPREDEEQQQMVSLCNERFTVPELLFNPSDIGVQQVGIP
EAVADCLKACPWEAHRELLLNILIVGGSAQFPGFLPRLKRDLRALVPDDL
EVSLICPEDPVRYAWYGGKEVATSPNFEEFVYTQDDYEEYGFQGINQRAS
FLDH
BO09418.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:43:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp6-PA | 398 | CG11678-PA | 1..398 | 1..398 | 2091 | 100 | Plus |
| Act87E-PC | 376 | CG18290-PC | 7..376 | 4..401 | 424 | 26.7 | Plus |
| Act87E-PB | 376 | CG18290-PB | 7..376 | 4..401 | 424 | 26.7 | Plus |
| Act87E-PA | 376 | CG18290-PA | 7..376 | 4..401 | 424 | 26.7 | Plus |
| Act57B-PA | 376 | CG10067-PA | 7..376 | 4..401 | 421 | 26.5 | Plus |
