Clone Sequence Records
BO09419.3prime Sequence
832 bp (801 high quality bases) assembled on 2006-01-23
> BO09419.3prime
ATGGTCTAGTAAGCTTGCGATGTTTATCACGCGGCTCAACTTCTGGATGC
GGTTGAGCAGCAGATCGCCCTGCTTGATGGTCGCCTGGTACTGCCAGTTC
TTGTTGTCAGGCCGATTGGTCTCCACAATGCCGCCAACGCGATCCACCTT
GGCATGCAGCCGTCCGGCGGCGATGAAGCGTGCCAGCTCCTGGTCAATGT
ATTCCACTGTTACGCCGAACGACTCGGCCATATACTGCAGGGTGAGGGAG
CGATACGACTCCAGCAACTGGGTGTAGCCCAGAATGCGCATCTCGCGCAC
GTAGTAGCGGTAGTGGGGATGAATGAGGTAGTCCAAGCGCAATTGCTTCT
CTACGCCGGCCAGGTGTACGTAGAAGTTCTCATATTGGCAGTTGTACAAG
GAAAACAGGAACTGTTTCACGTCGGGCAGGCCATGGAGCACCTCCTGGAT
TTCGGAGCCCTTGATCACTTTGTCGCGCAGCTCATTGCGCGGCAGGGCAA
TCATGGCCACGTAAACGGTGTAACGCACGAAGGTGGGGTAGTCCATCAGT
TCGTATGAGGTGAAGGTGCTTACGGTGTCCAGGAAGAACGTGGCCGCCGC
CTTGAAGTCACGCACCGCCACCGAGTAAACACCCTGGTAGACCTTCAACC
GGTTGCGTCGGTCCCAATCGCCGCCTTCCTCGATCAGATACTTGGCCTTG
TCGATGTTGCGAGTGATGAGATCGTGGTCAAGGTAAAACAGTCCCAAGCG
GATCAGATGGAACACGATGTCCAGGCGGTGACCCAGGGAAACGGTCTTCT
CGTAGGTCTTGCGGAAGGCAGTCTCTGCGGCA
BO09419.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5378-PA | 1170 | Rpn7-RA | 354..1167 | 832..19 | 4070 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn7-RA | 1393 | CG5378-RA | 486..1299 | 832..19 | 4070 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22460756..22461569 | 19..832 | 4070 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:01:46 has no hits.
BO09419.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:10:05 Download gff for
BO09419.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn7-PA | 355..1170 | 15..831 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:13:42 Download gff for
BO09419.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5378-PA | 355..1170 | 15..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:54:36 Download gff for
BO09419.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn7-RA | 487..1302 | 15..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:22:39 Download gff for
BO09419.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn7-RA | 487..1302 | 15..831 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:22:39 Download gff for
BO09419.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22460753..22461568 | 15..831 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:54:36 Download gff for
BO09419.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18286475..18287290 | 15..831 | 99 | | Plus |
BO09419.5prime Sequence
931 bp (840 high quality bases) assembled on 2006-01-23
> BO09419.5prime
GAAGTTATCAGTCGACATGCCTGCCGAAAACTTGGAGGAGCAGGGTCTGG
AGAAGAACCCGAACCTGGAGCTGGCCCAGACGAAGTTCCTGCTTACCCTG
GCGGAATACAAGCAGGATGCGGCATTGAAGGCGAAGCTTCTGGAGGCGAT
TCGCACGGAGAATATGGCCCCGTGGTACGAGCACATCTGCTCGGAACTCG
GCTGGACCGTAGACAAGGATCTGCTGGCGCGAATGAAGGAGAACAACCGC
GTAGAGGTGGAGCAGCTAGATGCGGCAATCGAGGATGCGGAGAAGAATCT
GGGCGAGATGGAAGTGCGCGAGGCGAATCTTAAGAAGTCAGAGTACTTGT
GCCGCATCGGCGACAAGGCTGCCGCAGAGACTGCCTTCCGCAAGACCTAC
GAGAAGACCGTTTCCCTGGGTCACCGCCTGGACATCGTGTTCCATCTGAT
CCGCTTGGGACTGTTTTACCTTGACCACGATCTCATCACTCGCAACATCG
ACAAGGCCAAGTATCTGATCGAGGAAGGCGGCGATTGGGACCGACGCAAC
CGGTTGAAGGTCTACCAGGGTGTTTACTCGGTGGCGGTGCGTGACTTCAA
GGCGGCGGCCACGTTCTTCCTGGACACCGTAAGCACCTTCACCTCATACG
AACTGATGGACTACCCCACCTTCGTGCGTTACACCGTTTACGTGGCCATG
ATTGCCCTGCCGCGCAATGAGCTGCGCGACAAAGTGATCAAGGGCTCCGA
AATCCAGGAGGTGCTCCATGGCCTGCCCGACGTGAAACAGTTCCTGTTTT
CCTTGTACAACTGCCAATATGAGAACTTCTACGTACACCTGGCCGGCGTA
GAGAAGCAATTGCGCTTGGACTACCTCATTCATCCCCACTACCGCTACTA
CGTGCGCGAGATGCGCATTCTGGGCTACACC
BO09419.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5378-PA | 1170 | Rpn7-RA | 1..915 | 17..931 | 4575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:17:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn7-RA | 1393 | CG5378-RA | 133..1047 | 17..931 | 4575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:17:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22461008..22461922 | 931..17 | 4575 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:17:47 has no hits.
BO09419.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:10:06 Download gff for
BO09419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn7-PA | 1..915 | 17..931 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:13:44 Download gff for
BO09419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5378-PA | 1..915 | 17..931 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:30:35 Download gff for
BO09419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn7-RA | 133..1047 | 17..931 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:32:45 Download gff for
BO09419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn7-RA | 133..1047 | 17..931 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:32:45 Download gff for
BO09419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22461008..22461922 | 17..931 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:30:35 Download gff for
BO09419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18286730..18287644 | 17..931 | 100 | | Minus |
BO09419.complete Sequence
1201 bp assembled on 2008-08-15
> BO09419.complete
GAAGTTATCAGTCGACATGCCTGCCGAAAACTTGGAGGAGCAGGGTCTGG
AGAAGAACCCGAACCTGGAGCTGGCCCAGACGAAGTTCCTGCTTACCCTG
GCGGAATACAAGCAGGATGCGGCATTGAAGGCGAAGCTTCTGGAGGCGAT
TCGCACGGAGAATATGGCCCCGTGGTACGAGCACATCTGCTCGGAACTCG
GCTGGACCGTAGACAAGGATCTGCTGGCGCGAATGAAGGAGAACAACCGC
GTAGAGGTGGAGCAGCTAGATGCGGCAATCGAGGATGCGGAGAAGAATCT
GGGCGAGATGGAAGTGCGCGAGGCGAATCTTAAGAAGTCAGAGTACTTGT
GCCGCATCGGCGACAAGGCTGCCGCAGAGACTGCCTTCCGCAAGACCTAC
GAGAAGACCGTTTCCCTGGGTCACCGCCTGGACATCGTGTTCCATCTGAT
CCGCTTGGGACTGTTTTACCTTGACCACGATCTCATCACTCGCAACATCG
ACAAGGCCAAGTATCTGATCGAGGAAGGCGGCGATTGGGACCGACGCAAC
CGGTTGAAGGTCTACCAGGGTGTTTACTCGGTGGCGGTGCGTGACTTCAA
GGCGGCGGCCACGTTCTTCCTGGACACCGTAAGCACCTTCACCTCATACG
AACTGATGGACTACCCCACCTTCGTGCGTTACACCGTTTACGTGGCCATG
ATTGCCCTGCCGCGCAATGAGCTGCGCGACAAAGTGATCAAGGGCTCCGA
AATCCAGGAGGTGCTCCATGGCCTGCCCGACGTGAAACAGTTCCTGTTTT
CCTTGTACAACTGCCAATATGAGAACTTCTACGTACACCTGGCCGGCGTA
GAGAAGCAATTGCGCTTGGACTACCTCATTCATCCCCACTACCGCTACTA
CGTGCGCGAGATGCGCATTCTGGGCTACACCCAGTTGCTGGAGTCGTATC
GCTCCCTCACCCTGCAGTATATGGCCGAGTCGTTCGGCGTAACAGTGGAA
TACATTGACCAGGAGCTGGCACGCTTCATCGCCGCCGGACGGCTGCATGC
CAAGGTGGATCGCGTTGGCGGCATTGTGGAGACCAATCGGCCTGACAACA
AGAACTGGCAGTACCAGGCGACCATCAAGCAGGGCGATCTGCTGCTCAAC
CGCATCCAGAAGTTGAGCCGCGTGATAAACATCGCAAGCTTACTAGACCA
T
BO09419.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:23:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn7-RA | 1170 | CG5378-PA | 1..1167 | 17..1183 | 5835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn7-RA | 1393 | CG5378-RA | 133..1299 | 17..1183 | 5835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22460756..22461922 | 1183..17 | 5835 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:23:42 has no hits.
BO09419.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:45 Download gff for
BO09419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn7-RA | 129..1298 | 17..1187 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:35 Download gff for
BO09419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn7-RA | 133..1299 | 17..1185 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:01 Download gff for
BO09419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn7-RA | 129..1295 | 17..1185 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:59 Download gff for
BO09419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn7-RA | 133..1299 | 17..1185 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:59 Download gff for
BO09419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22460754..22461922 | 17..1185 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:35 Download gff for
BO09419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18286476..18287644 | 17..1185 | 99 | | Minus |
BO09419.pep Sequence
Translation from 16 to 1201
> BO09419.pep
MPAENLEEQGLEKNPNLELAQTKFLLTLAEYKQDAALKAKLLEAIRTENM
APWYEHICSELGWTVDKDLLARMKENNRVEVEQLDAAIEDAEKNLGEMEV
REANLKKSEYLCRIGDKAAAETAFRKTYEKTVSLGHRLDIVFHLIRLGLF
YLDHDLITRNIDKAKYLIEEGGDWDRRNRLKVYQGVYSVAVRDFKAAATF
FLDTVSTFTSYELMDYPTFVRYTVYVAMIALPRNELRDKVIKGSEIQEVL
HGLPDVKQFLFSLYNCQYENFYVHLAGVEKQLRLDYLIHPHYRYYVREMR
ILGYTQLLESYRSLTLQYMAESFGVTVEYIDQELARFIAAGRLHAKVDRV
GGIVETNRPDNKNWQYQATIKQGDLLLNRIQKLSRVINIASLLDH
BO09419.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:33:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn7-PA | 389 | CG5378-PA | 1..389 | 1..389 | 2005 | 100 | Plus |
| CSN1b-PA | 525 | CG3889-PA | 172..492 | 79..395 | 189 | 20.7 | Plus |
