Clone Sequence Records
BO09420.3prime Sequence
872 bp (846 high quality bases) assembled on 2006-01-23
> BO09420.3prime
ATGGTCTAGAAAGCTTGCCAGCTTGAGTTCCTCGGTGTCCGGTAGCTTGC
GGAAAAACCACTGCACATGTTCCTCAGTGACATCGGCCAGCTTGGTTGGC
TGCCACTGGGGCTTCTGATCCTTGTCGATGAGTAGGGCGCGCACTCCCTC
CTTGAAATCACTTCGCTCCAGATGACGCACGGCCAGACGATATTCCATAA
TAAGACACTGAGCCAGCGACAGCTGTGATCCGAGCTCCAACTGACGGAAC
GTAACCTTCATCGAGGTGGGAGACATCTTCGAGAGCGTCTCAAGCGTCTT
CTTGGCCCATTCACTGCCATCGTTCTGCAGATTCTCTAGAATCCCCTCCA
CCGAGTCCGCTGAAAAGTTCTTGTTGATCTGCTCCAGGACAGGCTGCAGC
GAGAAGGGCTTTTCTGGCGGGGAATGGTACTTCTGCAGCAGCTCAGGCAC
ATCATCCGCATCCGGGCAGTTAAGGAGAGCCGTCTCCAGATCAGGGATCT
TGCTGCTCTCGCAGTAGTGCGTAGCAATGCCTGAGTAATAGACATCGGCT
CCGCGCAGTCGATATCCTGTGAGACCCAGATAGAGGCCCAGCTTTCCCTG
CAGTCGAGGCAGGAAGTATGATCCACCCACATCCGGGAAGAGGCCAATCG
CCGTCTCGGGCATGGCGAACAGTGTCCGATCGCTGGCCACCCGGTACTTG
CCATGCACACTCAGACCCACGCCACCGCCCATGGTAATACCGTCAATGAT
GGCGATGTAGGGAATCTTATAGTTTCCGATCAGGGCATTCGTGCTGTACT
CCTCCCGGAAGAAGCTCTTCGACTCATCCGTAGGGCCAGCCTCGACCAGA
GCGCGCACATCTCCACCGGCGC
BO09420.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5044-PA | 1158 | CG5044-RA | 302..1155 | 872..19 | 4270 | 100 | Minus |
CG5044-PB | 1161 | CG5044-RB | 305..1158 | 872..19 | 4270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:06:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5044-RB | 1702 | CG5044-RB | 394..1247 | 872..19 | 4270 | 100 | Minus |
CG5044-RA | 1699 | CG5044-RA | 391..1244 | 872..19 | 4270 | 100 | Minus |
ldlCp-RA | 3015 | CG6177-RA | 2688..2959 | 19..290 | 1360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:06:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15357691..15358274 | 872..289 | 2920 | 100 | Minus |
3R | 32079331 | 3R | 15358537..15358808 | 290..19 | 1360 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:06:23 has no hits.
BO09420.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:10:07 Download gff for
BO09420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5044-PB | 305..1161 | 15..872 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:13:45 Download gff for
BO09420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5044-PB | 305..1161 | 15..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:47:50 Download gff for
BO09420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5044-RA | 391..1247 | 15..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:38:20 Download gff for
BO09420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5044-RA | 391..1247 | 15..872 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:38:20 Download gff for
BO09420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15358539..15358811 | 15..288 | 99 | | Minus |
3R | 15357691..15358274 | 289..872 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:47:50 Download gff for
BO09420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11183413..11183996 | 289..872 | 100 | -> | Minus |
arm_3R | 11184261..11184533 | 15..288 | 99 | | Minus |
BO09420.5prime Sequence
932 bp (806 high quality bases) assembled on 2006-01-23
> BO09420.5prime
GAAGTTATCAGTCGACATGGGCCCAATTCAAAGGTTGGTGTACACATTTG
GTCATCGCACCTGTAGCCAATTGCCGATGATCGGCGGAGCAACGATATCC
CAAACAAAACCAACAACAATGGCTCTCTCCGTTCGCCAATCCTCCTCCTC
CGTGCTGGCCACGGAGTCCTCTAACAAGGGAATGATTATTCTGAACCGGC
CCAAGGCGCTTAACGCCATCAACTTGGAGATGGTACGCAAGATCTACAAG
CACCTGAAGAAGTGCGAGAAGTCCAAGTCGCTGGTGATCATCAAGGGCAC
AGGTGACAAGGCCTTCTGCGCCGGTGGAGATGTGCGCGCTCTGGTCGAGG
CTGGCCCTACGGATGAGTCGAAGAGCTTCTTCCGGGAGGAGTACAGCACG
AATGCCCTGATCGGAAACTATAAGATTCCCTACATCGCCATCATTGACGG
TATTACCATGGGCGGTGGCGTGGGTCTGAGTGTGCATGGCAAGTACCGGG
TGGCCAGCGATCGGACACTGTTCGCCATGCCCGAGACGGCGATTGGCCTC
TTCCCGGATGTGGGTGGATCATACTTCCTGCCTCGACTGCAGGGAAAGCT
GGGCCTCTATCTGGGTCTCACAGGATATCGACTGCGCGGAGCCGATGTCT
ATTACTCAGGCATTGCTACGCACTACTGCGAGAGCAGCAAGATCCCTGAT
CTGGAGACGGCTCTCCTTAACTGCCCGGATGCGGATGATGTGCCTGAGCT
GCTGCAGAAGTACCATTCCCCGCCAGAAAAGCCCTTCTCGCTGCAGCCTG
TCCTGGAGCAGATCAACAAGAACTTTTCAGCGGACTCGGTGGAGGGGATT
CTAGAGAATCTGCAGAACGATGGCAGTGAATGGGCCAGGAAGACGCTTGA
GACGCTCTCGAAGATGTCTCCCACCTCGATGA
BO09420.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5044-PA | 1158 | CG5044-RA | 1..916 | 17..932 | 4555 | 99.8 | Plus |
CG5044-PB | 1161 | CG5044-RB | 6..919 | 19..932 | 4545 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:14:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5044-RA | 1699 | CG5044-RA | 90..1005 | 17..932 | 4565 | 99.9 | Plus |
CG5044-RB | 1702 | CG5044-RB | 95..1008 | 19..932 | 4555 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:14:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15357392..15358274 | 19..901 | 4400 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:14:17 has no hits.
BO09420.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:10:08 Download gff for
BO09420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5044-PA | 1..915 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:13:47 Download gff for
BO09420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5044-PA | 1..915 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:46:48 Download gff for
BO09420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5044-RA | 85..1004 | 12..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:56:05 Download gff for
BO09420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5044-RA | 85..1004 | 12..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:56:05 Download gff for
BO09420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15357384..15358274 | 11..901 | 99 | -> | Plus |
3R | 15358539..15358568 | 902..931 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:46:48 Download gff for
BO09420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11183106..11183996 | 11..901 | 99 | -> | Plus |
arm_3R | 11184261..11184290 | 902..931 | 100 | | Plus |
BO09420.complete Sequence
1189 bp (1189 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631500
> BO09420.complete
GAAGTTATCAGTCGACATGGGCCCAATTCAAAGGTTGGTGTACACATTTG
GTCATCGCACCTGTAGCCAATTGCCGATGATCGGCGGAGCAACGATATCC
CAAACAAAACCAACAACAATGGCTCTCTCCGTTCGCCAATCCTCCTCCTC
CGTGCTGGCCACGGAGTCCTCTAACAAGGGAATGATTATTCTGAACCGGC
CCAAGGCGCTTAACGCCATCAACTTGGAGATGGTACGCAAGATCTACAAG
CACCTGAAGAAGTGCGAGAAGTCCAAGTCGCTGGTGATCATCAAGGGCAC
AGGTGACAAGGCCTTCTGCGCCGGTGGAGATGTGCGCGCTCTGGTCGAGG
CTGGCCCTACGGATGAGTCGAAGAGCTTCTTCCGGGAGGAGTACAGCACG
AATGCCCTGATCGGAAACTATAAGATTCCCTACATCGCCATCATTGACGG
TATTACCATGGGCGGTGGCGTGGGTCTGAGTGTGCATGGCAAGTACCGGG
TGGCCAGCGATCGGACACTGTTCGCCATGCCCGAGACGGCGATTGGCCTC
TTCCCGGATGTGGGTGGATCATACTTCCTGCCTCGACTGCAGGGAAAGCT
GGGCCTCTATCTGGGTCTCACAGGATATCGACTGCGCGGAGCCGATGTCT
ATTACTCAGGCATTGCTACGCACTACTGCGAGAGCAGCAAGATCCCTGAT
CTGGAGACGGCTCTCCTTAACTGCCCGGATGCGGATGATGTGCCTGAGCT
GCTGCAGAAGTACCATTCCCCGCCAGAAAAGCCCTTCTCGCTGCAGCCTG
TCCTGGAGCAGATCAACAAGAACTTTTCAGCGGACTCGGTGGAGGGGATT
CTAGAGAATCTGCAGAACGATGGCAGTGAATGGGCCAAGAAGACGCTTGA
GACGCTCTCGAAGATGTCTCCCACCTCGATGAAGGTTACGTTCCGTCAGT
TGGAGCTCGGATCACAGCTGTCGCTGGCTCAGTGTCTTATTATGGAATAT
CGTCTGGCCGTGCGTCATCTGGAGCGAAGTGATTTCAAGGAGGGAGTGCG
CGCCCTACTCATCGACAAGGATCAGAAGCCCCAGTGGCAGCCAACCAAGC
TGGCCGATGTCACTGAGGAACATGTGCAGTGGTTTTTCCGCAAGCTACCG
GACACCGAGGAACTCAAGCTGGCAAGCTTTCTAGACCAT
BO09420.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:06:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5044-RA | 1158 | CG5044-PA | 1..1155 | 17..1171 | 5775 | 100 | Plus |
CG5044-RB | 1161 | CG5044-PB | 6..1158 | 19..1171 | 5765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5044-RA | 1699 | CG5044-RA | 90..1244 | 17..1171 | 5775 | 100 | Plus |
CG5044-RB | 1702 | CG5044-RB | 95..1247 | 19..1171 | 5765 | 100 | Plus |
ldlCp-RA | 3015 | CG6177-RA | 2688..2959 | 1171..900 | 1360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15357392..15358274 | 19..901 | 4415 | 100 | Plus |
3R | 32079331 | 3R | 15358537..15358808 | 900..1171 | 1360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:06:51 has no hits.
BO09420.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:24 Download gff for
BO09420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5044-RA | 1..1158 | 17..1175 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:55 Download gff for
BO09420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5044-RA | 69..1231 | 12..1175 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:21 Download gff for
BO09420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5044-RA | 90..1244 | 17..1173 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:25 Download gff for
BO09420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5044-RA | 69..1231 | 12..1175 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:57 Download gff for
BO09420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5044-RA | 90..1244 | 17..1173 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:57 Download gff for
BO09420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15357391..15358274 | 17..901 | 99 | -> | Plus |
3R | 15358539..15358808 | 902..1173 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:21 Download gff for
BO09420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11183113..11183996 | 17..901 | 99 | -> | Plus |
arm_3R | 11184261..11184530 | 902..1173 | 99 | | Plus |
BO09420.pep Sequence
Translation from 16 to 1189
> BO09420.pep
MGPIQRLVYTFGHRTCSQLPMIGGATISQTKPTTMALSVRQSSSSVLATE
SSNKGMIILNRPKALNAINLEMVRKIYKHLKKCEKSKSLVIIKGTGDKAF
CAGGDVRALVEAGPTDESKSFFREEYSTNALIGNYKIPYIAIIDGITMGG
GVGLSVHGKYRVASDRTLFAMPETAIGLFPDVGGSYFLPRLQGKLGLYLG
LTGYRLRGADVYYSGIATHYCESSKIPDLETALLNCPDADDVPELLQKYH
SPPEKPFSLQPVLEQINKNFSADSVEGILENLQNDGSEWAKKTLETLSKM
SPTSMKVTFRQLELGSQLSLAQCLIMEYRLAVRHLERSDFKEGVRALLID
KDQKPQWQPTKLADVTEEHVQWFFRKLPDTEELKLASFLDH
BO09420.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5044-PA | 385 | CG5044-PA | 1..385 | 1..385 | 1986 | 100 | Plus |
CG5044-PB | 386 | CG5044-PB | 3..386 | 2..385 | 1981 | 100 | Plus |
CG6543-PA | 295 | CG6543-PA | 45..215 | 47..218 | 205 | 31.6 | Plus |
CG6543-PB | 295 | CG6543-PB | 45..215 | 47..218 | 205 | 31.6 | Plus |
CG8778-PA | 299 | CG8778-PA | 51..225 | 56..228 | 174 | 28.4 | Plus |