Clone BO09420 Report

Search the DGRC for BO09420

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:94
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG5044-RA
Protein status:BO09420.pep: validated full length
Sequenced Size:1189

Clone Sequence Records

BO09420.3prime Sequence

872 bp (846 high quality bases) assembled on 2006-01-23

> BO09420.3prime
ATGGTCTAGAAAGCTTGCCAGCTTGAGTTCCTCGGTGTCCGGTAGCTTGC
GGAAAAACCACTGCACATGTTCCTCAGTGACATCGGCCAGCTTGGTTGGC
TGCCACTGGGGCTTCTGATCCTTGTCGATGAGTAGGGCGCGCACTCCCTC
CTTGAAATCACTTCGCTCCAGATGACGCACGGCCAGACGATATTCCATAA
TAAGACACTGAGCCAGCGACAGCTGTGATCCGAGCTCCAACTGACGGAAC
GTAACCTTCATCGAGGTGGGAGACATCTTCGAGAGCGTCTCAAGCGTCTT
CTTGGCCCATTCACTGCCATCGTTCTGCAGATTCTCTAGAATCCCCTCCA
CCGAGTCCGCTGAAAAGTTCTTGTTGATCTGCTCCAGGACAGGCTGCAGC
GAGAAGGGCTTTTCTGGCGGGGAATGGTACTTCTGCAGCAGCTCAGGCAC
ATCATCCGCATCCGGGCAGTTAAGGAGAGCCGTCTCCAGATCAGGGATCT
TGCTGCTCTCGCAGTAGTGCGTAGCAATGCCTGAGTAATAGACATCGGCT
CCGCGCAGTCGATATCCTGTGAGACCCAGATAGAGGCCCAGCTTTCCCTG
CAGTCGAGGCAGGAAGTATGATCCACCCACATCCGGGAAGAGGCCAATCG
CCGTCTCGGGCATGGCGAACAGTGTCCGATCGCTGGCCACCCGGTACTTG
CCATGCACACTCAGACCCACGCCACCGCCCATGGTAATACCGTCAATGAT
GGCGATGTAGGGAATCTTATAGTTTCCGATCAGGGCATTCGTGCTGTACT
CCTCCCGGAAGAAGCTCTTCGACTCATCCGTAGGGCCAGCCTCGACCAGA
GCGCGCACATCTCCACCGGCGC

BO09420.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5044-PA 1158 CG5044-RA 302..1155 872..19 4270 100 Minus
CG5044-PB 1161 CG5044-RB 305..1158 872..19 4270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5044-RB 1702 CG5044-RB 394..1247 872..19 4270 100 Minus
CG5044-RA 1699 CG5044-RA 391..1244 872..19 4270 100 Minus
ldlCp-RA 3015 CG6177-RA 2688..2959 19..290 1360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15357691..15358274 872..289 2920 100 Minus
3R 32079331 3R 15358537..15358808 290..19 1360 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:06:23 has no hits.

BO09420.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:10:07 Download gff for BO09420.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5044-PB 305..1161 15..872 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:13:45 Download gff for BO09420.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5044-PB 305..1161 15..872 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:47:50 Download gff for BO09420.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5044-RA 391..1247 15..872 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:38:20 Download gff for BO09420.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5044-RA 391..1247 15..872 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:38:20 Download gff for BO09420.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15358539..15358811 15..288 99   Minus
3R 15357691..15358274 289..872 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:47:50 Download gff for BO09420.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11183413..11183996 289..872 100 -> Minus
arm_3R 11184261..11184533 15..288 99   Minus

BO09420.5prime Sequence

932 bp (806 high quality bases) assembled on 2006-01-23

> BO09420.5prime
GAAGTTATCAGTCGACATGGGCCCAATTCAAAGGTTGGTGTACACATTTG
GTCATCGCACCTGTAGCCAATTGCCGATGATCGGCGGAGCAACGATATCC
CAAACAAAACCAACAACAATGGCTCTCTCCGTTCGCCAATCCTCCTCCTC
CGTGCTGGCCACGGAGTCCTCTAACAAGGGAATGATTATTCTGAACCGGC
CCAAGGCGCTTAACGCCATCAACTTGGAGATGGTACGCAAGATCTACAAG
CACCTGAAGAAGTGCGAGAAGTCCAAGTCGCTGGTGATCATCAAGGGCAC
AGGTGACAAGGCCTTCTGCGCCGGTGGAGATGTGCGCGCTCTGGTCGAGG
CTGGCCCTACGGATGAGTCGAAGAGCTTCTTCCGGGAGGAGTACAGCACG
AATGCCCTGATCGGAAACTATAAGATTCCCTACATCGCCATCATTGACGG
TATTACCATGGGCGGTGGCGTGGGTCTGAGTGTGCATGGCAAGTACCGGG
TGGCCAGCGATCGGACACTGTTCGCCATGCCCGAGACGGCGATTGGCCTC
TTCCCGGATGTGGGTGGATCATACTTCCTGCCTCGACTGCAGGGAAAGCT
GGGCCTCTATCTGGGTCTCACAGGATATCGACTGCGCGGAGCCGATGTCT
ATTACTCAGGCATTGCTACGCACTACTGCGAGAGCAGCAAGATCCCTGAT
CTGGAGACGGCTCTCCTTAACTGCCCGGATGCGGATGATGTGCCTGAGCT
GCTGCAGAAGTACCATTCCCCGCCAGAAAAGCCCTTCTCGCTGCAGCCTG
TCCTGGAGCAGATCAACAAGAACTTTTCAGCGGACTCGGTGGAGGGGATT
CTAGAGAATCTGCAGAACGATGGCAGTGAATGGGCCAGGAAGACGCTTGA
GACGCTCTCGAAGATGTCTCCCACCTCGATGA

BO09420.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5044-PA 1158 CG5044-RA 1..916 17..932 4555 99.8 Plus
CG5044-PB 1161 CG5044-RB 6..919 19..932 4545 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG5044-RA 1699 CG5044-RA 90..1005 17..932 4565 99.9 Plus
CG5044-RB 1702 CG5044-RB 95..1008 19..932 4555 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15357392..15358274 19..901 4400 99.9 Plus
Blast to na_te.dros performed on 2015-02-13 09:14:17 has no hits.

BO09420.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:10:08 Download gff for BO09420.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5044-PA 1..915 17..931 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:13:47 Download gff for BO09420.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5044-PA 1..915 17..931 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:46:48 Download gff for BO09420.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5044-RA 85..1004 12..931 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:56:05 Download gff for BO09420.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5044-RA 85..1004 12..931 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:56:05 Download gff for BO09420.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15357384..15358274 11..901 99 -> Plus
3R 15358539..15358568 902..931 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:46:48 Download gff for BO09420.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11183106..11183996 11..901 99 -> Plus
arm_3R 11184261..11184290 902..931 100   Plus

BO09420.complete Sequence

1189 bp (1189 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631500

> BO09420.complete
GAAGTTATCAGTCGACATGGGCCCAATTCAAAGGTTGGTGTACACATTTG
GTCATCGCACCTGTAGCCAATTGCCGATGATCGGCGGAGCAACGATATCC
CAAACAAAACCAACAACAATGGCTCTCTCCGTTCGCCAATCCTCCTCCTC
CGTGCTGGCCACGGAGTCCTCTAACAAGGGAATGATTATTCTGAACCGGC
CCAAGGCGCTTAACGCCATCAACTTGGAGATGGTACGCAAGATCTACAAG
CACCTGAAGAAGTGCGAGAAGTCCAAGTCGCTGGTGATCATCAAGGGCAC
AGGTGACAAGGCCTTCTGCGCCGGTGGAGATGTGCGCGCTCTGGTCGAGG
CTGGCCCTACGGATGAGTCGAAGAGCTTCTTCCGGGAGGAGTACAGCACG
AATGCCCTGATCGGAAACTATAAGATTCCCTACATCGCCATCATTGACGG
TATTACCATGGGCGGTGGCGTGGGTCTGAGTGTGCATGGCAAGTACCGGG
TGGCCAGCGATCGGACACTGTTCGCCATGCCCGAGACGGCGATTGGCCTC
TTCCCGGATGTGGGTGGATCATACTTCCTGCCTCGACTGCAGGGAAAGCT
GGGCCTCTATCTGGGTCTCACAGGATATCGACTGCGCGGAGCCGATGTCT
ATTACTCAGGCATTGCTACGCACTACTGCGAGAGCAGCAAGATCCCTGAT
CTGGAGACGGCTCTCCTTAACTGCCCGGATGCGGATGATGTGCCTGAGCT
GCTGCAGAAGTACCATTCCCCGCCAGAAAAGCCCTTCTCGCTGCAGCCTG
TCCTGGAGCAGATCAACAAGAACTTTTCAGCGGACTCGGTGGAGGGGATT
CTAGAGAATCTGCAGAACGATGGCAGTGAATGGGCCAAGAAGACGCTTGA
GACGCTCTCGAAGATGTCTCCCACCTCGATGAAGGTTACGTTCCGTCAGT
TGGAGCTCGGATCACAGCTGTCGCTGGCTCAGTGTCTTATTATGGAATAT
CGTCTGGCCGTGCGTCATCTGGAGCGAAGTGATTTCAAGGAGGGAGTGCG
CGCCCTACTCATCGACAAGGATCAGAAGCCCCAGTGGCAGCCAACCAAGC
TGGCCGATGTCACTGAGGAACATGTGCAGTGGTTTTTCCGCAAGCTACCG
GACACCGAGGAACTCAAGCTGGCAAGCTTTCTAGACCAT

BO09420.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5044-RA 1158 CG5044-PA 1..1155 17..1171 5775 100 Plus
CG5044-RB 1161 CG5044-PB 6..1158 19..1171 5765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5044-RA 1699 CG5044-RA 90..1244 17..1171 5775 100 Plus
CG5044-RB 1702 CG5044-RB 95..1247 19..1171 5765 100 Plus
ldlCp-RA 3015 CG6177-RA 2688..2959 1171..900 1360 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15357392..15358274 19..901 4415 100 Plus
3R 32079331 3R 15358537..15358808 900..1171 1360 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:06:51 has no hits.

BO09420.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:24 Download gff for BO09420.complete
Subject Subject Range Query Range Percent Splice Strand
CG5044-RA 1..1158 17..1175 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:55 Download gff for BO09420.complete
Subject Subject Range Query Range Percent Splice Strand
CG5044-RA 69..1231 12..1175 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:21 Download gff for BO09420.complete
Subject Subject Range Query Range Percent Splice Strand
CG5044-RA 90..1244 17..1173 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:25 Download gff for BO09420.complete
Subject Subject Range Query Range Percent Splice Strand
CG5044-RA 69..1231 12..1175 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:57 Download gff for BO09420.complete
Subject Subject Range Query Range Percent Splice Strand
CG5044-RA 90..1244 17..1173 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:57 Download gff for BO09420.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15357391..15358274 17..901 99 -> Plus
3R 15358539..15358808 902..1173 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:21 Download gff for BO09420.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11183113..11183996 17..901 99 -> Plus
arm_3R 11184261..11184530 902..1173 99   Plus

BO09420.pep Sequence

Translation from 16 to 1189

> BO09420.pep
MGPIQRLVYTFGHRTCSQLPMIGGATISQTKPTTMALSVRQSSSSVLATE
SSNKGMIILNRPKALNAINLEMVRKIYKHLKKCEKSKSLVIIKGTGDKAF
CAGGDVRALVEAGPTDESKSFFREEYSTNALIGNYKIPYIAIIDGITMGG
GVGLSVHGKYRVASDRTLFAMPETAIGLFPDVGGSYFLPRLQGKLGLYLG
LTGYRLRGADVYYSGIATHYCESSKIPDLETALLNCPDADDVPELLQKYH
SPPEKPFSLQPVLEQINKNFSADSVEGILENLQNDGSEWAKKTLETLSKM
SPTSMKVTFRQLELGSQLSLAQCLIMEYRLAVRHLERSDFKEGVRALLID
KDQKPQWQPTKLADVTEEHVQWFFRKLPDTEELKLASFLDH

BO09420.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5044-PA 385 CG5044-PA 1..385 1..385 1986 100 Plus
CG5044-PB 386 CG5044-PB 3..386 2..385 1981 100 Plus
CG6543-PA 295 CG6543-PA 45..215 47..218 205 31.6 Plus
CG6543-PB 295 CG6543-PB 45..215 47..218 205 31.6 Plus
CG8778-PA 299 CG8778-PA 51..225 56..228 174 28.4 Plus