Clone Sequence Records
BO09426.3prime Sequence
815 bp (814 high quality bases) assembled on 2006-01-23
> BO09426.3prime
ATGGTCTAGAAAGCTTGCGTAGCAACACCAGCTGGGCCTCTCCACCTCGC
CGAGGGCGATGTGCTCGATGCTCCACGGCGCCGTTTCCAGCCGCCCCACG
CCATTGGTCTTCACGTCCTCGCCCTCCACCGCCAAGCCAATGTCCACGTA
GGGCAGACGGAACGCTGCATTTCCGGAGCTCCTGGCCAGGGCGGCCACCG
TGTGACTGAAGGCAGTGTTGGTGTTGGTGTAGGCCAGCGAATCAGTCGAC
TGGAAGGAGCGCAGCGACGGACTCTTGCCCTCGTCTGCCAGGCGAACCAG
TCCCTGGGCAGTGGATATGAACACTTGCTCCAGTCCCTGATCCGTTTCGG
TGGAGGTTTCGAAGTAGGTGGCCCCAATGGAGGTGGCGAACACGAAGGCC
TCCTCCCGGGAGACCGCTCGCTGCGCCTGCATGTCCATCTTGTTACCCAC
CAGCGTCAGTATCATCGGGTCCTGGACATTGCGGTGCAGCTCCTGAATCC
ACGACTTGATCTCCGTGAATGTCTTGTACTGCGTTAGATCGAACACCAGA
ATGGCGGCGTTGGCATTCCTGTAGTACATGGGCGCCACCGCCCGATACCG
CTCCTGGCCAGCTGTATCCCAGATTTGCAATTTAATTTTGACCTCGTCCA
GGATGATGTTGCACGTGAAGAAGGACACGGCTATCGTGGGTACCTCGCTT
TCCTTGCGGTGCAGCGTGTTCTTTATGTAGCGGATGACCAAACGTGTTTT
GCCCACACCTCGCGAGCCCAGAACAAGCACTTTGCCCTCGATTCCGCGCA
TGTCGACTGATAACT
BO09426.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3870-PA | 786 | chrw-RA | 1..783 | 801..19 | 3915 | 100 | Minus |
| CG3320-PB | 441 | Rab1-RB | 178..215 | 636..599 | 140 | 94.7 | Minus |
| CG3320-PA | 618 | Rab1-RA | 178..215 | 636..599 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:47:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RabX1-RA | 1648 | CG3870-RA | 340..1126 | 805..19 | 3920 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:47:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23520361..23520966 | 19..624 | 3030 | 100 | Plus |
| 2R | 25286936 | 2R | 23522059..23522194 | 625..760 | 680 | 100 | Plus |
| 2R | 25286936 | 2R | 23523226..23523274 | 757..805 | 230 | 98 | Plus |
Blast to na_te.dros performed on 2015-02-03 08:47:28 has no hits.
BO09426.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:10:19 Download gff for
BO09426.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chrw-PA | 1..786 | 15..801 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:14:02 Download gff for
BO09426.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3870-PA | 1..786 | 15..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:41:35 Download gff for
BO09426.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RabX1-RA | 336..1135 | 7..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:55:54 Download gff for
BO09426.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RabX1-RA | 336..1135 | 7..810 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:55:54 Download gff for
BO09426.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23520352..23520966 | 7..624 | 99 | <- | Plus |
| 2R | 23522059..23522192 | 625..758 | 100 | <- | Plus |
| 2R | 23523228..23523278 | 759..810 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:41:35 Download gff for
BO09426.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19407875..19408489 | 7..624 | 99 | <- | Plus |
| arm_2R | 19409582..19409715 | 625..758 | 100 | <- | Plus |
| arm_2R | 19410751..19410801 | 759..810 | 94 | | Plus |
BO09426.5prime Sequence
815 bp (775 high quality bases) assembled on 2006-01-23
> BO09426.5prime
GAAGTTATCAGTCGACATGCGCGGAATCGAGGGCAAAGTGCTTGTTCTGG
GCTCGCGAGGTGTGGGCAAAACACGTTTGGTCATCCGCTACATAAAGAAC
ACGCTGCACCGCAAGGAAAGCGAGGTACCCACGATAGCCGTGTCCTTCTT
CACGTGCAACATCATCCTGGACGAGGTCAAAATTAAATTGCAAATCTGGG
ATACAGCTGGCCAGGAGCGGTATCGGGCGGTGGCGCCCATGTACTACAGG
AATGCCAACGCCGCCATTCTGGTGTTCGATCTAACGCAGTACAAGACATT
CACGGAGATCAAGTCGTGGATTCAGGAGCTGCACCGCAATGTCCAGGACC
CGATGATACTGACGCTGGTGGGTAACAAGATGGACATGCAGGCGCAGCGA
GCGGTCTCCCGGGAGGAGGCCTTCGTGTTCGCCACCTCCATTGGGGCCAC
CTACTTCGAAACCTCCACCGAAACGGATCAGGGACTGGAGCAAGTGTTCA
TATCCACTGCCCAGGGACTGGTTCGCCTGGCAGACGAGGGCAAGAGTCCG
TCGCTGCGCTCCTTCCAGTCGACTGATTCGCTGGCCTACACCAACACCAA
CACTGCCTTCAGTCACACGGTGGCCGCCCTGGCCAGGAGCTCCGGAAATG
CAGCGTTCCGTCTGCCCTACGTGGACATTGGCTTGGCGGTGGAGGGCGAG
GACGTGAAGACCAATGGCGTGNGGCGGCTGGAAACGGCGCCGTGGAGCAT
CGAGCACATCGCCCTCGGCGAGGTGGAGAGGCCCAGCTGGTGTTGCTACG
CAAGCTTTCTAGACC
BO09426.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:41:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3870-PA | 786 | chrw-RA | 1..783 | 17..799 | 3896 | 99.8 | Plus |
| CG3320-PB | 441 | Rab1-RB | 178..215 | 182..219 | 140 | 94.7 | Plus |
| CG3320-PA | 618 | Rab1-RA | 178..215 | 182..219 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:02:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RabX1-RA | 1648 | CG3870-RA | 340..1126 | 13..799 | 3909 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:02:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23520361..23520966 | 799..194 | 3019 | 99.8 | Minus |
| 2R | 25286936 | 2R | 23522059..23522194 | 193..58 | 680 | 100 | Minus |
| 2R | 25286936 | 2R | 23523226..23523274 | 61..13 | 230 | 98 | Minus |
Blast to na_te.dros performed on 2015-02-02 12:02:45 has no hits.
BO09426.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:10:20 Download gff for
BO09426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chrw-PA | 1..786 | 17..803 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:14:04 Download gff for
BO09426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3870-PA | 1..786 | 17..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:21:45 Download gff for
BO09426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RabX1-RA | 336..1135 | 8..811 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:35:36 Download gff for
BO09426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RabX1-RA | 336..1135 | 8..811 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:35:36 Download gff for
BO09426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23520352..23520966 | 194..811 | 99 | <- | Minus |
| 2R | 23522059..23522192 | 60..193 | 100 | <- | Minus |
| 2R | 23523228..23523278 | 8..59 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:21:45 Download gff for
BO09426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19407875..19408489 | 194..811 | 99 | <- | Minus |
| arm_2R | 19409582..19409715 | 60..193 | 100 | <- | Minus |
| arm_2R | 19410751..19410801 | 8..59 | 94 | | Minus |
BO09426.complete Sequence
817 bp (817 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631501
> BO09426.complete
GAAGTTATCAGTCGACATGCGCGGAATCGAGGGCAAAGTGCTTGTTCTGG
GCTCGCGAGGTGTGGGCAAAACACGTTTGGTCATCCGCTACATAAAGAAC
ACGCTGCACCGCAAGGAAAGCGAGGTACCCACGATAGCCGTGTCCTTCTT
CACGTGCAACATCATCCTGGACGAGGTCAAAATTAAATTGCAAATCTGGG
ATACAGCTGGCCAGGAGCGGTATCGGGCGGTGGCGCCCATGTACTACAGG
AATGCCAACGCCGCCATTCTGGTGTTCGATCTAACGCAGTACAAGACATT
CACGGAGATCAAGTCGTGGATTCAGGAGCTGCACCGCAATGTCCAGGACC
CGATGATACTGACGCTGGTGGGTAACAAGATGGACATGCAGGCGCAGCGA
GCGGTCTCCCGGGAGGAGGCCTTCGTGTTCGCCACCTCCATTGGGGCCAC
CTACTTCGAAACCTCCACCGAAACGGATCAGGGACTGGAGCAAGTGTTCA
TATCCACTGCCCAGGGACTGGTTCGCCTGGCAGACGAGGGCAAGAGTCCG
TCGCTGCGCTCCTTCCAGTCGACTGATTCGCTGGCCTACACCAACACCAA
CACTGCCTTCAGTCACACGGTGGCCGCCCTGGCCAGGAGCTCCGGAAATG
CAGCGTTCCGTCTGCCCTACGTGGACATTGGCTTGGCGGTGGAGGGCGAG
GACGTGAAGACCAATGGCGTGGGGCGGCTGGAAACGGCGCCGTGGAGCAT
CGAGCACATCGCCCTCGGCGAGGTGGAGAGGCCCAGCTGGTGTTGCTACG
CAAGCTTTCTAGACCAT
BO09426.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:49:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RabX1-RA | 786 | CG3870-PA | 1..783 | 17..799 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:49:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RabX1-RA | 1648 | CG3870-RA | 340..1126 | 13..799 | 3920 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:49:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23520361..23520966 | 799..194 | 3030 | 100 | Minus |
| 2R | 25286936 | 2R | 23522059..23522194 | 193..58 | 680 | 100 | Minus |
| 2R | 25286936 | 2R | 23523226..23523274 | 61..13 | 230 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:49:02 has no hits.
BO09426.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:10 Download gff for
BO09426.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chrw-RA | 1..786 | 17..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:38 Download gff for
BO09426.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chrw-RA | 296..1095 | 8..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:12 Download gff for
BO09426.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RabX1-RA | 344..1126 | 17..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:10 Download gff for
BO09426.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chrw-RA | 296..1095 | 8..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:07 Download gff for
BO09426.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RabX1-RA | 344..1126 | 17..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:07 Download gff for
BO09426.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23520359..23520966 | 194..801 | 99 | <- | Minus |
| 2R | 23522059..23522192 | 60..193 | 100 | <- | Minus |
| 2R | 23523228..23523270 | 17..59 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:12 Download gff for
BO09426.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19407882..19408489 | 194..801 | 99 | <- | Minus |
| arm_2R | 19409582..19409715 | 60..193 | 100 | <- | Minus |
| arm_2R | 19410751..19410793 | 17..59 | 100 | | Minus |
BO09426.pep Sequence
Translation from 16 to 817
> BO09426.pep
MRGIEGKVLVLGSRGVGKTRLVIRYIKNTLHRKESEVPTIAVSFFTCNII
LDEVKIKLQIWDTAGQERYRAVAPMYYRNANAAILVFDLTQYKTFTEIKS
WIQELHRNVQDPMILTLVGNKMDMQAQRAVSREEAFVFATSIGATYFETS
TETDQGLEQVFISTAQGLVRLADEGKSPSLRSFQSTDSLAYTNTNTAFSH
TVAALARSSGNAAFRLPYVDIGLAVEGEDVKTNGVGRLETAPWSIEHIAL
GEVERPSWCCYASFLDH
BO09426.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RabX1-PA | 261 | CG3870-PA | 1..261 | 1..261 | 1332 | 100 | Plus |
| Rab5-PI | 219 | CG3664-PI | 31..215 | 7..195 | 345 | 36.5 | Plus |
| Rab5-PH | 219 | CG3664-PH | 31..215 | 7..195 | 345 | 36.5 | Plus |
| Rab5-PG | 219 | CG3664-PG | 31..215 | 7..195 | 345 | 36.5 | Plus |
| Rab5-PE | 219 | CG3664-PE | 31..215 | 7..195 | 345 | 36.5 | Plus |
