Clone Sequence Records
BO09433.3prime Sequence
837 bp (836 high quality bases) assembled on 2006-01-23
> BO09433.3prime
ATGGTCTAGAAAGCTTGCGATCATGATTATATTGTCGCGCTCCAGCGTCA
ATTCTGCTTCGCGCTTGGCATCCTCTTCAGACCACTCTCCGCACTTGCTC
AGCACGTCAGTTTCCCGCGGAGGTTCGGTCTCTTTGTCGTTGGCAGCCAG
TTTGGTGAACATGTTGGCATAGAGTTTCTTCTCCTTGTTCTTGCTCTCTT
TGAGTTTCTGCTTGCAGATGATCACTTGGTTGGCAGCCGCTTTGTTACCA
GGCTCCAATTGGATGACCTTTTGGAAGTCCTCTAGTGCATCTTCCAGCTC
ATTGATAGTCAAGTTGCATTGGCCACGACGGTAGAGAGCCTTTACATTGT
TCTTATCCAAAGCCAAAACCTCATTACACTCCTGCTTGGCTTCGAAGTGA
TCGTTGGACTTTTGGTGGCACAGAGCAATGTTGCTGTGCGTGGCCACCTT
AATCTTCTTCACCTCCTCATTGGTATGGACAGTGGTGGGCAAAATGTTCT
TGCACTTGGTGTACATCTTAATGGCTAGAGCCCAGTTCTCCTTCTTAAAG
TAGTTGGTGCCCTTCTCCTTGTACACCTTGGCCTCAGCCAGGCGCTCCTC
GTCGCTCAGTTTCCACTCCTCCAGTCCCTTGCCGCAGTCGACGAGCTTTA
CTGTGTACTCCACTGTGGCATTTGGTGGAATCTTAAACTCCTCATTGCCC
TTTGCTCCAAATGCATACTTGGCCTGGATCTTGATTCTGGAGGTCTCGCC
TACGTTCATCTTCTCCAGGGCAATTTCGACACCATCGATAATGCCGATGG
CCTTACCCTCGCCATAATCAAACTCCACATCGCGATC
BO09433.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:42:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4535-PA | 1320 | FKBP59-RA | 499..1317 | 837..19 | 4070 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:48:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FKBP59-RB | 1587 | CG4535-RB | 637..1455 | 837..19 | 4080 | 99.9 | Minus |
FKBP59-RA | 1494 | CG4535-RA | 544..1362 | 837..19 | 4080 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:48:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9889046..9889405 | 738..379 | 1800 | 100 | Minus |
2L | 23513712 | 2L | 9889630..9889769 | 269..130 | 685 | 99.3 | Minus |
2L | 23513712 | 2L | 9889458..9889572 | 380..266 | 575 | 100 | Minus |
2L | 23513712 | 2L | 9889875..9889987 | 131..19 | 565 | 100 | Minus |
2L | 23513712 | 2L | 9888885..9888985 | 837..737 | 505 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 03:48:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 1157..1223 | 186..120 | 110 | 62.7 | Minus |
BO09433.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:10:32 Download gff for
BO09433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4535-PA | 499..1320 | 15..837 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:14:20 Download gff for
BO09433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4535-PA | 499..1320 | 15..837 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:43:05 Download gff for
BO09433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FKBP59-RA | 544..1367 | 11..837 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:04 Download gff for
BO09433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FKBP59-RA | 544..1367 | 11..837 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:04 Download gff for
BO09433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9888885..9888985 | 737..837 | 100 | -> | Minus |
2L | 9889048..9889405 | 379..736 | 100 | -> | Minus |
2L | 9889460..9889570 | 268..378 | 100 | -> | Minus |
2L | 9889632..9889769 | 130..267 | 99 | -> | Minus |
2L | 9889877..9889992 | 11..129 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:43:05 Download gff for
BO09433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9888885..9888985 | 737..837 | 100 | -> | Minus |
arm_2L | 9889048..9889405 | 379..736 | 100 | -> | Minus |
arm_2L | 9889460..9889570 | 268..378 | 100 | -> | Minus |
arm_2L | 9889632..9889769 | 130..267 | 99 | -> | Minus |
arm_2L | 9889877..9889992 | 11..129 | 96 | | Minus |
BO09433.5prime Sequence
894 bp (786 high quality bases) assembled on 2006-01-23
> BO09433.5prime
GAAGTTATCAGTCGACATGCCGGAAGGGAATAAAATCGACTTGTCCGGGG
ACGGTGGCGTCCTAAAGGAGATCCTGAAAGAGGGCACGGGCACAGAGACG
CCGCACAGCGGATGCACTGTGTCCCTGCACTATACGGGTCGCCTGGTCGA
TGGCACGGAATTCGATTCCAGCCTCAGTCGCAATGAGCCCTTCGAATTTT
CGCTCGGCAAAGGCAATGTGATCAAGGCCTTCGACATGGGAGTTGCCACC
ATGAAGCTCGGCGAGCGCTGCTTCCTAACATGTGCTCCAAACTACGCTTA
CGGAGCTGCCGGCAGCCCGCCAGCCATTCCGCCGGATGCTACTCTGATTT
TTGAGCTGGAGATGCTCGGCTGGAAGGGCGAGGATTTGAGTCCCAACCAG
GACGGAAGTATTGACCGCACCATTTTGGAAGCCAGCGATAAAAAGCGCAC
TCCCAGCGATGGCGCCTTTGTCAAGGCTCACATTTCTGGTAGTTTCGAGG
GCCGCGTGTTTGAGGATCGCGATGTGGAGTTTGATTATGGCGAGGGTAAG
GCCATCGGCATTATCGATGGTGTCGAAATTGCCCTGGAGAAGATGAACGT
AGGCGAGACCTCCAGAATCAAGATCCAGGCCAAGTATGCATTTGGAGCAA
AGGGCAATGAGGAGTTTAAGATTCCACCAAATGCCACAGTGGAGTACACA
GTAAAGCTCGTCGACTGCGGCAAGGGACTGGAGGAGTGGAAACTGAGCGA
CGAGGAGCGCCTGGCTGAGGCCAAGGTGTACAAGGAGAAGGGCACCAACT
ACTTTAAGAAGGAGAACTGGGCTCTAGCCATTAAGATGTACACCAAGTGC
AAGAACATTTTGCCCCACACTGTCCATACCAATGAAGAGGTGAA
BO09433.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:42:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4535-PA | 1320 | FKBP59-RA | 1..878 | 17..894 | 4315 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:25:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FKBP59-RB | 1587 | CG4535-RB | 139..1016 | 17..894 | 4345 | 99.7 | Plus |
FKBP59-RA | 1494 | CG4535-RA | 46..923 | 17..894 | 4345 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:25:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9889046..9889326 | 614..894 | 1360 | 98.9 | Plus |
2L | 23513712 | 2L | 9888143..9888339 | 17..213 | 985 | 100 | Plus |
2L | 23513712 | 2L | 9888402..9888546 | 211..355 | 725 | 100 | Plus |
2L | 23513712 | 2L | 9888846..9888985 | 476..615 | 700 | 100 | Plus |
2L | 23513712 | 2L | 9888665..9888787 | 354..476 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:25:10 has no hits.
BO09433.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:10:33 Download gff for
BO09433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4535-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:14:21 Download gff for
BO09433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4535-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:32:33 Download gff for
BO09433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FKBP59-RA | 37..923 | 9..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:48:14 Download gff for
BO09433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FKBP59-RA | 37..923 | 9..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:48:14 Download gff for
BO09433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9888134..9888338 | 9..212 | 98 | -> | Plus |
2L | 9888404..9888546 | 213..355 | 100 | -> | Plus |
2L | 9888667..9888787 | 356..476 | 100 | -> | Plus |
2L | 9888847..9888985 | 477..615 | 100 | -> | Plus |
2L | 9889048..9889326 | 616..894 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:32:33 Download gff for
BO09433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9888134..9888338 | 9..212 | 98 | -> | Plus |
arm_2L | 9888404..9888546 | 213..355 | 100 | -> | Plus |
arm_2L | 9888667..9888787 | 356..476 | 100 | -> | Plus |
arm_2L | 9888847..9888985 | 477..615 | 100 | -> | Plus |
arm_2L | 9889048..9889326 | 616..894 | 98 | | Plus |
BO09433.complete Sequence
1351 bp assembled on 2007-10-17
GenBank Submission: FJ631502
> BO09433.complete
GAAGTTATCAGTCGACATGCCGGAAGGGAATAAAATCGACTTGTCCGGGG
ACGGTGGCGTCCTAAAGGAGATCCTGAAAGAGGGCACGGGCACAGAGACG
CCGCACAGCGGATGCACTGTGTCCCTGCACTATACGGGTCGCCTGGTCGA
TGGCACGGAATTCGATTCCAGCCTCAGTCGCAATGAGCCCTTCGAATTTT
CGCTCGGCAAAGGCAATGTGATCAAGGCCTTCGACATGGGAGTTGCCACC
ATGAAGCTCGGCGAGCGCTGCTTCCTAACATGTGCTCCAAACTACGCTTA
CGGAGCTGCCGGCAGCCCGCCAGCCATTCCGCCGGATGCTACTCTGATTT
TTGAGCTGGAGATGCTCGGCTGGAAGGGCGAGGATTTGAGTCCCAACCAG
GACGGAAGTATTGACCGCACCATTTTGGAAGCCAGCGATAAAAAGCGCAC
TCCCAGCGATGGCGCCTTTGTCAAGGCTCACATTTCTGGTAGTTTCGAGG
GCCGCGTGTTTGAGGATCGCGATGTGGAGTTTGATTATGGCGAGGGTAAG
GCCATCGGCATTATCGATGGTGTCGAAATTGCCCTGGAGAAGATGAACGT
AGGCGAGACCTCCAGAATCAAGATCCAGGCCAAGTATGCATTTGGAGCAA
AGGGCAATGAGGAGTTTAAGATTCCACCAAATGCCACAGTGGAGTACACA
GTAAAGCTCGTCGACTGCGGCAAGGGACTGGAGGAGTGGAAACTGAGCGA
CGAGGAGCGCCTGGCTGAGGCCAAGGTGTACAAGGAGAAGGGCACCAACT
ACTTTAAGAAGGAGAACTGGGCTCTAGCCATTAAGATGTACACCAAGTGC
AAGAACATTTTGCCCACCACTGTCCATACCAATGAGGAGGTGAAGAAGAT
TAAGGTGGCCACGCACAGCAACATTGCTCTGTGCCACCAAAAGTCCAACG
ATCACTTCGAAGCCAAGCAGGAGTGTAATGAGGTTTTGGCTTTGGATAAG
AACAATGTAAAGGCTCTCTACCGTCGTGGCCAATGCAACTTGACTATCAA
TGAGCTGGAAGATGCACTAGAGGACTTCCAAAAGGTCATCCAATTGGAGC
CTGGTAACAAAGCGGCTGCCAACCAAGTGATCATCTGCAAGCAGAAACTC
AAAGAGAGCAAGAACAAGGAGAAGAAACTCTATGCCAACATGTTCACCAA
ACTGGCTGCCAACGACAAAGAGACCGAACCTCCGCGGGAAACTGACGTGC
TGAGCAAGTGCGGAGAGTGGTCTGAAGAGGATGCCAAGCGCGAAGCAGAA
TTGACGCTGGAGCGCGACAATATAATCATGATCGCAAGCTTTCTAGACCA
T
BO09433.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:51:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FKBP59-RB | 1320 | CG4535-PB | 1..1317 | 17..1333 | 6570 | 99.9 | Plus |
FKBP59-RA | 1320 | CG4535-PA | 1..1317 | 17..1333 | 6570 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:51:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FKBP59-RB | 1587 | CG4535-RB | 139..1455 | 17..1333 | 6570 | 99.9 | Plus |
FKBP59-RA | 1494 | CG4535-RA | 46..1362 | 17..1333 | 6570 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:51:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9889046..9889405 | 614..973 | 1800 | 100 | Plus |
2L | 23513712 | 2L | 9888143..9888339 | 17..213 | 985 | 100 | Plus |
2L | 23513712 | 2L | 9888402..9888546 | 211..355 | 725 | 100 | Plus |
2L | 23513712 | 2L | 9888846..9888985 | 476..615 | 700 | 100 | Plus |
2L | 23513712 | 2L | 9889630..9889769 | 1083..1222 | 685 | 99.3 | Plus |
2L | 23513712 | 2L | 9888665..9888787 | 354..476 | 615 | 100 | Plus |
2L | 23513712 | 2L | 9889458..9889572 | 972..1086 | 575 | 100 | Plus |
2L | 23513712 | 2L | 9889875..9889987 | 1221..1333 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:51:42 has no hits.
BO09433.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:45 Download gff for
BO09433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FKBP59-RA | 1..1320 | 17..1337 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:08 Download gff for
BO09433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FKBP59-RA | 101..1431 | 9..1341 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:53 Download gff for
BO09433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FKBP59-RA | 46..1362 | 17..1335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:05 Download gff for
BO09433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FKBP59-RA | 110..1426 | 17..1335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:47 Download gff for
BO09433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FKBP59-RA | 46..1362 | 17..1335 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:47 Download gff for
BO09433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9889877..9889987 | 1223..1335 | 98 | | Plus |
2L | 9889048..9889405 | 616..973 | 100 | -> | Plus |
2L | 9889460..9889570 | 974..1084 | 100 | -> | Plus |
2L | 9889632..9889769 | 1085..1222 | 99 | -> | Plus |
2L | 9888143..9888338 | 17..212 | 100 | -> | Plus |
2L | 9888404..9888546 | 213..355 | 100 | -> | Plus |
2L | 9888667..9888787 | 356..476 | 100 | -> | Plus |
2L | 9888847..9888985 | 477..615 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:53 Download gff for
BO09433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9888667..9888787 | 356..476 | 100 | -> | Plus |
arm_2L | 9888847..9888985 | 477..615 | 100 | -> | Plus |
arm_2L | 9888143..9888338 | 17..212 | 100 | -> | Plus |
arm_2L | 9888404..9888546 | 213..355 | 100 | -> | Plus |
arm_2L | 9889048..9889405 | 616..973 | 100 | -> | Plus |
arm_2L | 9889460..9889570 | 974..1084 | 100 | -> | Plus |
arm_2L | 9889632..9889769 | 1085..1222 | 99 | -> | Plus |
arm_2L | 9889877..9889987 | 1223..1335 | 98 | | Plus |
BO09433.pep Sequence
Translation from 16 to 1351
> BO09433.pep
MPEGNKIDLSGDGGVLKEILKEGTGTETPHSGCTVSLHYTGRLVDGTEFD
SSLSRNEPFEFSLGKGNVIKAFDMGVATMKLGERCFLTCAPNYAYGAAGS
PPAIPPDATLIFELEMLGWKGEDLSPNQDGSIDRTILEASDKKRTPSDGA
FVKAHISGSFEGRVFEDRDVEFDYGEGKAIGIIDGVEIALEKMNVGETSR
IKIQAKYAFGAKGNEEFKIPPNATVEYTVKLVDCGKGLEEWKLSDEERLA
EAKVYKEKGTNYFKKENWALAIKMYTKCKNILPTTVHTNEEVKKIKVATH
SNIALCHQKSNDHFEAKQECNEVLALDKNNVKALYRRGQCNLTINELEDA
LEDFQKVIQLEPGNKAAANQVIICKQKLKESKNKEKKLYANMFTKLAAND
KETEPPRETDVLSKCGEWSEEDAKREAELTLERDNIIMIASFLDH
BO09433.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:43:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FKBP59-PB | 439 | CG4535-PB | 1..439 | 1..439 | 2295 | 100 | Plus |
FKBP59-PA | 439 | CG4535-PA | 1..439 | 1..439 | 2295 | 100 | Plus |
FK506-bp2-PA | 108 | CG11001-PA | 2..105 | 14..117 | 283 | 50 | Plus |
CG5482-PD | 397 | CG5482-PD | 67..359 | 132..403 | 239 | 25.1 | Plus |
CG5482-PC | 397 | CG5482-PC | 67..359 | 132..403 | 239 | 25.1 | Plus |