Clone Sequence Records
BO09446.3prime Sequence
959 bp (811 high quality bases) assembled on 2006-01-23
> BO09446.3prime
ATGGTCTAGAAAGCTTGCGGCCATCGAAGACGTGGTTGGTACGTCGTCCA
GGTTAATAAGGGTCGCCTCGACACCTCCGCTGGAGGAGGATTCAGCACCT
TGACCCGGAACATTACCCTCCTTGGGCGGTGGCGCCGGCATTGGTATTGC
AATCGGGCTCATGGTGCTGATCATGCGCGGCTCCGCCCGCGACGTTGTGA
TGGGCAGCTGGCTGGCGCTGCCGGTGGACTTCAGGAAGTCGGGCTGCGGC
ATCTGAGCAGGACCGGGCCCATGACTGTGTCCCGCTCCATGACTATGACT
ATGGCCCGCTCCATGGCTGTGACTGTGGCCAGTGCCGTGACTGTGATGCT
TTTGCTGCTGGTGCGGCGCGTGCTGGTGATGATGATGTTGCAGCTGCTGC
TGCTGCGGGAACGACTTGGGCAGCTGGGCGTGGCGGCTGGAGTCCGTGGC
CTTTAGGCGCTCACTTAGCGCCTTCAAGGCAATTTGTCGCCTTCTCTCAA
TGTCATGCGGATCCACTCCCGGCATTTGCACCGATACCGACGTCAGGCTG
GCCGTAGATATCGTCCGCAGCGGCGTGGGCGTCTTGACCACGCCCGCCCG
CAAACAGCAATTGTAAATGGGATTAACCAATACGCTGATAAACGGCTGTG
ATACGTTTGGGAAGAAGCTGACGAACGTGAAGCTCTCCGAGCTGTCGCCA
CGCCCATTGGGATGGTGTTGATAGAAGCGGAGATAGATCCAAGAAACCAG
CGATCCGGAGGCGAACATAGCCGGATAAGTGCCATCTAGCAGGCCAATGG
CCCACAGTATGATGGCCATGATGAGCACCGTGAGGGGAACGTTCCTATTG
GTCAGACGTCCGTAGCGCGTCTTGAAGATCAGGTGATCGGGCATTATCTG
GCGTACGGCTACGCAGATGCCAGCCACGTATCCCGGCAGGCCGTGAATGT
GCACCTCGA
BO09446.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:42:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9536-PA | 1353 | CG9536-RA | 410..1350 | 959..19 | 4655 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:47:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9536-RB | 1888 | CG9536-RB | 640..1580 | 959..19 | 4675 | 99.8 | Minus |
CG9536-RA | 1944 | CG9536-RA | 640..1580 | 959..19 | 4675 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:47:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6474802..6475271 | 19..488 | 2350 | 100 | Plus |
2L | 23513712 | 2L | 6475446..6475804 | 488..846 | 1795 | 100 | Plus |
2L | 23513712 | 2L | 6476221..6476336 | 844..959 | 550 | 98.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:47:17 has no hits.
BO09446.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:10:54 Download gff for
BO09446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9536-PA | 411..1353 | 18..958 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:14:51 Download gff for
BO09446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9536-PA | 411..1353 | 18..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:42:48 Download gff for
BO09446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9536-RA | 641..1580 | 19..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:43 Download gff for
BO09446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9536-RA | 641..1580 | 19..958 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:43 Download gff for
BO09446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6474802..6475270 | 19..487 | 100 | <- | Plus |
2L | 6475446..6475802 | 488..844 | 100 | <- | Plus |
2L | 6476222..6476335 | 845..958 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:42:48 Download gff for
BO09446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6474802..6475270 | 19..487 | 100 | <- | Plus |
arm_2L | 6475446..6475802 | 488..844 | 100 | <- | Plus |
arm_2L | 6476222..6476335 | 845..958 | 98 | | Plus |
BO09446.5prime Sequence
887 bp (799 high quality bases) assembled on 2006-01-23
> BO09446.5prime
GAAGTTATCAGTCGACATGTCAGCTCAACTGGCCAGAAACTGGCCGTACA
TCTGGCAACAGCTCAATGCTCTGCTGCACAACACCTCGCCGGTCATAACG
CTCATCTGCGTGGTGACCACGTTCGGCTACCTGCTATCCTTCTCGGAGAC
GGCCATCCTGCTGCTCAGCGTCACTCCCGGTTACATCCTGCCCAATGGCA
AGTTCTGGATATGGACCGCCTTCACGTTCTGCTTCATCGAGCTGCACTGG
TGGGAGGTGGCCGTCGACGTGGTCACCGTCGGCCTGTGCGGCAAGATGCT
GGAACCGCTCTGGGGCCAGCTGGAGATGTTCAAGTTCTTCGCGCTGAGCA
ACTTTGGCGTCTCGCTGCTGACCACTGTCTACTATTTGTTCTACTACATG
GTCACCAAGAACCCGACCATTCTCTTCGAGGTGCACATTCACGGCCTGGC
CGGATACGTGGCTGGCATCTGCGTAGCCGTACGCCAGATAATGCCCGATC
ACCTGATCTTCAAGACGCGCTACGGACGTCTGACCAATAGGAACGTTCCC
CTCACGGTGCTCATCATGGCCATCATACTGTGGGCCATTGGCCTGCTAGA
TGGCACTTATCCGGCTATGTTCGCCTCCGGATCGCTGGTTTCTTGGATCT
ATCTCCGCTTCTATCAACACCATCCCAATGGGCGTGGCGACAGCTCGGAG
AGCTTCACGTTCGTCAGCTTCTTCCCAAACGTATCACAGCCGTTTATCAG
CGTATTGGTTAATCCCATTTACAATTGCTGTTTGCGGGCGGGCGTGGTCA
AGACGCCCACGCCGCTGCGGACGATATCTACGGCCAGCCTGACGTCGGTA
TCGGTGCAAATGGCGGGAGTGGATCCGCATGACATTG
BO09446.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:42:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9536-PA | 1353 | CG9536-RA | 1..871 | 17..887 | 4330 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:08:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9536-RB | 1888 | CG9536-RB | 230..1101 | 16..887 | 4345 | 99.9 | Plus |
CG9536-RA | 1944 | CG9536-RA | 230..1101 | 16..887 | 4345 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:08:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6476221..6476746 | 541..16 | 2630 | 100 | Minus |
2L | 23513712 | 2L | 6475456..6475804 | 887..539 | 1730 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:08:53 has no hits.
BO09446.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:10:54 Download gff for
BO09446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9536-PA | 1..871 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:14:52 Download gff for
BO09446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9536-PA | 1..871 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:45:44 Download gff for
BO09446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9536-RA | 216..1101 | 1..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:57:11 Download gff for
BO09446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9536-RA | 216..1101 | 1..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 12:57:11 Download gff for
BO09446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6475456..6475802 | 541..887 | 99 | <- | Minus |
2L | 6476222..6476746 | 16..540 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:45:44 Download gff for
BO09446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6475456..6475802 | 541..887 | 99 | <- | Minus |
arm_2L | 6476222..6476746 | 16..540 | 100 | -> | Minus |
BO09446.complete Sequence
1384 bp (1384 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631503
> BO09446.complete
GAAGTTATCAGTCGACATGTCAGCTCAACTGGCCAGAAACTGGCCGTACA
TCTGGCAACAGCTCAATGCTCTGCTGCACAACACCTCGCCGGTCATAACG
CTCATCTGCGTGGTGACCACGTTCGGCTACCTGCTATCCTTCTCGGAGAC
GGCCATCCTGCTGCTCAGCGTCACTCCCGGTTACATCCTGCCCAATGGCA
AGTTCTGGATATGGACCGCCTTCACGTTCTGCTTCATCGAGCTGCACTGG
TGGGAGGTGGCCGTCGACGTGGTCACCGTCGGCCTGTGCGGCAAGATGCT
GGAACCGCTCTGGGGCCAGCTGGAGATGTTCAAGTTCTTCGCGCTGAGCA
ACTTTGGCGTCTCGCTGCTGACCACTGTCTACTATTTGTTCTACTACATG
GTCACCAAGAACCCGACCATTCTCTTCGAGGTGCACATTCACGGCCTGGC
CGGATACGTGGCTGGCATCTGCGTAGCCGTACGCCAGATAATGCCCGATC
ACCTGATCTTCAAGACGCGCTACGGACGTCTGACCAATAGGAACGTTCCC
CTCACGGTGCTCATCATGGCCATCATACTGTGGGCCATTGGCCTGCTAGA
TGGCACTTATCCGGCTATGTTCGCCTCCGGATCGCTGGTTTCTTGGATCT
ATCTCCGCTTCTATCAACACCATCCCAATGGGCGTGGCGACAGCTCGGAG
AGCTTCACGTTCGTCAGCTTCTTCCCAAACGTATCACAGCCGTTTATCAG
CGTATTGGTTAATCCCATTTACAATTGCTGTTTGCGGGCGGGCGTGGTCA
AGACGCCCACGCCGCTGCGGACGATATCTACGGCCAGCCTGACGTCGGTA
TCGGTGCAAATGCCGGGAGTGGATCCGCATGACATTGAGAGAAGGCGACA
AATTGCCTTGAAGGCGCTAAGTGAGCGCCTAAAGGCCACGGACTCCAGCC
GCCACGCCCAGCTGCCCAAGTCGTTCCCGCAGCAGCAGCAGCTGCAACAT
CATCATCACCAGCACGCGCCGCACCAGCAGCAAAAGCATCACAGTCACGG
CACTGGCCACAGTCACAGCCATGGAGCGGGCCATAGTCATAGTCATGGAG
CGGGACACAGTCATGGGCCCGGTCCTGCTCAGATGCCGCAGCCCGACTTC
CTGAAGTCCACCGGCAGCGCCAGCCAGCTGCCCATCACAACGTCGCGGGC
GGAGCCGCGCATGATCAGCACCATGAGCCCGATTGCAATACCAATGCCGG
CGCCACCGCCCAAGGAGGGTAATGTTCCGGGTCAAGGTGCTGAATCCTCC
TCCAGCGGAGGTGTCGAGGCGACCCTTATTAACCTGGACGACGTACCAAC
CACGTCTTCGATGGCCGCAAGCTTTCTAGACCAT
BO09446.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:32:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9536-RB | 1353 | CG9536-PB | 1..1350 | 17..1366 | 6750 | 100 | Plus |
CG9536-RA | 1353 | CG9536-PA | 1..1350 | 17..1366 | 6750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:32:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9536-RB | 1888 | CG9536-RB | 230..1580 | 16..1366 | 6755 | 100 | Plus |
CG9536-RA | 1944 | CG9536-RA | 230..1580 | 16..1366 | 6755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:32:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6476221..6476746 | 541..16 | 2630 | 100 | Minus |
2L | 23513712 | 2L | 6474802..6475271 | 1366..897 | 2350 | 100 | Minus |
2L | 23513712 | 2L | 6475446..6475804 | 897..539 | 1795 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:32:43 has no hits.
BO09446.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:26 Download gff for
BO09446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9536-RA | 1..1353 | 17..1367 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:55:39 Download gff for
BO09446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9536-RA | 228..1577 | 17..1368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:16 Download gff for
BO09446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9536-RA | 231..1580 | 17..1368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:26 Download gff for
BO09446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9536-RA | 213..1577 | 1..1366 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:15 Download gff for
BO09446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9536-RA | 231..1580 | 17..1368 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:15 Download gff for
BO09446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6474800..6475270 | 898..1368 | 99 | <- | Minus |
2L | 6475446..6475802 | 541..897 | 100 | <- | Minus |
2L | 6476222..6476745 | 17..540 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:16 Download gff for
BO09446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6474800..6475270 | 898..1368 | 99 | <- | Minus |
arm_2L | 6475446..6475802 | 541..897 | 100 | <- | Minus |
arm_2L | 6476222..6476745 | 17..540 | 100 | | Minus |
BO09446.pep Sequence
Translation from 16 to 1384
> BO09446.pep
MSAQLARNWPYIWQQLNALLHNTSPVITLICVVTTFGYLLSFSETAILLL
SVTPGYILPNGKFWIWTAFTFCFIELHWWEVAVDVVTVGLCGKMLEPLWG
QLEMFKFFALSNFGVSLLTTVYYLFYYMVTKNPTILFEVHIHGLAGYVAG
ICVAVRQIMPDHLIFKTRYGRLTNRNVPLTVLIMAIILWAIGLLDGTYPA
MFASGSLVSWIYLRFYQHHPNGRGDSSESFTFVSFFPNVSQPFISVLVNP
IYNCCLRAGVVKTPTPLRTISTASLTSVSVQMPGVDPHDIERRRQIALKA
LSERLKATDSSRHAQLPKSFPQQQQLQHHHHQHAPHQQQKHHSHGTGHSH
SHGAGHSHSHGAGHSHGPGPAQMPQPDFLKSTGSASQLPITTSRAEPRMI
STMSPIAIPMPAPPPKEGNVPGQGAESSSSGGVEATLINLDDVPTTSSMA
ASFLDH
BO09446.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9536-PB | 450 | CG9536-PB | 1..450 | 1..450 | 2403 | 100 | Plus |
CG9536-PA | 450 | CG9536-PA | 1..450 | 1..450 | 2403 | 100 | Plus |