Clone BO09446 Report

Search the DGRC for BO09446

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:94
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG9536-RA
Protein status:BO09446.pep: validated full length
Sequenced Size:1384

Clone Sequence Records

BO09446.3prime Sequence

959 bp (811 high quality bases) assembled on 2006-01-23

> BO09446.3prime
ATGGTCTAGAAAGCTTGCGGCCATCGAAGACGTGGTTGGTACGTCGTCCA
GGTTAATAAGGGTCGCCTCGACACCTCCGCTGGAGGAGGATTCAGCACCT
TGACCCGGAACATTACCCTCCTTGGGCGGTGGCGCCGGCATTGGTATTGC
AATCGGGCTCATGGTGCTGATCATGCGCGGCTCCGCCCGCGACGTTGTGA
TGGGCAGCTGGCTGGCGCTGCCGGTGGACTTCAGGAAGTCGGGCTGCGGC
ATCTGAGCAGGACCGGGCCCATGACTGTGTCCCGCTCCATGACTATGACT
ATGGCCCGCTCCATGGCTGTGACTGTGGCCAGTGCCGTGACTGTGATGCT
TTTGCTGCTGGTGCGGCGCGTGCTGGTGATGATGATGTTGCAGCTGCTGC
TGCTGCGGGAACGACTTGGGCAGCTGGGCGTGGCGGCTGGAGTCCGTGGC
CTTTAGGCGCTCACTTAGCGCCTTCAAGGCAATTTGTCGCCTTCTCTCAA
TGTCATGCGGATCCACTCCCGGCATTTGCACCGATACCGACGTCAGGCTG
GCCGTAGATATCGTCCGCAGCGGCGTGGGCGTCTTGACCACGCCCGCCCG
CAAACAGCAATTGTAAATGGGATTAACCAATACGCTGATAAACGGCTGTG
ATACGTTTGGGAAGAAGCTGACGAACGTGAAGCTCTCCGAGCTGTCGCCA
CGCCCATTGGGATGGTGTTGATAGAAGCGGAGATAGATCCAAGAAACCAG
CGATCCGGAGGCGAACATAGCCGGATAAGTGCCATCTAGCAGGCCAATGG
CCCACAGTATGATGGCCATGATGAGCACCGTGAGGGGAACGTTCCTATTG
GTCAGACGTCCGTAGCGCGTCTTGAAGATCAGGTGATCGGGCATTATCTG
GCGTACGGCTACGCAGATGCCAGCCACGTATCCCGGCAGGCCGTGAATGT
GCACCTCGA

BO09446.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG9536-PA 1353 CG9536-RA 410..1350 959..19 4655 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG9536-RB 1888 CG9536-RB 640..1580 959..19 4675 99.8 Minus
CG9536-RA 1944 CG9536-RA 640..1580 959..19 4675 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6474802..6475271 19..488 2350 100 Plus
2L 23513712 2L 6475446..6475804 488..846 1795 100 Plus
2L 23513712 2L 6476221..6476336 844..959 550 98.3 Plus
Blast to na_te.dros performed on 2015-02-12 03:47:17 has no hits.

BO09446.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:10:54 Download gff for BO09446.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9536-PA 411..1353 18..958 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:14:51 Download gff for BO09446.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9536-PA 411..1353 18..958 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:42:48 Download gff for BO09446.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9536-RA 641..1580 19..958 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:43 Download gff for BO09446.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9536-RA 641..1580 19..958 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:43 Download gff for BO09446.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6474802..6475270 19..487 100 <- Plus
2L 6475446..6475802 488..844 100 <- Plus
2L 6476222..6476335 845..958 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:42:48 Download gff for BO09446.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6474802..6475270 19..487 100 <- Plus
arm_2L 6475446..6475802 488..844 100 <- Plus
arm_2L 6476222..6476335 845..958 98   Plus

BO09446.5prime Sequence

887 bp (799 high quality bases) assembled on 2006-01-23

> BO09446.5prime
GAAGTTATCAGTCGACATGTCAGCTCAACTGGCCAGAAACTGGCCGTACA
TCTGGCAACAGCTCAATGCTCTGCTGCACAACACCTCGCCGGTCATAACG
CTCATCTGCGTGGTGACCACGTTCGGCTACCTGCTATCCTTCTCGGAGAC
GGCCATCCTGCTGCTCAGCGTCACTCCCGGTTACATCCTGCCCAATGGCA
AGTTCTGGATATGGACCGCCTTCACGTTCTGCTTCATCGAGCTGCACTGG
TGGGAGGTGGCCGTCGACGTGGTCACCGTCGGCCTGTGCGGCAAGATGCT
GGAACCGCTCTGGGGCCAGCTGGAGATGTTCAAGTTCTTCGCGCTGAGCA
ACTTTGGCGTCTCGCTGCTGACCACTGTCTACTATTTGTTCTACTACATG
GTCACCAAGAACCCGACCATTCTCTTCGAGGTGCACATTCACGGCCTGGC
CGGATACGTGGCTGGCATCTGCGTAGCCGTACGCCAGATAATGCCCGATC
ACCTGATCTTCAAGACGCGCTACGGACGTCTGACCAATAGGAACGTTCCC
CTCACGGTGCTCATCATGGCCATCATACTGTGGGCCATTGGCCTGCTAGA
TGGCACTTATCCGGCTATGTTCGCCTCCGGATCGCTGGTTTCTTGGATCT
ATCTCCGCTTCTATCAACACCATCCCAATGGGCGTGGCGACAGCTCGGAG
AGCTTCACGTTCGTCAGCTTCTTCCCAAACGTATCACAGCCGTTTATCAG
CGTATTGGTTAATCCCATTTACAATTGCTGTTTGCGGGCGGGCGTGGTCA
AGACGCCCACGCCGCTGCGGACGATATCTACGGCCAGCCTGACGTCGGTA
TCGGTGCAAATGGCGGGAGTGGATCCGCATGACATTG

BO09446.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:42:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9536-PA 1353 CG9536-RA 1..871 17..887 4330 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG9536-RB 1888 CG9536-RB 230..1101 16..887 4345 99.9 Plus
CG9536-RA 1944 CG9536-RA 230..1101 16..887 4345 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6476221..6476746 541..16 2630 100 Minus
2L 23513712 2L 6475456..6475804 887..539 1730 99.7 Minus
Blast to na_te.dros performed on 2015-02-13 09:08:53 has no hits.

BO09446.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:10:54 Download gff for BO09446.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9536-PA 1..871 17..887 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:14:52 Download gff for BO09446.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9536-PA 1..871 17..887 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:45:44 Download gff for BO09446.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9536-RA 216..1101 1..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:57:11 Download gff for BO09446.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9536-RA 216..1101 1..887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 12:57:11 Download gff for BO09446.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6475456..6475802 541..887 99 <- Minus
2L 6476222..6476746 16..540 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:45:44 Download gff for BO09446.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6475456..6475802 541..887 99 <- Minus
arm_2L 6476222..6476746 16..540 100 -> Minus

BO09446.complete Sequence

1384 bp (1384 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631503

> BO09446.complete
GAAGTTATCAGTCGACATGTCAGCTCAACTGGCCAGAAACTGGCCGTACA
TCTGGCAACAGCTCAATGCTCTGCTGCACAACACCTCGCCGGTCATAACG
CTCATCTGCGTGGTGACCACGTTCGGCTACCTGCTATCCTTCTCGGAGAC
GGCCATCCTGCTGCTCAGCGTCACTCCCGGTTACATCCTGCCCAATGGCA
AGTTCTGGATATGGACCGCCTTCACGTTCTGCTTCATCGAGCTGCACTGG
TGGGAGGTGGCCGTCGACGTGGTCACCGTCGGCCTGTGCGGCAAGATGCT
GGAACCGCTCTGGGGCCAGCTGGAGATGTTCAAGTTCTTCGCGCTGAGCA
ACTTTGGCGTCTCGCTGCTGACCACTGTCTACTATTTGTTCTACTACATG
GTCACCAAGAACCCGACCATTCTCTTCGAGGTGCACATTCACGGCCTGGC
CGGATACGTGGCTGGCATCTGCGTAGCCGTACGCCAGATAATGCCCGATC
ACCTGATCTTCAAGACGCGCTACGGACGTCTGACCAATAGGAACGTTCCC
CTCACGGTGCTCATCATGGCCATCATACTGTGGGCCATTGGCCTGCTAGA
TGGCACTTATCCGGCTATGTTCGCCTCCGGATCGCTGGTTTCTTGGATCT
ATCTCCGCTTCTATCAACACCATCCCAATGGGCGTGGCGACAGCTCGGAG
AGCTTCACGTTCGTCAGCTTCTTCCCAAACGTATCACAGCCGTTTATCAG
CGTATTGGTTAATCCCATTTACAATTGCTGTTTGCGGGCGGGCGTGGTCA
AGACGCCCACGCCGCTGCGGACGATATCTACGGCCAGCCTGACGTCGGTA
TCGGTGCAAATGCCGGGAGTGGATCCGCATGACATTGAGAGAAGGCGACA
AATTGCCTTGAAGGCGCTAAGTGAGCGCCTAAAGGCCACGGACTCCAGCC
GCCACGCCCAGCTGCCCAAGTCGTTCCCGCAGCAGCAGCAGCTGCAACAT
CATCATCACCAGCACGCGCCGCACCAGCAGCAAAAGCATCACAGTCACGG
CACTGGCCACAGTCACAGCCATGGAGCGGGCCATAGTCATAGTCATGGAG
CGGGACACAGTCATGGGCCCGGTCCTGCTCAGATGCCGCAGCCCGACTTC
CTGAAGTCCACCGGCAGCGCCAGCCAGCTGCCCATCACAACGTCGCGGGC
GGAGCCGCGCATGATCAGCACCATGAGCCCGATTGCAATACCAATGCCGG
CGCCACCGCCCAAGGAGGGTAATGTTCCGGGTCAAGGTGCTGAATCCTCC
TCCAGCGGAGGTGTCGAGGCGACCCTTATTAACCTGGACGACGTACCAAC
CACGTCTTCGATGGCCGCAAGCTTTCTAGACCAT

BO09446.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG9536-RB 1353 CG9536-PB 1..1350 17..1366 6750 100 Plus
CG9536-RA 1353 CG9536-PA 1..1350 17..1366 6750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG9536-RB 1888 CG9536-RB 230..1580 16..1366 6755 100 Plus
CG9536-RA 1944 CG9536-RA 230..1580 16..1366 6755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6476221..6476746 541..16 2630 100 Minus
2L 23513712 2L 6474802..6475271 1366..897 2350 100 Minus
2L 23513712 2L 6475446..6475804 897..539 1795 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:32:43 has no hits.

BO09446.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:26 Download gff for BO09446.complete
Subject Subject Range Query Range Percent Splice Strand
CG9536-RA 1..1353 17..1367 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:55:39 Download gff for BO09446.complete
Subject Subject Range Query Range Percent Splice Strand
CG9536-RA 228..1577 17..1368 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:16 Download gff for BO09446.complete
Subject Subject Range Query Range Percent Splice Strand
CG9536-RA 231..1580 17..1368 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:26 Download gff for BO09446.complete
Subject Subject Range Query Range Percent Splice Strand
CG9536-RA 213..1577 1..1366 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:15 Download gff for BO09446.complete
Subject Subject Range Query Range Percent Splice Strand
CG9536-RA 231..1580 17..1368 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:15 Download gff for BO09446.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6474800..6475270 898..1368 99 <- Minus
2L 6475446..6475802 541..897 100 <- Minus
2L 6476222..6476745 17..540 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:16 Download gff for BO09446.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6474800..6475270 898..1368 99 <- Minus
arm_2L 6475446..6475802 541..897 100 <- Minus
arm_2L 6476222..6476745 17..540 100   Minus

BO09446.pep Sequence

Translation from 16 to 1384

> BO09446.pep
MSAQLARNWPYIWQQLNALLHNTSPVITLICVVTTFGYLLSFSETAILLL
SVTPGYILPNGKFWIWTAFTFCFIELHWWEVAVDVVTVGLCGKMLEPLWG
QLEMFKFFALSNFGVSLLTTVYYLFYYMVTKNPTILFEVHIHGLAGYVAG
ICVAVRQIMPDHLIFKTRYGRLTNRNVPLTVLIMAIILWAIGLLDGTYPA
MFASGSLVSWIYLRFYQHHPNGRGDSSESFTFVSFFPNVSQPFISVLVNP
IYNCCLRAGVVKTPTPLRTISTASLTSVSVQMPGVDPHDIERRRQIALKA
LSERLKATDSSRHAQLPKSFPQQQQLQHHHHQHAPHQQQKHHSHGTGHSH
SHGAGHSHSHGAGHSHGPGPAQMPQPDFLKSTGSASQLPITTSRAEPRMI
STMSPIAIPMPAPPPKEGNVPGQGAESSSSGGVEATLINLDDVPTTSSMA
ASFLDH

BO09446.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9536-PB 450 CG9536-PB 1..450 1..450 2403 100 Plus
CG9536-PA 450 CG9536-PA 1..450 1..450 2403 100 Plus