Clone Sequence Records
BO09461.3prime Sequence
883 bp (835 high quality bases) assembled on 2006-01-23
> BO09461.3prime
ATGGTCTAGAAAGCTTGCGAAGACCTCGTTGGGATTGCCATTGGACTGAT
CGGCCTTTTGGCGAGCACGTGCCAGTTTGGCAGAAAGCTCCGATGATCGA
ATGGTTTTGTACTCGCAGAAATTCTTTTGCAGCACGATCTGGGAAATGAG
GCGGCGACTCTCCCGCCGGCCAAAGTAACTTTCGATGGTGTGCGGTGATA
GGGCGAAGATCTCCTCGCCGGATAGCGTGTGCAATCGTTTGATAATGATG
TCCGAGAATCCCTTGCCCCGCAGCCACTCCTCCACCTCGCTTGGCTTTGA
ATTCTGGGTGATGAAGATTTCCGGCGTCTTAAGGATCTCGAGGTCCTTGC
GCCTCTCTCGCTGCTGCTGCAGTAGACGCAGTTCATCATGCACGTCGCCC
TGCATGTAGTAGAGCTGATCATCTGCCTCGCAATCATTGCGGGCCCGCAT
GGCTGCTAGTGCTCCTGCCGCCGCCATGTTGCGTTTGAGTGTGCCACTGG
GCGTGGGCGTTTGGCTATCGCTCGGTGGAGGCATCGGTGGTGGAACGGGC
ACGTTGGGCATCGAGAAGGTGCGCTGCATGGCCTTGCCATTGGCCGCCGG
CTGCTCCACGGGAGCGGTATACATGGCCATTGTGTTGCGGTACAGCGGAG
GAGGAATGGCCTCCTCGCCGCCGTTCTCCGTCAAAGCCATTGAGGCCAGC
GACTCCGTGTCCCGGCCATTTACTCCGGGCTCAAAGTTGTACGGCGTGAG
CACTGTGTGCGGCACGTAGCCAATGTTTCCGTACGAGTTACGGGCCTTCC
ACCAGTTGCGGGAGTCATCGATAATCTCCAAATACTCTCCCTTTGTAACC
TTTAGTTCCTTATCGTTGGTGGCCGACTTATTG
BO09461.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:42:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8907-PA | 2139 | CG8907-RA | 1272..2136 | 883..19 | 4325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:45:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8907-RB | 2360 | CG8907-RB | 1372..2236 | 883..19 | 4325 | 100 | Minus |
| CG8907-RA | 2368 | CG8907-RA | 1380..2244 | 883..19 | 4325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:45:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17011458..17011832 | 827..453 | 1875 | 100 | Minus |
| 3R | 32079331 | 3R | 17011905..17012248 | 455..112 | 1720 | 100 | Minus |
| 3R | 32079331 | 3R | 17012315..17012409 | 113..19 | 475 | 100 | Minus |
| 3R | 32079331 | 3R | 17010800..17010857 | 883..826 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:45:31 has no hits.
BO09461.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:11:23 Download gff for
BO09461.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8907-PA | 1272..2139 | 15..883 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:15:31 Download gff for
BO09461.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8907-PA | 1272..2139 | 15..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:57:37 Download gff for
BO09461.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8907-RA | 1380..2248 | 14..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:04 Download gff for
BO09461.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8907-RA | 1380..2248 | 14..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:04 Download gff for
BO09461.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17010800..17010857 | 826..883 | 100 | -> | Minus |
| 3R | 17011460..17011832 | 453..825 | 100 | -> | Minus |
| 3R | 17011908..17012248 | 112..452 | 100 | -> | Minus |
| 3R | 17012317..17012413 | 14..111 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:57:37 Download gff for
BO09461.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12836522..12836579 | 826..883 | 100 | -> | Minus |
| arm_3R | 12837182..12837554 | 453..825 | 100 | -> | Minus |
| arm_3R | 12837630..12837970 | 112..452 | 100 | -> | Minus |
| arm_3R | 12838039..12838135 | 14..111 | 97 | | Minus |
BO09461.5prime Sequence
950 bp (810 high quality bases) assembled on 2006-01-23
> BO09461.5prime
GAAGTTATCAGTCGACATGCCACAAAACGGCTACGAAAATGGAGTCCCTG
GCGGGAATCAGGCAAATGGGCACTACGACGAGGTCAAGCCCACCTATGCC
CTGGAGCACTTGGCCACCTTTAAGCTGAAGAACGAGGCTGAGGTCAAGCA
GCCGAAGGAGAAGATGAAGCTTCTGGTCGAATTGGAAAAGACCGGGGGCA
TTTGGCCGCACAAGATGTTCATGAGCTTCAATGGGCAGTGGCTGGTGATG
CTGGACAGTGATATGAAGGAGATTGAGAACTTTCCGGGGAGCCTGATCAC
GGAGCCCACGGCTTTTATAAGCGATCATCCGCAGGAGTCATTCAACAATA
TCCTCATTTTCTCAGTGCCCGGAATCTCACTGGGCAATACCGAAATGCAC
ATCTTCCAGGTGGCCGATGTCAGTTCCGTGCTCTTGGTTGAGGATCTAAA
GACGCTAAGCAAGGGAACCCCTGTGACAGTGGATCGCAACAAGACGCCCA
TCCTGCTGCCCAAGCCGGAGAGGCCGCAGAACCAGCAGGCCAAGGATCAG
TATGGAATAGCAGCTGCTGTGGCCGGAATAGCAGCCGAGAAGAATGCCAT
AGACAAGGAGCAGACCGAGAGGGATGTCCAGGTGATAAACCACTGCTTCG
AGGACATCGAGCGGTTCATGGCCCGTCTTCATTATGCCGCCGAGGCGCTT
AACGAGCTAAAGTTGCGCAAGGAACAGCATAATCCCCACGGTGAGGGACT
TTTGGTCCTGAGATCGCGACCACCAATCGAGAGCGAGTTCCATGACATTT
TGGCCAAGGCGAAACTGGCCCTTATATACTCCGTTCGGCTGCAGAACCAA
TTCACCAAGCCCGCCGATCCGGTGCACAATGTCTTCATATCGCTTAAATC
ATCGTCACGGTTTGCAACGATATCTACCTGGATGCGGGTCTGCCGCAGGC
BO09461.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:42:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8907-PA | 2139 | CG8907-RA | 1..884 | 17..900 | 4420 | 100 | Plus |
| CG8907-PA | 2139 | CG8907-RA | 885..935 | 900..950 | 230 | 98 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:27:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8907-RB | 2360 | CG8907-RB | 101..1035 | 17..950 | 4635 | 99.8 | Plus |
| CG8907-RA | 2368 | CG8907-RA | 109..1043 | 17..950 | 4635 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:27:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17009966..17010463 | 454..950 | 2425 | 99.6 | Plus |
| 3R | 32079331 | 3R | 17009411..17009806 | 17..412 | 1980 | 100 | Plus |
| 3R | 32079331 | 3R | 17009859..17009905 | 408..454 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:27:53 has no hits.
BO09461.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:11:24 Download gff for
BO09461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8907-PA | 1..935 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:15:33 Download gff for
BO09461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8907-PA | 1..935 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:57:15 Download gff for
BO09461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8907-RA | 106..1043 | 10..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:21:48 Download gff for
BO09461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8907-RA | 106..1043 | 10..950 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:21:48 Download gff for
BO09461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17009406..17009803 | 8..409 | 99 | -> | Plus |
| 3R | 17009861..17009905 | 410..454 | 100 | -> | Plus |
| 3R | 17009967..17010463 | 455..950 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:57:15 Download gff for
BO09461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12835128..12835525 | 8..409 | 99 | -> | Plus |
| arm_3R | 12835583..12835627 | 410..454 | 100 | -> | Plus |
| arm_3R | 12835689..12836185 | 455..950 | 99 | | Plus |
BO09461.complete Sequence
2170 bp (2170 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631504
> BO09461.complete
GAAGTTATCAGTCGACATGCCACAAAACGGCTACGAAAATGGAGTCCCTG
GCGGGAATCAGGCAAATGGGCACTACGACGAGGTCAAGCCCACCTATGCC
CTGGAGCACTTGGCCACCTTTAAGCTGAAGAACGAGGCTGAGGTCAAGCA
GCCGAAGGAGAAGATGAAGCTTCTGGTCGAATTGGAAAAGACCGGGGGCA
TTTGGCCGCACAAGATGTTCATGAGCTTCAATGGGCAGTGGCTGGTGATG
CTGGACAGTGATATGAAGGAGATTGAGAACTTTCCGGGGAGCCTGATCAC
GGAGCCCACGGCTTTTATAAGCGATCATCCGCAGGAGTCATTCAACAATA
TCCTCATTTTCTCAGTGCCCGGAATCTCACTGGGCAATACCGAAATGCAC
ATCTTCCAGGTGGCCGATGTCAGTTCCGTGCTCTTGGTTGAGGATCTAAA
GACGCTAAGCAAGGGAACCCCTGTGACAGTGGATCGCAACAAGACGCCCA
TCCTGCTGCCCAAGCCGGAGAGGCCGCAGAACCAGCAGGCCAAGGATCAG
TATGGAATAGCAGCTGCTGTGGCCGGAATAGCAGCCGAGAAGAATGCCAT
AGACAAGGAGCAGACCGAGAGGGATGTCCAGGTGATAAACCACTGCTTCG
AGGACATCGAGCGGTTCATGGCCCGTCTTCATTATGCCGCCGAGGCGCTT
AACGAGCTAAAGTTGCGCAAGGAACAGCATAATCCCCACGGTGAGGGACT
TTTGGTCCTGAGATCGCGACCACCAATCGAGAGCGAGTTCCATGACATTT
TGGCCAAGGCGAAACTGGCCCTTATATACTCCGTTCGGCTGCAGAACCAA
TTCACCAAGCCCGCCGATCCGGTGCACAATGTCTTCATATCGCTTAAATC
CATCGTCACGGTTTGCAACGATATCTACGTGGATGCGGGTCTGCCGCAGG
CGGTACTTAATCCCCTCCTGCGCCGTGAGACCATTGCCTTCCTCAATGGC
ACCCTCGACTCCAACGAGATGCAGCTGTGGCAGAGCCTCGGTCCCAACTG
GACGGTTCCCAAGGATCAGTTCAAGGATCACAAGAGCTCTTATCATCCGA
TCTTCTACGACGATTGGTCTCCCGATTGGGTGGTCGATGAGGAGGTGCCG
TACCTGGCTCCTGCTCTAAAAAAGAGCACAACGCCTTCGCCAGTGCCGGT
TCCCATGCCCCCGAGTCCAGGTCTAGGAAATCGCACCTGGCTGAGTAGAT
TGGAGAGCCGAAATGTCAAGATCGCCGAGGTTACCTTCAATAAGTCGGCC
ACCAACGATAAGGAACTAAAGGTTACAAAGGGAGAGTATTTGGAGATTAT
CGATGACTCCCGCAACTGGTGGAAGGCCCGTAACTCGTACGGAAACATTG
GCTACGTGCCGCACACAGTGCTCACGCCGTACAACTTTGAGCCCGGAGTA
AATGGCCGGGACACGGAGTCGCTGGCCTCAATGGCTTTGACGGAGAACGG
CGGCGAGGAGGCCATTCCTCCTCCGCTGTACCGCAACACAATGGCCATGT
ATACCGCTCCCGTGGAGCAGCCGGCGGCCAATGGCAAGGCCATGCAGCGC
ACCTTCTCGATGCCCAACGTGCCCGTTCCACCACCGATGCCTCCACCGAG
CGATAGCCAAACGCCCACGCCCAGTGGCACACTCAAACGCAACATGGCGG
CGGCAGGAGCACTAGCAGCCATGCGGGCCCGCAATGATTGCGAGGCAGAT
GATCAGCTCTACTACATGCAGGGCGACGTGCATGATGAACTGCGTCTACT
GCAGCAGCAGCGAGAGAGGCGCAAGGACCTCGAGATCCTTAAGACGCCGG
AAATCTTCATCACCCAGAATTCAAAGCCAAGCGAGGTGGAGGAGTGGCTG
CGGGGCAAGGGATTCTCGGACATCATTATCAAACGATTGCACACGCTATC
CGGCGAGGAGATCTTCGCCCTATCACCGCACACCATCGAAAGTTACTTTG
GCCGGCGGGAGAGTCGCCGCCTCATTTCCCAGATCGTGCTGCAAAAGAAT
TTCTGCGAGTACAAAACCATTCGATCATCGGAGCTTTCTGCCAAACTGGC
ACGTGCTCGCCAAAAGGCCGATCAGTCCAATGGCAATCCCAACGAGGTCT
TCGCAAGCTTTCTAGACCAT
BO09461.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:38:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8907-RB | 2199 | CG8907-PB | 61..2196 | 17..2152 | 10680 | 100 | Plus |
| CG8907-RA | 2139 | CG8907-PA | 1..2136 | 17..2152 | 10680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:38:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8907-RB | 2360 | CG8907-RB | 101..2236 | 17..2152 | 10680 | 100 | Plus |
| CG8907-RA | 2368 | CG8907-RA | 109..2244 | 17..2152 | 10680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:38:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17009966..17010857 | 454..1345 | 4460 | 100 | Plus |
| 3R | 32079331 | 3R | 17009411..17009806 | 17..412 | 1980 | 100 | Plus |
| 3R | 32079331 | 3R | 17011458..17011832 | 1344..1718 | 1875 | 100 | Plus |
| 3R | 32079331 | 3R | 17011905..17012248 | 1716..2059 | 1720 | 100 | Plus |
| 3R | 32079331 | 3R | 17012315..17012409 | 2058..2152 | 475 | 100 | Plus |
| 3R | 32079331 | 3R | 17009859..17009905 | 408..454 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:38:52 has no hits.
BO09461.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:05 Download gff for
BO09461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8907-RA | 1..2139 | 17..2156 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:16:58 Download gff for
BO09461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8907-RA | 101..2243 | 10..2157 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:07 Download gff for
BO09461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8907-RA | 109..2244 | 17..2154 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:05 Download gff for
BO09461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8907-RA | 101..2243 | 10..2157 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:53 Download gff for
BO09461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8907-RA | 109..2244 | 17..2154 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:53 Download gff for
BO09461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17009411..17009803 | 17..409 | 100 | -> | Plus |
| 3R | 17009861..17009905 | 410..454 | 100 | -> | Plus |
| 3R | 17009967..17010857 | 455..1345 | 100 | -> | Plus |
| 3R | 17011460..17011832 | 1346..1718 | 100 | -> | Plus |
| 3R | 17011908..17012248 | 1719..2059 | 100 | -> | Plus |
| 3R | 17012317..17012409 | 2060..2154 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:07 Download gff for
BO09461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12837630..12837970 | 1719..2059 | 100 | -> | Plus |
| arm_3R | 12835133..12835525 | 17..409 | 100 | -> | Plus |
| arm_3R | 12835583..12835627 | 410..454 | 100 | -> | Plus |
| arm_3R | 12835689..12836579 | 455..1345 | 100 | -> | Plus |
| arm_3R | 12837182..12837554 | 1346..1718 | 100 | -> | Plus |
| arm_3R | 12838039..12838131 | 2060..2154 | 97 | | Plus |
BO09461.pep Sequence
Translation from 16 to 2170
> BO09461.pep
MPQNGYENGVPGGNQANGHYDEVKPTYALEHLATFKLKNEAEVKQPKEKM
KLLVELEKTGGIWPHKMFMSFNGQWLVMLDSDMKEIENFPGSLITEPTAF
ISDHPQESFNNILIFSVPGISLGNTEMHIFQVADVSSVLLVEDLKTLSKG
TPVTVDRNKTPILLPKPERPQNQQAKDQYGIAAAVAGIAAEKNAIDKEQT
ERDVQVINHCFEDIERFMARLHYAAEALNELKLRKEQHNPHGEGLLVLRS
RPPIESEFHDILAKAKLALIYSVRLQNQFTKPADPVHNVFISLKSIVTVC
NDIYVDAGLPQAVLNPLLRRETIAFLNGTLDSNEMQLWQSLGPNWTVPKD
QFKDHKSSYHPIFYDDWSPDWVVDEEVPYLAPALKKSTTPSPVPVPMPPS
PGLGNRTWLSRLESRNVKIAEVTFNKSATNDKELKVTKGEYLEIIDDSRN
WWKARNSYGNIGYVPHTVLTPYNFEPGVNGRDTESLASMALTENGGEEAI
PPPLYRNTMAMYTAPVEQPAANGKAMQRTFSMPNVPVPPPMPPPSDSQTP
TPSGTLKRNMAAAGALAAMRARNDCEADDQLYYMQGDVHDELRLLQQQRE
RRKDLEILKTPEIFITQNSKPSEVEEWLRGKGFSDIIIKRLHTLSGEEIF
ALSPHTIESYFGRRESRRLISQIVLQKNFCEYKTIRSSELSAKLARARQK
ADQSNGNPNEVFASFLDH
BO09461.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:16:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8907-PB | 732 | CG8907-PB | 21..732 | 1..712 | 3738 | 100 | Plus |
| CG8907-PA | 712 | CG8907-PA | 1..712 | 1..712 | 3738 | 100 | Plus |
| aru-PC | 778 | CG4276-PC | 56..487 | 24..377 | 705 | 39.1 | Plus |
| aru-PD | 778 | CG4276-PD | 56..487 | 24..377 | 705 | 39.1 | Plus |
| aru-PA | 805 | CG4276-PA | 83..514 | 24..377 | 705 | 39.1 | Plus |
| aru-PC | 778 | CG4276-PC | 652..722 | 407..477 | 233 | 54.9 | Plus |
| aru-PD | 778 | CG4276-PD | 652..722 | 407..477 | 233 | 54.9 | Plus |
