Clone Sequence Records
BO09462.3prime Sequence
865 bp (863 high quality bases) assembled on 2006-01-23
> BO09462.3prime
ATGGTCTAGAAAGCTTGCGCTGGAGGCCACCTGCTCCTCCGCCACGTCCT
CTGTTTCCCGTCTCTTTTCGGTCTTTGGCTTCTGGTCCTGCTCATCAATC
CTCTCCGGATCCGCAGGCAGCTGGATGTTTACGGCAGACAGAGCTTCTCG
TATCCAAGCCGGAACAGGTTCCGCCTTGAAGTGTCTCGCCATAAAGTCCG
CGACGAACTGGGGGAACTCATCGCGCTGAATGGCCTCCCGCATGCTCCTC
ATCAGCCTGAGCTGGTAGGCCACGTTGTGTATGCTCAACAGGGAGCTGGA
GACACTCTCGTTGGTGGCGATGTGGTGCAGGTACGAGCGTGTGTAACGCC
TACACGTGCTGCAGTCGCAGTCCTTGTCAATGGGCTCCATGTCCAGTTTG
TACTTGGGCTGCTTCAGGTTCAGCTGCCCACTGTCCACCAGGGCGCAACC
AAATCGAGCTGTCCGGGTGGGGAAGACACAGTCGAACATATCGATGCCCA
GGGCCACGCAGACCACCAGATCCGCCGCAAAACCCACGCCCATCAGGTAG
CGCGGCTTGTCCTTGGGCAGATAGCCAGTGCACACGTCCACCATACGCCA
GAAGTCGTGCTTGCTCTCGCCACCACTTAGCCCGCCCACGGCGAAGCCTC
GAACCTGGCGCTCCATGAGAGCGGAAACGCAACGCTGACGCAGCGGCACA
TCCAATCCTCCCTGGACGATGGGGAACAGCGACTGGTCATCGTCGCGGGC
ATGGGCCTCTATGCAGCGATCCACCCAGCGAATAGTCCGCTCCATGGCCT
CCTCCACCCGGGGGCCAGTTGTTGTGGTCTTGACCACATCATCCAGCTGC
ATCATAATATCCCCA
BO09462.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:42:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4947-PA | 1284 | Tgt-RA | 435..1281 | 865..19 | 4235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:19:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tgt-RA | 1566 | CG4947-RA | 536..1382 | 865..19 | 4235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:19:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1184668..1185514 | 865..19 | 4235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:19:22 has no hits.
BO09462.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:11:25 Download gff for
BO09462.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tgt-PA | 436..1284 | 15..864 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:15:34 Download gff for
BO09462.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4947-PA | 436..1284 | 15..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:26:34 Download gff for
BO09462.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tgt-RA | 537..1385 | 15..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:36:52 Download gff for
BO09462.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tgt-RA | 537..1385 | 15..864 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:36:52 Download gff for
BO09462.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1184669..1185517 | 15..864 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:26:34 Download gff for
BO09462.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1184669..1185517 | 15..864 | 99 | | Minus |
BO09462.5prime Sequence
861 bp (813 high quality bases) assembled on 2006-01-23
> BO09462.5prime
GAAGTTATCAGTCGACATGGGTCCCAGCCACATTCCTCCGCTGACCTACA
AGGTCGTGGCCGAGTGCTCCGTCTCCAAAGCCCGGGCGGGACTGATGACC
CTAAGGCACAGCGAGGTAAACACCCCGGTCTTTATGCCCGTGGGCACTCA
GGGAACCTTGAAGGGCATCGTGCCGGACCAGCTCATCGAGCTGAACTGCC
AGATTCTGCTGGGGAACACCTATCACCTGGGCCTGAGGCCCGGAATCGAG
ACACTGAAGAAAGCCGGTGGTCTGCACAAGTTTATGGGCTGGCCCAGGGC
CATTCTAACAGATTCCGGTGGCTTTCAGATGGTTTCCCTGCTGCAGCTGG
CCGAGATCGATGAGCACGGTGTGAACTTCCGGTCGCCCTTTGACAACAGC
CAGTGCATGCTGACGCCGGAGCACTCCATCGAAATCCAGAACGCCATTGG
TGGGGATATTATGATGCAGCTGGATGATGTGGTCAAGACCACAACAACTG
GCCCCCGGGTGGAGGAGGCCATGGAGCGGACTATTCGCTGGGTGGATCGC
TGCATAGAGGCCCATGCCCGCGACGATGACCAGTCGCTGTTCCCCATCGT
CCAGGGAGGATTGGATGTGCCGCTGCGTCAGCGTTGCGTTTCCGCTCTCA
TGGAGCGCCAGGTTCGAGGCTTCGCCGTGGGCGGGCTAAGTGGTGGCGAG
AGCAAGCACGACTTCTGGCGTATGGTGGACGTGTGCACTGGCTATCTGCC
CAAGGACAAGCCGCGCTACCTGATGGGCGTGGGTTTTGCGGCGGATCTGG
TGGTCTGCGTGGCCCTGGGCATCGATATGTTCGACTGTGTCTTCCCCACC
CGGACAGCTCG
BO09462.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:42:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4947-PA | 1284 | Tgt-RA | 1..845 | 17..861 | 4225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:27:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tgt-RA | 1566 | CG4947-RA | 102..946 | 17..861 | 4225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:27:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1184321..1185078 | 104..861 | 3790 | 100 | Plus |
| 2L | 23513712 | 2L | 1184166..1184255 | 17..106 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:27:42 has no hits.
BO09462.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:11:26 Download gff for
BO09462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tgt-PA | 1..845 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:15:36 Download gff for
BO09462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4947-PA | 1..845 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:57:14 Download gff for
BO09462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tgt-RA | 99..946 | 12..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:21:18 Download gff for
BO09462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tgt-RA | 99..946 | 12..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:21:18 Download gff for
BO09462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1184163..1184254 | 15..105 | 97 | -> | Plus |
| 2L | 1184323..1185078 | 106..861 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:57:14 Download gff for
BO09462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1184163..1184254 | 15..105 | 97 | -> | Plus |
| arm_2L | 1184323..1185078 | 106..861 | 100 | | Plus |
BO09462.complete Sequence
1315 bp (1315 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631505
> BO09462.complete
GAAGTTATCAGTCGACATGGGTCCCAGCCACATTCCTCCGCTGACCTACA
AGGTCGTGGCCGAGTGCTCCGTCTCCAAAGCCCGGGCGGGACTGATGACC
CTAAGGCACAGCGAGGTAAACACCCCGGTCTTTATGCCCGTGGGCACTCA
GGGAACCTTGAAGGGCATCGTGCCGGACCAGCTCATCGAGCTGAACTGCC
AGATTCTGCTGGGGAACACCTATCACCTGGGCCTGAGGCCCGGAATCGAG
ACACTGAAGAAAGCCGGTGGTCTGCACAAGTTTATGGGCTGGCCCAGGGC
CATTCTAACAGATTCCGGTGGCTTTCAGATGGTTTCCCTGCTGCAGCTGG
CCGAGATCGATGAGCACGGTGTGAACTTCCGGTCGCCCTTTGACAACAGC
CAGTGCATGCTGACGCCGGAGCACTCCATCGAAATCCAGAACGCCATTGG
TGGGGATATTATGATGCAGCTGGATGATGTGGTCAAGACCACAACAACTG
GCCCCCGGGTGGAGGAGGCCATGGAGCGGACTATTCGCTGGGTGGATCGC
TGCATAGAGGCCCATGCCCGCGACGATGACCAGTCGCTGTTCCCCATCGT
CCAGGGAGGATTGGATGTGCCGCTGCGTCAGCGTTGCGTTTCCGCTCTCA
TGGAGCGCCAGGTTCGAGGCTTCGCCGTGGGCGGGCTAAGTGGTGGCGAG
AGCAAGCACGACTTCTGGCGTATGGTGGACGTGTGCACTGGCTATCTGCC
CAAGGACAAGCCGCGCTACCTGATGGGCGTGGGTTTTGCGGCGGATCTGG
TGGTCTGCGTGGCCCTGGGCATCGATATGTTCGACTGTGTCTTCCCCACC
CGGACAGCTCGATTTGGTTGCGCCCTGGTGGACAGTGGGCAGCTGAACCT
GAAGCAGCCCAAGTACAAACTGGACATGGAGCCCATTGACAAGGACTGCG
ACTGCAGCACGTGTAGGCGTTACACACGCTCGTACCTGCACCACATCGCC
ACCAACGAGAGTGTCTCCAGCTCCCTGTTGAGCATACACAACGTGGCCTA
CCAGCTCAGGCTGATGAGGAGCATGCGGGAGGCCATTCAGCGCGATGAGT
TCCCCCAGTTCGTCGCGGACTTTATGGCGAGACACTTCAAGGCGGAACCT
GTTCCGGCTTGGATACGAGAAGCTCTGTCTGCCGTAAACATCCAGCTGCC
TGCGGATCCGGAGAGGATTGATGAGCAGGACCAGAAGCCAAAGACCGAAA
AGAGACGGGAAACAGAGGACGTGGCGGAGGAGCAGGTGGCCTCCAGCGCA
AGCTTTCTAGACCAT
BO09462.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:32:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tgt-RA | 1284 | CG4947-PA | 1..1281 | 17..1297 | 6405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:32:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tgt-RA | 1566 | CG4947-RA | 102..1382 | 17..1297 | 6405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:32:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1184321..1185514 | 104..1297 | 5970 | 100 | Plus |
| 2L | 23513712 | 2L | 1184166..1184255 | 17..106 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:32:47 has no hits.
BO09462.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:27 Download gff for
BO09462.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tgt-RA | 1..1284 | 17..1301 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:55:41 Download gff for
BO09462.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tgt-RA | 79..1359 | 17..1299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:17 Download gff for
BO09462.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tgt-RA | 102..1382 | 17..1299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:28 Download gff for
BO09462.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tgt-RA | 76..1362 | 12..1301 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:16 Download gff for
BO09462.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tgt-RA | 102..1382 | 17..1299 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:16 Download gff for
BO09462.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1184166..1184254 | 17..105 | 100 | -> | Plus |
| 2L | 1184323..1185514 | 106..1299 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:17 Download gff for
BO09462.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1184166..1184254 | 17..105 | 100 | -> | Plus |
| arm_2L | 1184323..1185514 | 106..1299 | 99 | | Plus |
BO09462.pep Sequence
Translation from 16 to 1315
> BO09462.pep
MGPSHIPPLTYKVVAECSVSKARAGLMTLRHSEVNTPVFMPVGTQGTLKG
IVPDQLIELNCQILLGNTYHLGLRPGIETLKKAGGLHKFMGWPRAILTDS
GGFQMVSLLQLAEIDEHGVNFRSPFDNSQCMLTPEHSIEIQNAIGGDIMM
QLDDVVKTTTTGPRVEEAMERTIRWVDRCIEAHARDDDQSLFPIVQGGLD
VPLRQRCVSALMERQVRGFAVGGLSGGESKHDFWRMVDVCTGYLPKDKPR
YLMGVGFAADLVVCVALGIDMFDCVFPTRTARFGCALVDSGQLNLKQPKY
KLDMEPIDKDCDCSTCRRYTRSYLHHIATNESVSSSLLSIHNVAYQLRLM
RSMREAIQRDEFPQFVADFMARHFKAEPVPAWIREALSAVNIQLPADPER
IDEQDQKPKTEKRRETEDVAEEQVASSASFLDH
BO09462.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tgt-PA | 427 | CG4947-PA | 1..427 | 1..427 | 2245 | 100 | Plus |
| CG3434-PA | 418 | CG3434-PA | 128..379 | 132..364 | 202 | 26.5 | Plus |
